Wall clock time and date at job start Sat Apr 11 2020 05:55:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45193 * 1 3 3 C 1.34707 * 117.00060 * 2 1 4 4 O 1.21470 * 120.00125 * 359.97438 * 3 2 1 5 5 C 1.47747 * 119.99812 * 179.97438 * 3 2 1 6 6 C 1.39763 * 120.07829 * 5.29549 * 5 3 2 7 7 C 1.38067 * 120.15930 * 179.97438 * 6 5 3 8 8 C 1.50700 * 119.84554 * 180.02562 * 7 6 5 9 9 C 1.38077 * 120.30859 * 0.02562 * 7 6 5 10 10 C 1.39757 * 120.15160 * 359.97438 * 9 7 6 11 11 C 1.47694 * 120.07925 * 180.02562 * 10 9 7 12 12 O 1.21567 * 120.00580 * 38.17122 * 11 10 9 13 13 N 1.34783 * 119.99581 * 218.17146 * 11 10 9 14 14 C 1.37014 * 119.99697 * 185.72265 * 13 11 10 15 15 H 1.07997 * 119.99944 * 218.19387 * 14 13 11 16 16 C 1.38978 * 120.00142 * 38.19396 * 14 13 11 17 17 N 1.31368 * 120.00021 * 21.73461 * 16 14 13 18 18 Si 1.86796 * 119.99968 * 201.73126 * 16 14 13 19 19 H 1.48505 * 109.46911 * 5.00704 * 18 16 14 20 20 H 1.48505 * 109.47043 * 125.00183 * 18 16 14 21 21 H 1.48501 * 109.47261 * 245.00448 * 18 16 14 22 22 C 1.39342 * 120.00419 * 5.71733 * 13 11 10 23 23 C 1.39090 * 119.69441 * 43.02503 * 22 13 11 24 24 C 1.38380 * 119.09600 * 179.72453 * 23 22 13 25 25 C 1.38831 * 118.49223 * 0.49276 * 24 23 22 26 26 C 1.38151 * 119.31477 * 359.51338 * 25 24 23 27 27 N 1.31878 * 120.85420 * 0.24112 * 26 25 24 28 28 C 1.39336 * 120.07583 * 185.56595 * 5 3 2 29 29 H 1.08998 * 109.47444 * 300.00302 * 1 2 3 30 30 H 1.09007 * 109.46831 * 59.99990 * 1 2 3 31 31 H 1.09000 * 109.47216 * 179.97438 * 1 2 3 32 32 H 1.08003 * 119.91994 * 359.97438 * 6 5 3 33 33 H 1.08999 * 109.47471 * 269.98386 * 8 7 6 34 34 H 1.09003 * 109.47287 * 29.97665 * 8 7 6 35 35 H 1.08992 * 109.47182 * 149.97697 * 8 7 6 36 36 H 1.08006 * 119.92449 * 180.02562 * 9 7 6 37 37 H 0.97000 * 120.00269 * 184.96529 * 17 16 14 38 38 H 1.07999 * 120.45167 * 359.96025 * 23 22 13 39 39 H 1.07998 * 120.75477 * 180.25718 * 24 23 22 40 40 H 1.07993 * 120.34151 * 179.77627 * 25 24 23 41 41 H 1.08001 * 119.57306 * 180.27077 * 26 25 24 42 42 H 1.08001 * 120.14841 * 0.02562 * 28 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0635 1.2002 0.0000 4 8 1.4020 2.2190 -0.0005 5 6 3.5389 1.2775 0.0006 6 6 4.3015 0.1115 -0.1105 7 6 5.6804 0.1818 -0.1107 8 6 6.4956 -1.0799 -0.2314 9 6 6.3158 1.4027 -0.0008 10 6 5.5660 2.5768 0.1110 11 6 6.2474 3.8819 0.2279 12 8 7.2591 4.0989 -0.4103 13 7 5.7476 4.8325 1.0424 14 6 6.3100 6.0817 1.0632 15 1 6.4034 6.6163 1.9969 16 6 6.7601 6.6609 -0.1173 17 7 6.2899 6.2482 -1.2724 18 14 8.0338 8.0261 -0.0613 19 1 8.4881 8.2222 1.3389 20 1 9.1942 7.6557 -0.9108 21 1 7.4319 9.2858 -0.5674 22 6 4.6589 4.5448 1.8631 23 6 4.6145 3.3364 2.5505 24 6 3.5303 3.0659 3.3667 25 6 2.5189 4.0124 3.4596 26 6 2.6286 5.1916 2.7482 27 7 3.6764 5.4242 1.9819 28 6 4.1735 2.5125 0.1175 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8901 31 1 -0.3633 -1.0277 -0.0005 32 1 3.8109 -0.8469 -0.1964 33 1 6.6974 -1.4787 0.7627 34 1 5.9410 -1.8167 -0.8126 35 1 7.4379 -0.8571 -0.7317 36 1 7.3948 1.4505 -0.0020 37 1 6.6554 6.6009 -2.0988 38 1 5.4172 2.6206 2.4516 39 1 3.4704 2.1380 3.9159 40 1 1.6574 3.8306 4.0849 41 1 1.8463 5.9327 2.8209 42 1 3.5890 3.4161 0.2084 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001437244701.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:32 Heat of formation + Delta-G solvation = -26.178504 kcal Electronic energy + Delta-G solvation = -30167.168062 eV Core-core repulsion = 26078.713349 eV Total energy + Delta-G solvation = -4088.454713 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.126 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.73838 -40.06648 -38.73321 -37.73106 -36.34573 -34.51568 -33.04509 -32.19570 -31.76704 -31.02650 -29.15463 -27.78954 -26.92167 -25.51053 -23.95549 -23.34391 -22.67703 -22.01201 -20.34903 -19.77259 -17.85795 -17.61965 -16.93514 -16.31864 -16.24970 -15.92406 -15.78037 -15.53354 -15.13096 -14.64334 -14.26237 -14.02793 -13.76282 -13.67428 -13.53047 -13.25155 -13.08800 -12.80592 -12.76115 -12.52568 -12.30676 -12.08547 -11.87461 -11.61428 -11.46923 -11.32043 -11.16602 -10.95452 -10.81696 -10.79122 -10.40477 -10.31688 -9.51373 -9.30371 -8.93355 -8.77247 -8.66185 -8.54527 -8.25866 -7.25398 -6.34312 -4.03923 0.83367 1.30106 1.76541 1.96525 2.61999 2.68492 3.25895 3.33147 3.37082 3.63655 4.01446 4.19646 4.44301 4.59697 4.68994 4.86236 4.94707 5.02098 5.10202 5.18244 5.25321 5.33134 5.33616 5.36916 5.41468 5.51993 5.54453 5.62132 5.67029 5.74177 5.81046 5.98641 6.01757 6.19771 6.27958 6.28646 6.41116 6.56621 6.60055 6.64911 6.75814 6.95831 7.22383 7.48662 7.82542 7.97233 8.43141 8.78599 8.93700 9.35009 9.77967 10.73312 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.011641 B = 0.004874 C = 0.004001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2404.815028 B = 5743.177586 C = 6997.177794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.358 6.358 3 C 0.509 3.491 4 O -0.497 6.497 5 C -0.133 4.133 6 C -0.061 4.061 7 C -0.109 4.109 8 C -0.109 4.109 9 C -0.046 4.046 10 C -0.107 4.107 11 C 0.526 3.474 12 O -0.497 6.497 13 N -0.378 5.378 14 C -0.333 4.333 15 H 0.093 0.907 16 C 0.071 3.929 17 N -0.819 5.819 18 Si 0.921 3.079 19 H -0.267 1.267 20 H -0.278 1.278 21 H -0.281 1.281 22 C 0.362 3.638 23 C -0.212 4.212 24 C -0.057 4.057 25 C -0.226 4.226 26 C 0.128 3.872 27 N -0.489 5.489 28 C -0.017 4.017 29 H 0.063 0.937 30 H 0.062 0.938 31 H 0.100 0.900 32 H 0.135 0.865 33 H 0.070 0.930 34 H 0.066 0.934 35 H 0.068 0.932 36 H 0.136 0.864 37 H 0.271 0.729 38 H 0.125 0.875 39 H 0.123 0.877 40 H 0.122 0.878 41 H 0.147 0.853 42 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.228 -15.246 5.096 17.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.275 6.275 3 C 0.354 3.646 4 O -0.385 6.385 5 C -0.134 4.134 6 C -0.080 4.080 7 C -0.110 4.110 8 C -0.165 4.165 9 C -0.065 4.065 10 C -0.110 4.110 11 C 0.315 3.685 12 O -0.371 6.371 13 N -0.090 5.090 14 C -0.458 4.458 15 H 0.111 0.889 16 C -0.141 4.141 17 N -0.451 5.451 18 Si 0.747 3.253 19 H -0.191 1.191 20 H -0.203 1.203 21 H -0.208 1.208 22 C 0.133 3.867 23 C -0.236 4.236 24 C -0.083 4.083 25 C -0.248 4.248 26 C -0.032 4.032 27 N -0.203 5.203 28 C -0.036 4.036 29 H 0.082 0.918 30 H 0.081 0.919 31 H 0.118 0.882 32 H 0.153 0.847 33 H 0.089 0.911 34 H 0.085 0.915 35 H 0.087 0.913 36 H 0.154 0.846 37 H 0.081 0.919 38 H 0.143 0.857 39 H 0.141 0.859 40 H 0.140 0.860 41 H 0.164 0.836 42 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -6.778 -13.952 3.987 16.016 hybrid contribution -0.044 0.028 0.317 0.321 sum -6.822 -13.925 4.304 16.092 Atomic orbital electron populations 1.23240 0.76344 1.03420 1.02682 1.86526 1.23268 1.32914 1.84773 1.21227 0.89130 0.81356 0.72880 1.90869 1.66597 1.35864 1.45132 1.18859 0.88715 0.94794 1.11047 1.21276 0.93124 0.97382 0.96185 1.19733 0.93515 0.95335 1.02368 1.20744 0.99436 0.94068 1.02275 1.21326 1.00555 0.90287 0.94320 1.20286 0.92991 0.95518 1.02241 1.17718 0.85087 0.82040 0.83662 1.90638 1.24053 1.78912 1.43522 1.41109 1.21521 1.11405 1.34974 1.19265 1.39369 0.92529 0.94673 0.88949 1.25267 0.97031 0.97269 0.94578 1.69903 1.35505 1.41668 0.98017 0.86009 0.80660 0.79935 0.78735 1.19147 1.20344 1.20758 1.19000 0.86848 0.88795 0.92051 1.21791 1.01426 0.99170 1.01174 1.21155 0.92961 0.98346 0.95843 1.21759 1.00866 0.96643 1.05490 1.22483 0.94539 0.95160 0.91043 1.67453 1.00460 1.33947 1.18450 1.21585 0.93795 0.96980 0.91245 0.91844 0.91927 0.88186 0.84724 0.91120 0.91482 0.91251 0.84634 0.91857 0.85660 0.85931 0.86037 0.83609 0.84427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.36 10.56 101.05 1.07 1.42 16 2 O -0.36 -4.68 9.82 -40.51 -0.40 -5.08 16 3 C 0.51 8.39 7.89 34.62 0.27 8.67 16 4 O -0.50 -9.62 16.14 -19.24 -0.31 -9.93 16 5 C -0.13 -2.23 5.87 -105.03 -0.62 -2.85 16 6 C -0.06 -0.84 9.26 -39.07 -0.36 -1.20 16 7 C -0.11 -1.49 5.87 -104.74 -0.61 -2.10 16 8 C -0.11 -1.05 10.00 36.01 0.36 -0.69 16 9 C -0.05 -0.77 9.26 -39.07 -0.36 -1.14 16 10 C -0.11 -2.22 3.73 -105.03 -0.39 -2.61 16 11 C 0.53 13.47 6.28 -12.40 -0.08 13.39 16 12 O -0.50 -14.17 14.53 5.31 0.08 -14.09 16 13 N -0.38 -9.90 2.74 -61.76 -0.17 -10.07 16 14 C -0.33 -9.35 8.97 -14.96 -0.13 -9.48 16 15 H 0.09 2.55 7.92 -52.49 -0.42 2.13 16 16 C 0.07 2.00 4.27 -17.48 -0.07 1.93 16 17 N -0.82 -24.28 11.62 55.50 0.64 -23.63 16 18 Si 0.92 21.74 29.61 -169.99 -5.03 16.71 16 19 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 20 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 21 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 22 C 0.36 8.36 4.44 -154.70 -0.69 7.67 16 23 C -0.21 -4.06 6.62 -39.21 -0.26 -4.32 16 24 C -0.06 -0.92 10.17 -39.31 -0.40 -1.32 16 25 C -0.23 -3.58 10.11 -39.39 -0.40 -3.97 16 26 C 0.13 2.34 11.18 -17.56 -0.20 2.15 16 27 N -0.49 -11.25 10.02 -12.35 -0.12 -11.37 16 28 C -0.02 -0.34 6.32 -38.74 -0.24 -0.59 16 29 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 30 H 0.06 0.61 8.14 -51.92 -0.42 0.19 16 31 H 0.10 0.62 8.14 -51.93 -0.42 0.19 16 32 H 0.13 1.48 7.61 -52.48 -0.40 1.08 16 33 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.07 0.54 8.08 -51.93 -0.42 0.12 16 35 H 0.07 0.65 8.08 -51.93 -0.42 0.23 16 36 H 0.14 2.19 8.04 -52.48 -0.42 1.77 16 37 H 0.27 7.61 8.31 -40.82 -0.34 7.27 16 38 H 0.13 2.30 6.67 -52.49 -0.35 1.95 16 39 H 0.12 1.57 8.06 -52.49 -0.42 1.15 16 40 H 0.12 1.52 8.06 -52.49 -0.42 1.10 16 41 H 0.15 2.22 8.06 -52.49 -0.42 1.80 16 42 H 0.14 3.21 5.98 -52.49 -0.31 2.90 16 LS Contribution 364.00 15.07 5.49 5.49 Total: -1.00 -34.98 364.00 -7.78 -42.76 By element: Atomic # 1 Polarization: 9.09 SS G_CDS: -4.83 Total: 4.26 kcal Atomic # 6 Polarization: 8.08 SS G_CDS: -3.12 Total: 4.96 kcal Atomic # 7 Polarization: -45.43 SS G_CDS: 0.35 Total: -45.08 kcal Atomic # 8 Polarization: -28.47 SS G_CDS: -0.63 Total: -29.10 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.03 Total: 16.71 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -34.98 -7.78 -42.76 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001437244701.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.585 kcal (2) G-P(sol) polarization free energy of solvation -34.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.763 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds