Wall clock time and date at job start Sat Apr 11 2020 05:55:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30739 * 1 3 3 Si 1.86804 * 120.00033 * 2 1 4 4 H 1.48495 * 109.47362 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47184 * 300.00811 * 3 2 1 6 6 H 1.48502 * 109.46849 * 60.00452 * 3 2 1 7 7 C 1.40027 * 119.99967 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99886 * 161.21842 * 7 2 1 9 9 C 1.41538 * 120.00053 * 341.21871 * 7 2 1 10 10 C 1.41169 * 120.99716 * 332.36813 * 9 7 2 11 11 C 1.37594 * 119.01579 * 180.02562 * 10 9 7 12 12 N 1.32082 * 121.10801 * 359.97438 * 11 10 9 13 13 C 1.32467 * 122.23385 * 359.97438 * 12 11 10 14 14 N 1.39465 * 119.57904 * 180.02562 * 13 12 11 15 15 C 1.34774 * 120.00352 * 354.24735 * 14 13 12 16 16 O 1.21275 * 119.99524 * 354.99705 * 15 14 13 17 17 C 1.50696 * 120.00309 * 175.00027 * 15 14 13 18 18 C 1.52995 * 109.47504 * 179.97438 * 17 15 14 19 19 H 1.09008 * 109.70923 * 305.59318 * 18 17 15 20 20 C 1.53468 * 109.71687 * 185.00010 * 18 17 15 21 21 O 1.43171 * 108.25338 * 180.57912 * 20 18 17 22 22 C 1.36111 * 116.71463 * 46.17611 * 21 20 18 23 23 C 1.38703 * 119.40338 * 162.81812 * 22 21 20 24 24 C 1.38190 * 120.06653 * 179.78853 * 23 22 21 25 25 C 1.38253 * 120.11640 * 0.07117 * 24 23 22 26 26 C 1.38192 * 120.11056 * 0.02562 * 25 24 23 27 27 C 1.38697 * 120.06546 * 0.02562 * 26 25 24 28 28 O 1.36119 * 119.38974 * 179.71240 * 27 26 25 29 29 C 1.38604 * 120.83820 * 0.02821 * 13 12 11 30 30 H 0.97004 * 120.00239 * 359.97438 * 1 2 3 31 31 H 1.07995 * 120.49489 * 0.04699 * 10 9 7 32 32 H 1.07994 * 119.44355 * 180.25070 * 11 10 9 33 33 H 0.97002 * 119.99616 * 174.24750 * 14 13 12 34 34 H 1.08995 * 109.47434 * 300.00385 * 17 15 14 35 35 H 1.09007 * 109.47017 * 59.99934 * 17 15 14 36 36 H 1.08999 * 109.70849 * 300.27418 * 20 18 17 37 37 H 1.09003 * 109.70783 * 60.88878 * 20 18 17 38 38 H 1.08007 * 119.96342 * 359.83916 * 23 22 21 39 39 H 1.08004 * 119.94035 * 180.02562 * 24 23 22 40 40 H 1.08001 * 119.93837 * 180.02562 * 25 24 23 41 41 H 1.07998 * 119.96636 * 180.02562 * 26 25 24 42 42 H 1.08000 * 120.59904 * 179.97438 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6178 0.0000 4 1 3.7014 1.3465 -0.0006 5 1 1.8825 2.3965 -1.2124 6 1 1.8827 2.3964 1.2126 7 6 2.0075 -1.2127 -0.0005 8 1 3.0444 -1.2374 -0.3017 9 6 1.3564 -2.4060 0.3936 10 6 0.2746 -2.3786 1.3002 11 6 -0.3283 -3.5632 1.6558 12 7 0.0884 -4.7157 1.1634 13 6 1.0978 -4.7956 0.3093 14 7 1.4917 -6.0421 -0.1765 15 6 0.9254 -7.1644 0.3095 16 8 0.1403 -7.0972 1.2314 17 6 1.2677 -8.5028 -0.2926 18 6 0.4950 -9.6032 0.4374 19 1 0.6881 -9.5395 1.5083 20 6 0.9323 -10.9777 -0.0866 21 8 0.1820 -11.9812 0.6062 22 6 -1.1582 -11.7727 0.7213 23 6 -1.9872 -12.8359 1.0473 24 6 -3.3493 -12.6387 1.1719 25 6 -3.8896 -11.3822 0.9708 26 6 -3.0695 -10.3191 0.6438 27 6 -1.7017 -10.5103 0.5161 28 8 -0.9075 -9.4547 0.1878 29 6 1.7675 -3.6559 -0.1077 30 1 -0.4851 0.8401 0.0004 31 1 -0.0747 -1.4418 1.7084 32 1 -1.1590 -3.5499 2.3458 33 1 2.1732 -6.1014 -0.8642 34 1 0.9960 -8.5066 -1.3481 35 1 2.3380 -8.6832 -0.1923 36 1 0.7339 -11.0435 -1.1563 37 1 1.9967 -11.1206 0.0998 38 1 -1.5676 -13.8186 1.2046 39 1 -3.9929 -13.4680 1.4262 40 1 -4.9545 -11.2313 1.0693 41 1 -3.4941 -9.3384 0.4876 42 1 2.5902 -3.7255 -0.8039 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001435478474.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:25 Heat of formation + Delta-G solvation = -63.536753 kcal Electronic energy + Delta-G solvation = -27975.120488 eV Core-core repulsion = 23885.045800 eV Total energy + Delta-G solvation = -4090.074688 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.126 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.32165 -41.19996 -39.65721 -38.61370 -38.19485 -36.24874 -35.32070 -33.98766 -32.63803 -31.62552 -30.83352 -29.93542 -28.15801 -27.87889 -25.15106 -23.82687 -23.69648 -23.33038 -21.67836 -21.18390 -19.85247 -19.68433 -18.63293 -18.12166 -17.78007 -17.60060 -16.85779 -16.38817 -16.23951 -16.21745 -16.08649 -15.80258 -15.60530 -15.37021 -15.06333 -14.84838 -14.74620 -14.49196 -14.32950 -14.25427 -13.80744 -13.25305 -13.00546 -12.98235 -12.81176 -12.77938 -12.69560 -12.14120 -12.09453 -11.94884 -11.89302 -11.45244 -11.42049 -11.17890 -10.95263 -10.00338 -9.63625 -9.62215 -9.05942 -8.87598 -8.71785 -6.58375 0.30430 0.33894 0.73115 0.94134 1.39853 1.51471 1.55814 1.88612 2.02429 2.09490 2.19091 2.27718 2.75402 2.77897 3.17415 3.49907 3.56881 3.70579 3.78127 3.89887 4.11685 4.19161 4.26833 4.34138 4.39025 4.42478 4.49492 4.62783 4.69098 4.72671 4.82757 4.90478 4.91516 5.01176 5.19932 5.20775 5.23338 5.42995 5.51410 5.61023 5.73221 5.90247 5.95829 6.11977 6.42705 6.45059 6.60861 6.77739 6.79570 7.32800 7.82905 8.24621 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.027671 B = 0.002097 C = 0.001982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1011.662881 B =13348.338832 C =14125.370800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.816 5.816 2 C 0.039 3.961 3 Si 0.988 3.012 4 H -0.253 1.253 5 H -0.265 1.265 6 H -0.266 1.266 7 C -0.487 4.487 8 H 0.089 0.911 9 C 0.120 3.880 10 C -0.243 4.243 11 C 0.098 3.902 12 N -0.581 5.581 13 C 0.349 3.651 14 N -0.651 5.651 15 C 0.491 3.509 16 O -0.522 6.522 17 C -0.117 4.117 18 C 0.062 3.938 19 H 0.068 0.932 20 C 0.031 3.969 21 O -0.317 6.317 22 C 0.028 3.972 23 C -0.120 4.120 24 C -0.114 4.114 25 C -0.114 4.114 26 C -0.140 4.140 27 C 0.031 3.969 28 O -0.320 6.320 29 C -0.312 4.312 30 H 0.292 0.708 31 H 0.107 0.893 32 H 0.136 0.864 33 H 0.428 0.572 34 H 0.132 0.868 35 H 0.168 0.832 36 H 0.093 0.907 37 H 0.163 0.837 38 H 0.154 0.846 39 H 0.166 0.834 40 H 0.156 0.844 41 H 0.121 0.879 42 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.633 -21.304 -3.428 21.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.441 5.441 2 C -0.179 4.179 3 Si 0.808 3.192 4 H -0.176 1.176 5 H -0.189 1.189 6 H -0.190 1.190 7 C -0.517 4.517 8 H 0.107 0.893 9 C 0.112 3.888 10 C -0.266 4.266 11 C -0.053 4.053 12 N -0.301 5.301 13 C 0.120 3.880 14 N -0.300 5.300 15 C 0.278 3.722 16 O -0.395 6.395 17 C -0.156 4.156 18 C 0.005 3.995 19 H 0.086 0.914 20 C -0.044 4.044 21 O -0.232 6.232 22 C -0.016 4.016 23 C -0.138 4.138 24 C -0.132 4.132 25 C -0.132 4.132 26 C -0.159 4.159 27 C -0.014 4.014 28 O -0.236 6.236 29 C -0.338 4.338 30 H 0.103 0.897 31 H 0.125 0.875 32 H 0.153 0.847 33 H 0.267 0.733 34 H 0.150 0.850 35 H 0.186 0.814 36 H 0.111 0.889 37 H 0.180 0.820 38 H 0.171 0.829 39 H 0.184 0.816 40 H 0.174 0.826 41 H 0.139 0.861 42 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 0.480 -21.964 -2.547 22.116 hybrid contribution 0.751 2.205 -0.438 2.370 sum 1.231 -19.759 -2.985 20.021 Atomic orbital electron populations 1.69848 1.09402 1.31201 1.33625 1.26884 0.95426 1.04882 0.90706 0.85074 0.79590 0.75607 0.78947 1.17621 1.18936 1.19047 1.19856 0.99084 0.91708 1.41073 0.89284 1.17988 0.90072 0.93042 0.87674 1.22008 1.03192 0.97616 1.03831 1.22108 0.97925 0.87684 0.97572 1.67314 1.17153 1.28735 1.16879 1.18332 0.91679 0.85337 0.92635 1.43454 1.41895 1.02970 1.41668 1.21489 0.80630 0.86685 0.83376 1.90811 1.33319 1.86801 1.28525 1.21781 1.04153 0.87273 1.02426 1.22985 0.79454 0.96611 1.00473 0.91437 1.23930 0.98820 0.84356 0.97279 1.86253 1.15888 1.46840 1.74213 1.19188 0.84460 0.92929 1.05071 1.20812 0.92998 0.97701 1.02297 1.21324 0.93978 0.98091 0.99818 1.21269 1.00839 0.91884 0.99170 1.20734 0.90610 1.01062 1.03450 1.19328 0.92364 0.86172 1.03546 1.86422 1.19291 1.37618 1.80222 1.21440 1.08946 0.91838 1.11565 0.89681 0.87454 0.84686 0.73258 0.84995 0.81428 0.88880 0.82001 0.82860 0.81613 0.82642 0.86100 0.85595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -41.77 11.30 21.84 0.25 -41.53 16 2 C 0.04 1.87 5.13 85.29 0.44 2.31 16 3 Si 0.99 36.31 29.60 68.60 2.03 38.34 16 4 H -0.25 -8.97 7.11 99.48 0.71 -8.26 16 5 H -0.26 -9.30 7.11 99.48 0.71 -8.59 16 6 H -0.27 -9.51 7.11 99.48 0.71 -8.80 16 7 C -0.49 -25.15 9.09 23.52 0.21 -24.94 16 8 H 0.09 4.32 7.91 -2.91 -0.02 4.30 16 9 C 0.12 6.47 5.55 -21.12 -0.12 6.35 16 10 C -0.24 -13.18 8.77 22.84 0.20 -12.98 16 11 C 0.10 5.16 11.15 84.50 0.94 6.10 16 12 N -0.58 -30.80 7.89 -193.53 -1.53 -32.33 16 13 C 0.35 16.41 7.40 132.76 0.98 17.39 16 14 N -0.65 -22.48 5.39 -308.67 -1.66 -24.15 16 15 C 0.49 16.79 7.67 87.66 0.67 17.46 16 16 O -0.52 -24.20 13.77 9.20 0.13 -24.07 16 17 C -0.12 -2.24 5.43 29.84 0.16 -2.08 16 18 C 0.06 1.48 2.55 30.75 0.08 1.56 16 19 H 0.07 1.93 7.94 -2.38 -0.02 1.91 16 20 C 0.03 0.50 6.56 72.14 0.47 0.97 16 21 O -0.32 -7.20 10.42 -82.59 -0.86 -8.06 16 22 C 0.03 0.72 6.49 22.56 0.15 0.87 16 23 C -0.12 -2.37 9.96 22.37 0.22 -2.15 16 24 C -0.11 -1.91 10.04 22.26 0.22 -1.69 16 25 C -0.11 -2.26 10.04 22.26 0.22 -2.03 16 26 C -0.14 -3.83 9.96 22.37 0.22 -3.61 16 27 C 0.03 0.92 6.49 22.56 0.15 1.07 16 28 O -0.32 -10.39 9.40 -72.29 -0.68 -11.07 16 29 C -0.31 -14.98 9.73 22.99 0.22 -14.76 16 30 H 0.29 13.42 8.29 -92.71 -0.77 12.65 16 31 H 0.11 5.93 6.56 -2.91 -0.02 5.91 16 32 H 0.14 6.47 8.06 -2.91 -0.02 6.45 16 33 H 0.43 10.28 8.70 -92.71 -0.81 9.48 16 34 H 0.13 1.93 8.14 -2.39 -0.02 1.91 16 35 H 0.17 1.43 8.14 -2.38 -0.02 1.41 16 36 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 37 H 0.16 1.24 8.14 -2.39 -0.02 1.22 16 38 H 0.15 2.26 8.06 -2.91 -0.02 2.24 16 39 H 0.17 1.52 8.06 -2.91 -0.02 1.50 16 40 H 0.16 2.16 8.06 -2.91 -0.02 2.14 16 41 H 0.12 3.49 8.06 -2.91 -0.02 3.46 16 42 H 0.13 5.24 8.06 -2.91 -0.02 5.22 16 Total: -1.00 -81.04 361.42 3.39 -77.64 By element: Atomic # 1 Polarization: 35.10 SS G_CDS: 0.27 Total: 35.37 kcal Atomic # 6 Polarization: -15.61 SS G_CDS: 5.45 Total: -10.15 kcal Atomic # 7 Polarization: -95.06 SS G_CDS: -2.94 Total: -98.00 kcal Atomic # 8 Polarization: -41.79 SS G_CDS: -1.41 Total: -43.20 kcal Atomic # 14 Polarization: 36.31 SS G_CDS: 2.03 Total: 38.34 kcal Total: -81.04 3.39 -77.64 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001435478474.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.106 kcal (2) G-P(sol) polarization free energy of solvation -81.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.642 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds