Wall clock time and date at job start Sat Apr 11 2020 05:55:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45193 * 1 3 3 C 1.34707 * 117.00060 * 2 1 4 4 O 1.21470 * 120.00125 * 359.97438 * 3 2 1 5 5 C 1.47747 * 119.99812 * 179.97438 * 3 2 1 6 6 C 1.39763 * 120.07829 * 5.29549 * 5 3 2 7 7 C 1.38067 * 120.15930 * 179.97438 * 6 5 3 8 8 C 1.50700 * 119.84554 * 180.02562 * 7 6 5 9 9 C 1.38077 * 120.30859 * 0.02562 * 7 6 5 10 10 C 1.39757 * 120.15160 * 359.97438 * 9 7 6 11 11 C 1.47694 * 120.07925 * 180.02562 * 10 9 7 12 12 O 1.21567 * 120.00580 * 38.17122 * 11 10 9 13 13 N 1.34783 * 119.99581 * 218.17146 * 11 10 9 14 14 C 1.37014 * 119.99697 * 185.72265 * 13 11 10 15 15 H 1.07997 * 119.99944 * 218.19387 * 14 13 11 16 16 C 1.38978 * 120.00142 * 38.19396 * 14 13 11 17 17 N 1.31368 * 120.00021 * 21.73461 * 16 14 13 18 18 Si 1.86796 * 119.99968 * 201.73126 * 16 14 13 19 19 H 1.48505 * 109.46911 * 5.00704 * 18 16 14 20 20 H 1.48505 * 109.47043 * 125.00183 * 18 16 14 21 21 H 1.48501 * 109.47261 * 245.00448 * 18 16 14 22 22 C 1.39342 * 120.00419 * 5.71733 * 13 11 10 23 23 C 1.39090 * 119.69441 * 43.02503 * 22 13 11 24 24 C 1.38380 * 119.09600 * 179.72453 * 23 22 13 25 25 C 1.38831 * 118.49223 * 0.49276 * 24 23 22 26 26 C 1.38151 * 119.31477 * 359.51338 * 25 24 23 27 27 N 1.31878 * 120.85420 * 0.24112 * 26 25 24 28 28 C 1.39336 * 120.07583 * 185.56595 * 5 3 2 29 29 H 1.08998 * 109.47444 * 300.00302 * 1 2 3 30 30 H 1.09007 * 109.46831 * 59.99990 * 1 2 3 31 31 H 1.09000 * 109.47216 * 179.97438 * 1 2 3 32 32 H 1.08003 * 119.91994 * 359.97438 * 6 5 3 33 33 H 1.08999 * 109.47471 * 269.98386 * 8 7 6 34 34 H 1.09003 * 109.47287 * 29.97665 * 8 7 6 35 35 H 1.08992 * 109.47182 * 149.97697 * 8 7 6 36 36 H 1.08006 * 119.92449 * 180.02562 * 9 7 6 37 37 H 0.97000 * 120.00269 * 184.96529 * 17 16 14 38 38 H 1.07999 * 120.45167 * 359.96025 * 23 22 13 39 39 H 1.07998 * 120.75477 * 180.25718 * 24 23 22 40 40 H 1.07993 * 120.34151 * 179.77627 * 25 24 23 41 41 H 1.08001 * 119.57306 * 180.27077 * 26 25 24 42 42 H 1.08001 * 120.14841 * 0.02562 * 28 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0635 1.2002 0.0000 4 8 1.4020 2.2190 -0.0005 5 6 3.5389 1.2775 0.0006 6 6 4.3015 0.1115 -0.1105 7 6 5.6804 0.1818 -0.1107 8 6 6.4956 -1.0799 -0.2314 9 6 6.3158 1.4027 -0.0008 10 6 5.5660 2.5768 0.1110 11 6 6.2474 3.8819 0.2279 12 8 7.2591 4.0989 -0.4103 13 7 5.7476 4.8325 1.0424 14 6 6.3100 6.0817 1.0632 15 1 6.4034 6.6163 1.9969 16 6 6.7601 6.6609 -0.1173 17 7 6.2899 6.2482 -1.2724 18 14 8.0338 8.0261 -0.0613 19 1 8.4881 8.2222 1.3389 20 1 9.1942 7.6557 -0.9108 21 1 7.4319 9.2858 -0.5674 22 6 4.6589 4.5448 1.8631 23 6 4.6145 3.3364 2.5505 24 6 3.5303 3.0659 3.3667 25 6 2.5189 4.0124 3.4596 26 6 2.6286 5.1916 2.7482 27 7 3.6764 5.4242 1.9819 28 6 4.1735 2.5125 0.1175 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8901 31 1 -0.3633 -1.0277 -0.0005 32 1 3.8109 -0.8469 -0.1964 33 1 6.6974 -1.4787 0.7627 34 1 5.9410 -1.8167 -0.8126 35 1 7.4379 -0.8571 -0.7317 36 1 7.3948 1.4505 -0.0020 37 1 6.6554 6.6009 -2.0988 38 1 5.4172 2.6206 2.4516 39 1 3.4704 2.1380 3.9159 40 1 1.6574 3.8306 4.0849 41 1 1.8463 5.9327 2.8209 42 1 3.5890 3.4161 0.2084 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001437244701.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:31 Heat of formation + Delta-G solvation = -48.539232 kcal Electronic energy + Delta-G solvation = -30168.137696 eV Core-core repulsion = 26078.713349 eV Total energy + Delta-G solvation = -4089.424347 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.126 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.21293 -41.42324 -40.17080 -39.32727 -37.53203 -36.36567 -34.58140 -33.78295 -33.23380 -32.50011 -30.76226 -28.68366 -28.02579 -27.30260 -25.35312 -24.81771 -24.15107 -23.55334 -21.59241 -21.37191 -19.42922 -19.23631 -18.20305 -17.75927 -17.46464 -17.42433 -17.18972 -16.96542 -16.57924 -16.49072 -15.76233 -15.72569 -15.17002 -14.90843 -14.83609 -14.54728 -14.40373 -14.21734 -14.09760 -13.91829 -13.58946 -13.16932 -13.09173 -13.06297 -12.87941 -12.83816 -12.67630 -12.59205 -12.44581 -12.17274 -11.82474 -11.68024 -11.35704 -10.78764 -10.73651 -10.38176 -10.19983 -10.11956 -9.71266 -9.02890 -8.40663 -6.17149 -0.46885 -0.09280 0.31040 0.53354 1.30681 1.34979 1.39539 1.49833 1.57171 2.05493 2.24778 2.64498 2.70017 2.92788 3.22758 3.47592 3.59353 3.72858 3.87529 3.96801 4.07401 4.12166 4.23880 4.29195 4.33238 4.34009 4.35836 4.45005 4.55418 4.73165 4.74380 4.84652 4.87226 4.95721 5.08313 5.14658 5.19774 5.26653 5.27945 5.32119 5.33285 5.43154 5.74276 5.81046 6.01829 6.59029 6.62541 6.81864 7.13580 7.54083 7.87617 8.67540 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.011641 B = 0.004874 C = 0.004001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2404.815028 B = 5743.177586 C = 6997.177794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.345 6.345 3 C 0.515 3.485 4 O -0.535 6.535 5 C -0.137 4.137 6 C -0.035 4.035 7 C -0.089 4.089 8 C -0.107 4.107 9 C -0.048 4.048 10 C -0.131 4.131 11 C 0.517 3.483 12 O -0.549 6.549 13 N -0.401 5.401 14 C -0.356 4.356 15 H 0.082 0.918 16 C 0.023 3.977 17 N -0.866 5.866 18 Si 0.984 3.016 19 H -0.256 1.256 20 H -0.280 1.280 21 H -0.272 1.272 22 C 0.334 3.666 23 C -0.204 4.204 24 C -0.051 4.051 25 C -0.197 4.197 26 C 0.106 3.894 27 N -0.537 5.537 28 C -0.030 4.030 29 H 0.063 0.937 30 H 0.057 0.943 31 H 0.143 0.857 32 H 0.179 0.821 33 H 0.093 0.907 34 H 0.094 0.906 35 H 0.071 0.929 36 H 0.136 0.864 37 H 0.267 0.733 38 H 0.129 0.871 39 H 0.170 0.830 40 H 0.170 0.830 41 H 0.171 0.829 42 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.052 -19.803 6.993 22.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.261 6.261 3 C 0.361 3.639 4 O -0.426 6.426 5 C -0.138 4.138 6 C -0.052 4.052 7 C -0.089 4.089 8 C -0.164 4.164 9 C -0.067 4.067 10 C -0.134 4.134 11 C 0.308 3.692 12 O -0.428 6.428 13 N -0.114 5.114 14 C -0.482 4.482 15 H 0.099 0.901 16 C -0.185 4.185 17 N -0.501 5.501 18 Si 0.806 3.194 19 H -0.179 1.179 20 H -0.206 1.206 21 H -0.197 1.197 22 C 0.106 3.894 23 C -0.227 4.227 24 C -0.077 4.077 25 C -0.218 4.218 26 C -0.052 4.052 27 N -0.252 5.252 28 C -0.050 4.050 29 H 0.082 0.918 30 H 0.075 0.925 31 H 0.161 0.839 32 H 0.196 0.804 33 H 0.112 0.888 34 H 0.113 0.887 35 H 0.090 0.910 36 H 0.153 0.847 37 H 0.076 0.924 38 H 0.147 0.853 39 H 0.188 0.812 40 H 0.187 0.813 41 H 0.188 0.812 42 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -8.665 -18.534 5.948 21.307 hybrid contribution 0.237 1.182 -0.113 1.210 sum -8.428 -17.352 5.835 20.154 Atomic orbital electron populations 1.23639 0.74101 1.06189 1.02529 1.86506 1.25280 1.30496 1.83846 1.21152 0.88891 0.81813 0.72027 1.90860 1.67319 1.37428 1.47021 1.18936 0.89502 0.94443 1.10917 1.21735 0.92908 0.97758 0.92848 1.20173 0.93936 0.95490 0.99304 1.20884 0.99157 0.92132 1.04194 1.21481 1.00575 0.90466 0.94169 1.19942 0.93445 0.94238 1.05805 1.18459 0.84833 0.83582 0.82298 1.90559 1.26405 1.80472 1.45368 1.41223 1.23167 1.10949 1.36108 1.19335 1.40900 0.93644 0.94297 0.90064 1.26172 0.98704 0.99511 0.94072 1.70016 1.37355 1.44253 0.98436 0.85071 0.77966 0.77259 0.79068 1.17924 1.20607 1.19721 1.19128 0.86958 0.90825 0.92474 1.21868 1.02578 0.97549 1.00701 1.21708 0.91351 0.99990 0.94617 1.22294 1.01557 0.94648 1.03317 1.23055 0.93879 0.97272 0.91040 1.67302 1.01975 1.35447 1.20428 1.21122 0.93077 0.96971 0.93784 0.91793 0.92453 0.83874 0.80367 0.88811 0.88729 0.91014 0.84650 0.92388 0.85345 0.81224 0.81252 0.81204 0.88648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.44 10.56 113.37 1.20 1.64 16 2 O -0.35 -7.66 9.82 -56.17 -0.55 -8.21 16 3 C 0.52 15.96 7.89 70.34 0.55 16.51 16 4 O -0.54 -20.58 16.14 19.93 0.32 -20.26 16 5 C -0.14 -4.37 5.87 -20.13 -0.12 -4.49 16 6 C -0.03 -0.80 9.26 22.60 0.21 -0.59 16 7 C -0.09 -2.11 5.87 -19.94 -0.12 -2.23 16 8 C -0.11 -1.52 10.00 71.24 0.71 -0.81 16 9 C -0.05 -1.61 9.26 22.60 0.21 -1.40 16 10 C -0.13 -5.70 3.73 -20.13 -0.08 -5.77 16 11 C 0.52 28.67 6.28 86.74 0.54 29.21 16 12 O -0.55 -34.06 14.53 -3.93 -0.06 -34.12 16 13 N -0.40 -22.73 2.74 -467.56 -1.28 -24.01 16 14 C -0.36 -21.62 8.97 84.06 0.75 -20.87 16 15 H 0.08 4.88 7.92 -2.91 -0.02 4.85 16 16 C 0.02 1.36 4.27 84.94 0.36 1.73 16 17 N -0.87 -55.67 11.62 21.67 0.25 -55.42 16 18 Si 0.98 47.65 29.61 68.60 2.03 49.68 16 19 H -0.26 -11.67 7.11 99.48 0.71 -10.97 16 20 H -0.28 -13.52 7.11 99.48 0.71 -12.81 16 21 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16 22 C 0.33 16.27 4.44 132.94 0.59 16.86 16 23 C -0.20 -7.85 6.62 22.51 0.15 -7.70 16 24 C -0.05 -1.50 10.17 22.45 0.23 -1.27 16 25 C -0.20 -5.66 10.11 22.39 0.23 -5.44 16 26 C 0.11 3.86 11.18 84.67 0.95 4.81 16 27 N -0.54 -26.01 10.02 -192.99 -1.93 -27.95 16 28 C -0.03 -1.25 6.32 22.82 0.14 -1.10 16 29 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 30 H 0.06 0.98 8.14 -2.38 -0.02 0.96 16 31 H 0.14 1.01 8.14 -2.39 -0.02 0.99 16 32 H 0.18 2.68 7.61 -2.91 -0.02 2.66 16 33 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 34 H 0.09 0.91 8.08 -2.39 -0.02 0.89 16 35 H 0.07 1.05 8.08 -2.39 -0.02 1.03 16 36 H 0.14 4.48 8.04 -2.91 -0.02 4.46 16 37 H 0.27 16.27 8.31 -92.71 -0.77 15.50 16 38 H 0.13 4.77 6.67 -2.91 -0.02 4.75 16 39 H 0.17 3.41 8.06 -2.91 -0.02 3.39 16 40 H 0.17 3.28 8.06 -2.91 -0.02 3.26 16 41 H 0.17 5.09 8.06 -2.91 -0.02 5.06 16 42 H 0.10 4.78 5.98 -2.91 -0.02 4.76 16 Total: -1.00 -88.61 364.00 6.36 -82.25 By element: Atomic # 1 Polarization: 17.89 SS G_CDS: 1.06 Total: 18.95 kcal Atomic # 6 Polarization: 12.56 SS G_CDS: 6.52 Total: 19.08 kcal Atomic # 7 Polarization: -104.42 SS G_CDS: -2.96 Total: -107.38 kcal Atomic # 8 Polarization: -62.30 SS G_CDS: -0.29 Total: -62.58 kcal Atomic # 14 Polarization: 47.65 SS G_CDS: 2.03 Total: 49.68 kcal Total: -88.61 6.36 -82.25 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001437244701.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.715 kcal (2) G-P(sol) polarization free energy of solvation -88.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.254 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds