Wall clock time and date at job start Sat Apr 11 2020 05:55:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30739 * 1 3 3 Si 1.86804 * 120.00033 * 2 1 4 4 H 1.48495 * 109.47362 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47184 * 300.00811 * 3 2 1 6 6 H 1.48502 * 109.46849 * 60.00452 * 3 2 1 7 7 C 1.40027 * 119.99967 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99886 * 161.21842 * 7 2 1 9 9 C 1.41538 * 120.00053 * 341.21871 * 7 2 1 10 10 C 1.41169 * 120.99716 * 332.36813 * 9 7 2 11 11 C 1.37594 * 119.01579 * 180.02562 * 10 9 7 12 12 N 1.32082 * 121.10801 * 359.97438 * 11 10 9 13 13 C 1.32467 * 122.23385 * 359.97438 * 12 11 10 14 14 N 1.39465 * 119.57904 * 180.02562 * 13 12 11 15 15 C 1.34774 * 120.00352 * 354.24735 * 14 13 12 16 16 O 1.21275 * 119.99524 * 354.99705 * 15 14 13 17 17 C 1.50696 * 120.00309 * 175.00027 * 15 14 13 18 18 C 1.52995 * 109.47504 * 179.97438 * 17 15 14 19 19 H 1.09008 * 109.70923 * 305.59318 * 18 17 15 20 20 C 1.53468 * 109.71687 * 185.00010 * 18 17 15 21 21 O 1.43171 * 108.25338 * 180.57912 * 20 18 17 22 22 C 1.36111 * 116.71463 * 46.17611 * 21 20 18 23 23 C 1.38703 * 119.40338 * 162.81812 * 22 21 20 24 24 C 1.38190 * 120.06653 * 179.78853 * 23 22 21 25 25 C 1.38253 * 120.11640 * 0.07117 * 24 23 22 26 26 C 1.38192 * 120.11056 * 0.02562 * 25 24 23 27 27 C 1.38697 * 120.06546 * 0.02562 * 26 25 24 28 28 O 1.36119 * 119.38974 * 179.71240 * 27 26 25 29 29 C 1.38604 * 120.83820 * 0.02821 * 13 12 11 30 30 H 0.97004 * 120.00239 * 359.97438 * 1 2 3 31 31 H 1.07995 * 120.49489 * 0.04699 * 10 9 7 32 32 H 1.07994 * 119.44355 * 180.25070 * 11 10 9 33 33 H 0.97002 * 119.99616 * 174.24750 * 14 13 12 34 34 H 1.08995 * 109.47434 * 300.00385 * 17 15 14 35 35 H 1.09007 * 109.47017 * 59.99934 * 17 15 14 36 36 H 1.08999 * 109.70849 * 300.27418 * 20 18 17 37 37 H 1.09003 * 109.70783 * 60.88878 * 20 18 17 38 38 H 1.08007 * 119.96342 * 359.83916 * 23 22 21 39 39 H 1.08004 * 119.94035 * 180.02562 * 24 23 22 40 40 H 1.08001 * 119.93837 * 180.02562 * 25 24 23 41 41 H 1.07998 * 119.96636 * 180.02562 * 26 25 24 42 42 H 1.08000 * 120.59904 * 179.97438 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6178 0.0000 4 1 3.7014 1.3465 -0.0006 5 1 1.8825 2.3965 -1.2124 6 1 1.8827 2.3964 1.2126 7 6 2.0075 -1.2127 -0.0005 8 1 3.0444 -1.2374 -0.3017 9 6 1.3564 -2.4060 0.3936 10 6 0.2746 -2.3786 1.3002 11 6 -0.3283 -3.5632 1.6558 12 7 0.0884 -4.7157 1.1634 13 6 1.0978 -4.7956 0.3093 14 7 1.4917 -6.0421 -0.1765 15 6 0.9254 -7.1644 0.3095 16 8 0.1403 -7.0972 1.2314 17 6 1.2677 -8.5028 -0.2926 18 6 0.4950 -9.6032 0.4374 19 1 0.6881 -9.5395 1.5083 20 6 0.9323 -10.9777 -0.0866 21 8 0.1820 -11.9812 0.6062 22 6 -1.1582 -11.7727 0.7213 23 6 -1.9872 -12.8359 1.0473 24 6 -3.3493 -12.6387 1.1719 25 6 -3.8896 -11.3822 0.9708 26 6 -3.0695 -10.3191 0.6438 27 6 -1.7017 -10.5103 0.5161 28 8 -0.9075 -9.4547 0.1878 29 6 1.7675 -3.6559 -0.1077 30 1 -0.4851 0.8401 0.0004 31 1 -0.0747 -1.4418 1.7084 32 1 -1.1590 -3.5499 2.3458 33 1 2.1732 -6.1014 -0.8642 34 1 0.9960 -8.5066 -1.3481 35 1 2.3380 -8.6832 -0.1923 36 1 0.7339 -11.0435 -1.1563 37 1 1.9967 -11.1206 0.0998 38 1 -1.5676 -13.8186 1.2046 39 1 -3.9929 -13.4680 1.4262 40 1 -4.9545 -11.2313 1.0693 41 1 -3.4941 -9.3384 0.4876 42 1 2.5902 -3.7255 -0.8039 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001435478474.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:25 Heat of formation + Delta-G solvation = -42.248176 kcal Electronic energy + Delta-G solvation = -27974.197346 eV Core-core repulsion = 23885.045800 eV Total energy + Delta-G solvation = -4089.151546 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.126 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.41657 -39.66581 -38.11474 -37.62714 -37.19567 -34.50000 -33.59725 -33.00503 -30.77322 -30.71686 -29.56152 -28.61655 -27.11522 -25.99873 -24.13938 -22.86207 -21.95062 -21.71668 -20.71167 -19.75345 -18.85783 -17.95777 -17.69485 -16.99649 -16.62741 -15.93255 -15.39712 -15.23958 -15.14566 -15.06822 -14.69629 -14.42987 -14.26554 -14.04244 -13.93698 -13.77849 -13.54404 -12.98460 -12.93051 -12.68608 -12.46666 -12.06464 -11.96093 -11.82121 -11.45119 -11.34311 -11.27356 -11.06728 -10.99723 -10.52401 -10.38941 -10.08920 -9.74968 -9.45589 -9.33140 -8.75623 -8.15835 -8.05435 -7.75218 -7.05443 -6.88272 -4.62972 1.18046 1.21087 2.51881 2.72885 2.87876 3.01099 3.03425 3.06310 3.14292 3.40028 3.45358 3.62469 3.84048 4.08002 4.43042 4.48669 4.61906 4.63974 4.83670 4.89861 5.02655 5.07341 5.16121 5.20332 5.32272 5.37011 5.53810 5.64997 5.76259 5.97104 6.02725 6.09876 6.34734 6.51303 6.54631 6.55404 6.74244 6.82268 6.88250 7.07785 7.35337 7.36214 7.43964 7.75311 7.84310 8.14985 8.42078 8.64281 8.71986 8.81063 9.66016 10.05419 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.027671 B = 0.002097 C = 0.001982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1011.662881 B =13348.338832 C =14125.370800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.784 5.784 2 C 0.080 3.920 3 Si 0.910 3.090 4 H -0.259 1.259 5 H -0.274 1.274 6 H -0.270 1.270 7 C -0.462 4.462 8 H 0.082 0.918 9 C 0.149 3.851 10 C -0.223 4.223 11 C 0.106 3.894 12 N -0.553 5.553 13 C 0.350 3.650 14 N -0.662 5.662 15 C 0.498 3.502 16 O -0.465 6.465 17 C -0.136 4.136 18 C 0.070 3.930 19 H 0.095 0.905 20 C 0.026 3.974 21 O -0.307 6.307 22 C 0.042 3.958 23 C -0.116 4.116 24 C -0.124 4.124 25 C -0.115 4.115 26 C -0.113 4.113 27 C 0.063 3.937 28 O -0.287 6.287 29 C -0.303 4.303 30 H 0.283 0.717 31 H 0.119 0.881 32 H 0.124 0.876 33 H 0.406 0.594 34 H 0.105 0.895 35 H 0.115 0.885 36 H 0.078 0.922 37 H 0.123 0.877 38 H 0.131 0.869 39 H 0.129 0.871 40 H 0.130 0.870 41 H 0.136 0.864 42 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.112 -19.570 -2.223 19.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.408 5.408 2 C -0.140 4.140 3 Si 0.733 3.267 4 H -0.183 1.183 5 H -0.199 1.199 6 H -0.195 1.195 7 C -0.492 4.492 8 H 0.100 0.900 9 C 0.141 3.859 10 C -0.246 4.246 11 C -0.045 4.045 12 N -0.273 5.273 13 C 0.123 3.877 14 N -0.309 5.309 15 C 0.282 3.718 16 O -0.334 6.334 17 C -0.176 4.176 18 C 0.013 3.987 19 H 0.112 0.888 20 C -0.049 4.049 21 O -0.222 6.222 22 C -0.003 4.003 23 C -0.134 4.134 24 C -0.142 4.142 25 C -0.134 4.134 26 C -0.132 4.132 27 C 0.017 3.983 28 O -0.201 6.201 29 C -0.329 4.329 30 H 0.094 0.906 31 H 0.137 0.863 32 H 0.141 0.859 33 H 0.240 0.760 34 H 0.124 0.876 35 H 0.133 0.867 36 H 0.096 0.904 37 H 0.141 0.859 38 H 0.149 0.851 39 H 0.147 0.853 40 H 0.148 0.852 41 H 0.154 0.846 42 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -1.073 -20.186 -1.301 20.256 hybrid contribution 1.292 1.749 -0.821 2.324 sum 0.219 -18.437 -2.122 18.560 Atomic orbital electron populations 1.69797 1.07752 1.29621 1.33664 1.25942 0.94706 1.01459 0.91882 0.86244 0.81024 0.80693 0.78692 1.18282 1.19896 1.19538 1.19542 0.98606 0.90918 1.40180 0.89974 1.17563 0.89614 0.91520 0.87210 1.22065 1.02045 0.97904 1.02613 1.21866 0.97594 0.87689 0.97366 1.67198 1.15759 1.28744 1.15585 1.18002 0.92777 0.83159 0.93785 1.43438 1.41467 1.04549 1.41447 1.20289 0.82187 0.84988 0.84367 1.90828 1.30912 1.85803 1.25827 1.21708 1.01375 0.92400 1.02126 1.22825 0.80355 0.94117 1.01443 0.88764 1.23688 0.97308 0.87059 0.96891 1.86284 1.16186 1.46038 1.73679 1.18942 0.83746 0.92972 1.04615 1.20393 0.92519 0.97279 1.03246 1.20873 0.93937 0.97568 1.01801 1.20928 0.99821 0.92206 1.00410 1.20555 0.90207 1.00590 1.01806 1.19017 0.91919 0.85567 1.01751 1.86477 1.17581 1.36280 1.79735 1.21219 1.08216 0.92320 1.11143 0.90588 0.86299 0.85899 0.75969 0.87633 0.86702 0.90385 0.85914 0.85074 0.85279 0.85168 0.84610 0.88018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -19.72 11.30 55.55 0.63 -19.09 16 2 C 0.08 1.94 5.13 -17.35 -0.09 1.85 16 3 Si 0.91 17.91 29.60 -169.99 -5.03 12.87 16 4 H -0.26 -5.04 7.11 56.52 0.40 -4.64 16 5 H -0.27 -5.30 7.11 56.52 0.40 -4.90 16 6 H -0.27 -5.26 7.11 56.52 0.40 -4.86 16 7 C -0.46 -11.79 9.09 -37.65 -0.34 -12.13 16 8 H 0.08 2.00 7.91 -52.48 -0.42 1.58 16 9 C 0.15 3.91 5.55 -106.55 -0.59 3.31 16 10 C -0.22 -5.79 8.77 -38.70 -0.34 -6.13 16 11 C 0.11 2.66 11.15 -17.68 -0.20 2.46 16 12 N -0.55 -14.18 7.89 -12.52 -0.10 -14.28 16 13 C 0.35 8.14 7.40 -154.71 -1.15 6.99 16 14 N -0.66 -11.73 5.39 -11.49 -0.06 -11.79 16 15 C 0.50 8.62 7.67 -10.99 -0.08 8.53 16 16 O -0.47 -10.39 13.77 -7.22 -0.10 -10.49 16 17 C -0.14 -1.46 5.43 -27.89 -0.15 -1.62 16 18 C 0.07 0.86 2.55 -26.49 -0.07 0.79 16 19 H 0.09 1.31 7.94 -51.92 -0.41 0.89 16 20 C 0.03 0.24 6.56 37.40 0.25 0.49 16 21 O -0.31 -3.71 10.42 -32.87 -0.34 -4.05 16 22 C 0.04 0.54 6.49 -39.14 -0.25 0.29 16 23 C -0.12 -1.25 9.96 -39.43 -0.39 -1.64 16 24 C -0.12 -1.18 10.04 -39.59 -0.40 -1.57 16 25 C -0.12 -1.19 10.04 -39.59 -0.40 -1.59 16 26 C -0.11 -1.47 9.96 -39.43 -0.39 -1.87 16 27 C 0.06 0.91 6.49 -39.14 -0.25 0.65 16 28 O -0.29 -4.48 9.40 -43.76 -0.41 -4.90 16 29 C -0.30 -7.21 9.73 -38.47 -0.37 -7.58 16 30 H 0.28 6.43 8.29 -40.82 -0.34 6.09 16 31 H 0.12 3.11 6.56 -52.49 -0.34 2.77 16 32 H 0.12 2.78 8.06 -52.49 -0.42 2.36 16 33 H 0.41 5.33 8.70 -40.82 -0.36 4.97 16 34 H 0.11 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.11 0.77 8.14 -51.92 -0.42 0.35 16 36 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.12 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.13 1.15 8.06 -52.48 -0.42 0.73 16 39 H 0.13 0.85 8.06 -52.48 -0.42 0.43 16 40 H 0.13 1.01 8.06 -52.49 -0.42 0.59 16 41 H 0.14 1.76 8.06 -52.49 -0.42 1.34 16 42 H 0.10 2.16 8.06 -52.49 -0.42 1.73 16 LS Contribution 361.42 15.07 5.45 5.45 Total: -1.00 -34.46 361.42 -10.09 -44.55 By element: Atomic # 1 Polarization: 15.38 SS G_CDS: -4.89 Total: 10.49 kcal Atomic # 6 Polarization: -3.53 SS G_CDS: -5.23 Total: -8.76 kcal Atomic # 7 Polarization: -45.63 SS G_CDS: 0.47 Total: -45.16 kcal Atomic # 8 Polarization: -18.59 SS G_CDS: -0.85 Total: -19.44 kcal Atomic # 14 Polarization: 17.91 SS G_CDS: -5.03 Total: 12.87 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -34.46 -10.09 -44.55 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001435478474.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.300 kcal (2) G-P(sol) polarization free energy of solvation -34.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.548 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds