Wall clock time and date at job start Sat Apr 11 2020 05:55:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30740 * 1 3 3 Si 1.86802 * 120.00116 * 2 1 4 4 H 1.48496 * 109.47292 * 240.00413 * 3 2 1 5 5 H 1.48508 * 109.47068 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47362 * 119.99827 * 3 2 1 7 7 C 1.40029 * 120.00288 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00524 * 196.82813 * 7 2 1 9 9 C 1.41551 * 119.99763 * 16.82783 * 7 2 1 10 10 C 1.41169 * 120.99486 * 203.64664 * 9 7 2 11 11 C 1.37590 * 119.01427 * 180.02562 * 10 9 7 12 12 N 1.32084 * 121.10787 * 359.97438 * 11 10 9 13 13 C 1.32468 * 122.23283 * 0.02562 * 12 11 10 14 14 N 1.39467 * 119.57967 * 179.97438 * 13 12 11 15 15 C 1.34777 * 120.00098 * 5.17528 * 14 13 12 16 16 O 1.21283 * 119.99965 * 355.13016 * 15 14 13 17 17 C 1.50692 * 120.00222 * 175.13850 * 15 14 13 18 18 C 1.53001 * 109.47298 * 179.97438 * 17 15 14 19 19 H 1.09007 * 109.70780 * 55.59266 * 18 17 15 20 20 C 1.53471 * 109.71065 * 176.22053 * 18 17 15 21 21 O 1.43176 * 108.25449 * 179.41404 * 20 18 17 22 22 C 1.36106 * 116.71696 * 313.83328 * 21 20 18 23 23 C 1.38701 * 119.40564 * 197.00775 * 22 21 20 24 24 C 1.38198 * 120.07050 * 180.40043 * 23 22 21 25 25 C 1.38251 * 120.11078 * 359.97438 * 24 23 22 26 26 C 1.38196 * 120.11561 * 359.91944 * 25 24 23 27 27 C 1.38705 * 120.06362 * 0.04217 * 26 25 24 28 28 O 1.36099 * 119.39156 * 180.12573 * 27 26 25 29 29 C 1.38598 * 120.83797 * 0.27113 * 13 12 11 30 30 H 0.97003 * 120.00262 * 0.02562 * 1 2 3 31 31 H 1.08003 * 120.49770 * 0.02562 * 10 9 7 32 32 H 1.08003 * 119.44535 * 180.02562 * 11 10 9 33 33 H 0.97002 * 119.99935 * 185.17092 * 14 13 12 34 34 H 1.08996 * 109.47438 * 59.99651 * 17 15 14 35 35 H 1.09000 * 109.47065 * 299.99522 * 17 15 14 36 36 H 1.08997 * 109.71138 * 299.10222 * 20 18 17 37 37 H 1.08999 * 109.70711 * 59.72271 * 20 18 17 38 38 H 1.07999 * 119.96694 * 0.37318 * 23 22 21 39 39 H 1.08000 * 119.94485 * 179.97438 * 24 23 22 40 40 H 1.08001 * 119.94006 * 179.64494 * 25 24 23 41 41 H 1.08000 * 119.96997 * 180.02562 * 26 25 24 42 42 H 1.08006 * 120.59921 * 179.72892 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 3.0951 1.6965 -1.2125 5 1 1.2764 2.7465 0.0006 6 1 3.0952 1.6965 1.2125 7 6 2.0076 -1.2127 -0.0005 8 1 3.0529 -1.2328 0.2702 9 6 1.3453 -2.4121 -0.3560 10 6 1.8230 -3.6648 0.0862 11 6 1.1478 -4.8050 -0.2840 12 7 0.0672 -4.7428 -1.0411 13 6 -0.4213 -3.5931 -1.4819 14 7 -1.5659 -3.5918 -2.2789 15 6 -2.2274 -4.7431 -2.5101 16 8 -1.7796 -5.7927 -2.0994 17 6 -3.5233 -4.7262 -3.2790 18 6 -4.0629 -6.1528 -3.4005 19 1 -4.1639 -6.5933 -2.4085 20 6 -5.4288 -6.1317 -4.0999 21 8 -5.8974 -7.4801 -4.2094 22 6 -5.0022 -8.4051 -4.6515 23 6 -5.4607 -9.6290 -5.1158 24 6 -4.5633 -10.5814 -5.5603 25 6 -3.2064 -10.3169 -5.5438 26 6 -2.7430 -9.0987 -5.0845 27 6 -3.6384 -8.1382 -4.6379 28 8 -3.1672 -6.9422 -4.1908 29 6 0.1939 -2.3920 -1.1662 30 1 -0.4851 0.8400 -0.0004 31 1 2.7053 -3.7273 0.7060 32 1 1.5069 -5.7670 0.0507 33 1 -1.8859 -2.7623 -2.6668 34 1 -3.3498 -4.3177 -4.2745 35 1 -4.2496 -4.1063 -2.7533 36 1 -6.1338 -5.5442 -3.5120 37 1 -5.3260 -5.6964 -5.0940 38 1 -6.5202 -9.8382 -5.1297 39 1 -4.9226 -11.5339 -5.9210 40 1 -2.5072 -11.0653 -5.8864 41 1 -1.6825 -8.8944 -5.0731 42 1 -0.2053 -1.4571 -1.5313 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001435478475.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:27 Heat of formation + Delta-G solvation = -41.769599 kcal Electronic energy + Delta-G solvation = -28130.750616 eV Core-core repulsion = 24041.619823 eV Total energy + Delta-G solvation = -4089.130794 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.126 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.39935 -39.60801 -38.10145 -37.60936 -37.17401 -34.36805 -33.74642 -32.98697 -30.76570 -30.58257 -29.53783 -28.62946 -27.09207 -26.02075 -24.10869 -22.84850 -22.02882 -21.62534 -20.65867 -19.76087 -18.85814 -17.70966 -17.69625 -17.08537 -16.66521 -15.84656 -15.36829 -15.22662 -15.18735 -15.09727 -14.63145 -14.37461 -14.23688 -14.02203 -13.93720 -13.80427 -13.46542 -12.96726 -12.81034 -12.69909 -12.55384 -12.05255 -11.91834 -11.80548 -11.46402 -11.32825 -11.24988 -11.03910 -10.92456 -10.50910 -10.33497 -10.18824 -9.76587 -9.41154 -9.35893 -8.74860 -8.14576 -8.03525 -7.74299 -7.06212 -6.84691 -4.64538 1.18695 1.21813 2.52880 2.77058 2.89824 2.97840 3.00904 3.05633 3.18822 3.43617 3.48155 3.63120 3.81501 4.11165 4.47747 4.50633 4.62986 4.65413 4.85375 4.92967 5.06514 5.11211 5.17890 5.23533 5.33730 5.40427 5.57052 5.66355 5.77396 5.97660 6.03131 6.10693 6.34962 6.52068 6.55745 6.62039 6.78219 6.83927 6.91480 7.06767 7.36110 7.37048 7.43170 7.73840 7.89762 8.18216 8.39324 8.67070 8.71045 8.85885 9.67141 10.02548 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.024923 B = 0.002230 C = 0.002099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1123.202590 B =12550.502472 C =13334.275255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.788 5.788 2 C 0.079 3.921 3 Si 0.912 3.088 4 H -0.262 1.262 5 H -0.278 1.278 6 H -0.264 1.264 7 C -0.456 4.456 8 H 0.082 0.918 9 C 0.143 3.857 10 C -0.285 4.285 11 C 0.119 3.881 12 N -0.555 5.555 13 C 0.338 3.662 14 N -0.659 5.659 15 C 0.498 3.502 16 O -0.467 6.467 17 C -0.136 4.136 18 C 0.071 3.929 19 H 0.094 0.906 20 C 0.026 3.974 21 O -0.307 6.307 22 C 0.042 3.958 23 C -0.116 4.116 24 C -0.124 4.124 25 C -0.116 4.116 26 C -0.113 4.113 27 C 0.063 3.937 28 O -0.287 6.287 29 C -0.245 4.245 30 H 0.282 0.718 31 H 0.102 0.898 32 H 0.123 0.877 33 H 0.407 0.593 34 H 0.104 0.896 35 H 0.116 0.884 36 H 0.123 0.877 37 H 0.078 0.922 38 H 0.131 0.869 39 H 0.129 0.871 40 H 0.130 0.870 41 H 0.135 0.865 42 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.950 -8.699 -10.690 18.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.413 5.413 2 C -0.141 4.141 3 Si 0.736 3.264 4 H -0.187 1.187 5 H -0.203 1.203 6 H -0.189 1.189 7 C -0.487 4.487 8 H 0.100 0.900 9 C 0.135 3.865 10 C -0.309 4.309 11 C -0.035 4.035 12 N -0.274 5.274 13 C 0.113 3.887 14 N -0.306 5.306 15 C 0.281 3.719 16 O -0.336 6.336 17 C -0.176 4.176 18 C 0.013 3.987 19 H 0.112 0.888 20 C -0.050 4.050 21 O -0.222 6.222 22 C -0.002 4.002 23 C -0.134 4.134 24 C -0.142 4.142 25 C -0.134 4.134 26 C -0.132 4.132 27 C 0.018 3.982 28 O -0.201 6.201 29 C -0.270 4.270 30 H 0.093 0.907 31 H 0.120 0.880 32 H 0.141 0.859 33 H 0.242 0.758 34 H 0.122 0.878 35 H 0.134 0.866 36 H 0.141 0.859 37 H 0.096 0.904 38 H 0.149 0.851 39 H 0.147 0.853 40 H 0.148 0.852 41 H 0.153 0.847 42 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -12.346 -10.072 -10.598 19.136 hybrid contribution 0.585 2.341 0.225 2.423 sum -11.760 -7.731 -10.374 17.484 Atomic orbital electron populations 1.69771 1.07700 1.29502 1.34368 1.25958 0.94775 1.01496 0.91844 0.86308 0.80146 0.79806 0.80157 1.18690 1.20252 1.18851 1.19549 0.97893 0.90710 1.40504 0.89988 1.17561 0.89866 0.92270 0.86812 1.21894 1.05267 0.93886 1.09809 1.21763 0.90933 0.96819 0.93967 1.67224 1.15498 1.26505 1.18151 1.18172 0.87212 0.90809 0.92510 1.43413 1.26447 1.10531 1.50185 1.20279 0.85706 0.84501 0.81393 1.90825 1.66176 1.29490 1.47060 1.21716 0.97532 0.95236 1.03151 1.22823 0.88534 0.92016 0.95300 0.88775 1.23694 0.96772 0.82234 1.02251 1.86287 1.36732 1.17016 1.82141 1.18949 0.87409 0.91830 1.02058 1.20394 1.00574 0.91638 1.00827 1.20869 0.92915 0.99116 1.01303 1.20920 0.95728 0.96218 1.00547 1.20543 0.99688 0.91663 1.01309 1.19020 0.90968 0.88012 1.00245 1.86455 1.40248 1.27414 1.65954 1.21529 1.02620 0.95514 1.07342 0.90667 0.87989 0.85920 0.75837 0.87782 0.86591 0.85872 0.90384 0.85077 0.85294 0.85202 0.84667 0.85487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.07 10.93 55.55 0.61 -18.46 16 2 C 0.08 1.87 5.20 -17.35 -0.09 1.78 16 3 Si 0.91 17.64 29.59 -169.99 -5.03 12.61 16 4 H -0.26 -5.06 7.11 56.52 0.40 -4.65 16 5 H -0.28 -5.21 7.11 56.52 0.40 -4.81 16 6 H -0.26 -5.08 7.11 56.52 0.40 -4.68 16 7 C -0.46 -11.60 9.12 -37.65 -0.34 -11.95 16 8 H 0.08 2.00 7.90 -52.49 -0.41 1.58 16 9 C 0.14 3.75 5.60 -106.55 -0.60 3.15 16 10 C -0.28 -7.00 9.90 -38.71 -0.38 -7.38 16 11 C 0.12 2.89 11.15 -17.68 -0.20 2.69 16 12 N -0.55 -14.20 7.85 -12.52 -0.10 -14.30 16 13 C 0.34 8.10 7.42 -154.71 -1.15 6.96 16 14 N -0.66 -12.45 5.39 -11.49 -0.06 -12.52 16 15 C 0.50 8.99 7.67 -10.99 -0.08 8.90 16 16 O -0.47 -10.63 13.70 -8.61 -0.12 -10.75 16 17 C -0.14 -1.57 5.44 -27.89 -0.15 -1.72 16 18 C 0.07 0.90 2.56 -26.49 -0.07 0.84 16 19 H 0.09 1.36 7.98 -51.92 -0.41 0.95 16 20 C 0.03 0.26 6.56 37.40 0.25 0.50 16 21 O -0.31 -3.81 10.42 -32.87 -0.34 -4.15 16 22 C 0.04 0.56 6.49 -39.14 -0.25 0.30 16 23 C -0.12 -1.26 9.96 -39.42 -0.39 -1.66 16 24 C -0.12 -1.18 10.04 -39.59 -0.40 -1.58 16 25 C -0.12 -1.19 10.04 -39.59 -0.40 -1.59 16 26 C -0.11 -1.47 9.96 -39.42 -0.39 -1.86 16 27 C 0.06 0.91 6.49 -39.14 -0.25 0.66 16 28 O -0.29 -4.52 9.32 -44.34 -0.41 -4.93 16 29 C -0.24 -6.13 8.62 -38.48 -0.33 -6.46 16 30 H 0.28 6.17 8.29 -40.82 -0.34 5.84 16 31 H 0.10 2.30 8.06 -52.48 -0.42 1.88 16 32 H 0.12 2.61 8.06 -52.48 -0.42 2.19 16 33 H 0.41 6.09 8.70 -40.82 -0.35 5.74 16 34 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 35 H 0.12 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.12 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.13 1.17 8.06 -52.49 -0.42 0.75 16 39 H 0.13 0.86 8.06 -52.49 -0.42 0.43 16 40 H 0.13 1.00 8.06 -52.49 -0.42 0.57 16 41 H 0.14 1.73 8.06 -52.49 -0.42 1.30 16 42 H 0.13 3.13 6.21 -52.48 -0.33 2.80 16 LS Contribution 360.73 15.07 5.44 5.44 Total: -1.00 -33.77 360.73 -10.13 -43.90 By element: Atomic # 1 Polarization: 16.46 SS G_CDS: -4.87 Total: 11.59 kcal Atomic # 6 Polarization: -3.19 SS G_CDS: -5.24 Total: -8.43 kcal Atomic # 7 Polarization: -45.72 SS G_CDS: 0.45 Total: -45.28 kcal Atomic # 8 Polarization: -18.95 SS G_CDS: -0.87 Total: -19.83 kcal Atomic # 14 Polarization: 17.64 SS G_CDS: -5.03 Total: 12.61 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -33.77 -10.13 -43.90 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001435478475.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.127 kcal (2) G-P(sol) polarization free energy of solvation -33.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.897 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds