Wall clock time and date at job start Sat Apr 11 2020 05:55:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50694 * 109.70472 * 2 1 4 4 O 1.21279 * 119.99822 * 264.41624 * 3 2 1 5 5 N 1.34780 * 120.00384 * 84.41746 * 3 2 1 6 6 C 1.39273 * 119.99923 * 174.84342 * 5 3 2 7 7 C 1.39668 * 119.57254 * 185.35636 * 6 5 3 8 8 C 1.38651 * 119.49822 * 179.79336 * 7 6 5 9 9 C 1.38348 * 118.66501 * 0.47691 * 8 7 6 10 10 C 1.40576 * 119.13440 * 359.74842 * 9 8 7 11 11 C 1.41336 * 119.79215 * 179.97438 * 10 9 8 12 12 H 1.07995 * 119.99474 * 0.02861 * 11 10 9 13 13 C 1.40025 * 119.99803 * 180.02562 * 11 10 9 14 14 N 1.30740 * 120.00132 * 0.02562 * 13 11 10 15 15 Si 1.86808 * 119.99644 * 179.97438 * 13 11 10 16 16 H 1.48496 * 109.46992 * 0.02562 * 15 13 11 17 17 H 1.48505 * 109.46389 * 120.00428 * 15 13 11 18 18 H 1.48494 * 109.46994 * 240.00301 * 15 13 11 19 19 N 1.31900 * 119.57574 * 5.63863 * 6 5 3 20 20 C 1.53469 * 109.70694 * 239.41685 * 2 1 3 21 21 O 1.43175 * 108.22963 * 180.56081 * 20 2 1 22 22 C 1.36112 * 116.69524 * 46.25586 * 21 20 2 23 23 C 1.38707 * 119.39234 * 162.79141 * 22 21 20 24 24 C 1.38188 * 120.06450 * 179.86032 * 23 22 21 25 25 C 1.38249 * 120.11342 * 359.96487 * 24 23 22 26 26 C 1.38190 * 120.11473 * 0.26500 * 25 24 23 27 27 C 1.38701 * 120.06709 * 359.62724 * 26 25 24 28 28 O 1.36107 * 119.39856 * 179.97438 * 27 26 25 29 29 H 1.08998 * 109.47240 * 180.58469 * 1 2 3 30 30 H 1.09001 * 109.47165 * 300.58116 * 1 2 3 31 31 H 1.09001 * 109.46982 * 60.58291 * 1 2 3 32 32 H 0.96999 * 119.99769 * 354.84565 * 5 3 2 33 33 H 1.08004 * 120.25074 * 359.97438 * 7 6 5 34 34 H 1.07994 * 120.67051 * 180.23052 * 8 7 6 35 35 H 1.08002 * 120.43704 * 179.77047 * 9 8 7 36 36 H 0.97008 * 119.99980 * 179.97438 * 14 13 11 37 37 H 1.08993 * 109.71483 * 60.87257 * 20 2 1 38 38 H 1.09008 * 109.71143 * 300.23624 * 20 2 1 39 39 H 1.08004 * 119.96276 * 359.88159 * 23 22 21 40 40 H 1.08008 * 119.94112 * 179.97438 * 24 23 22 41 41 H 1.08005 * 119.94493 * 180.02562 * 25 24 23 42 42 H 1.08000 * 119.96864 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0381 1.4187 0.0000 4 8 2.3388 1.9551 -1.0453 5 7 2.1585 2.0915 1.1617 6 6 2.7280 3.3624 1.1745 7 6 2.9514 4.0053 2.3941 8 6 3.5224 5.2687 2.4054 9 6 3.8463 5.8614 1.1979 10 6 3.5922 5.1647 0.0036 11 6 3.9171 5.7573 -1.2377 12 1 4.3595 6.7420 -1.2666 13 6 3.6653 5.0675 -2.4300 14 7 3.1293 3.8755 -2.3949 15 14 4.0941 5.8510 -4.0707 16 1 4.6843 7.1937 -3.8388 17 1 5.0753 4.9961 -4.7860 18 1 2.8639 5.9856 -4.8914 19 7 3.0443 3.9456 0.0345 20 6 2.0475 -0.7351 -1.2438 21 8 3.4787 -0.7278 -1.2053 22 6 4.0602 -1.0570 -0.0195 23 6 5.3991 -1.4185 0.0050 24 6 6.0042 -1.7526 1.2016 25 6 5.2774 -1.7267 2.3774 26 6 3.9419 -1.3719 2.3593 27 6 3.3290 -1.0334 1.1621 28 8 2.0128 -0.6866 1.1599 29 1 -0.3633 -1.0276 0.0105 30 1 -0.3633 0.5228 0.8847 31 1 -0.3633 0.5048 -0.8952 32 1 1.8484 1.6905 1.9887 33 1 2.6841 3.5208 3.3216 34 1 3.7070 5.7816 3.3377 35 1 4.2889 6.8462 1.1731 36 1 2.9546 3.3978 -3.2209 37 1 1.7013 -0.2253 -2.1428 38 1 1.6850 -1.7631 -1.2407 39 1 5.9693 -1.4387 -0.9120 40 1 7.0468 -2.0342 1.2184 41 1 5.7532 -1.9878 3.3112 42 1 3.3763 -1.3529 3.2792 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001462446011.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:44 Heat of formation + Delta-G solvation = -11.939753 kcal Electronic energy + Delta-G solvation = -30482.088356 eV Core-core repulsion = 26394.251081 eV Total energy + Delta-G solvation = -4087.837275 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.126 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.52430 -39.17571 -37.93238 -37.18034 -36.94489 -34.17166 -33.00890 -32.81230 -30.56724 -30.31107 -29.15388 -28.92573 -26.67731 -25.63884 -24.21914 -22.73229 -22.53856 -21.46325 -20.67799 -19.22402 -18.66162 -17.97700 -17.20056 -16.83071 -16.24656 -15.40401 -15.27968 -15.04769 -14.71228 -14.54088 -14.43251 -14.21097 -13.88954 -13.77689 -13.54430 -13.49864 -12.95347 -12.87221 -12.73626 -12.37265 -12.01626 -11.95559 -11.81017 -11.66995 -11.51800 -11.17118 -11.02153 -10.93982 -10.63888 -10.48452 -10.28117 -9.92165 -9.70472 -9.12812 -9.03150 -8.53155 -7.97420 -7.93346 -7.23316 -6.98073 -6.15112 -4.40015 1.37556 1.42287 2.66213 2.93467 3.08083 3.17343 3.20869 3.25007 3.27173 3.60502 3.69524 3.83549 4.06171 4.23826 4.65935 4.82562 4.88978 4.95681 5.05176 5.19057 5.25484 5.36579 5.45844 5.50028 5.54261 5.60322 5.90353 5.93994 6.03514 6.10985 6.20428 6.28403 6.48668 6.52556 6.64392 6.70538 6.81768 6.84523 7.00318 7.22481 7.49204 7.55891 7.61043 7.80910 8.02963 8.17903 8.43874 8.71391 9.03225 9.13647 10.22808 10.47426 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.011259 B = 0.004637 C = 0.004252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2486.227877 B = 6036.350990 C = 6583.755136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.057 3.943 3 C 0.462 3.538 4 O -0.386 6.386 5 N -0.654 5.654 6 C 0.372 3.628 7 C -0.354 4.354 8 C -0.036 4.036 9 C -0.304 4.304 10 C 0.271 3.729 11 C -0.425 4.425 12 H 0.083 0.917 13 C 0.058 3.942 14 N -0.656 5.656 15 Si 0.896 3.104 16 H -0.262 1.262 17 H -0.275 1.275 18 H -0.275 1.275 19 N -0.473 5.473 20 C 0.052 3.948 21 O -0.291 6.291 22 C 0.063 3.937 23 C -0.117 4.117 24 C -0.116 4.116 25 C -0.123 4.123 26 C -0.112 4.112 27 C 0.049 3.951 28 O -0.298 6.298 29 H 0.076 0.924 30 H 0.076 0.924 31 H 0.089 0.911 32 H 0.402 0.598 33 H 0.091 0.909 34 H 0.096 0.904 35 H 0.096 0.904 36 H 0.271 0.729 37 H 0.130 0.870 38 H 0.078 0.922 39 H 0.132 0.868 40 H 0.129 0.871 41 H 0.129 0.871 42 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.411 -13.551 4.772 14.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.014 3.986 3 C 0.241 3.759 4 O -0.248 6.248 5 N -0.301 5.301 6 C 0.133 3.867 7 C -0.380 4.380 8 C -0.060 4.060 9 C -0.327 4.327 10 C 0.146 3.854 11 C -0.455 4.455 12 H 0.101 0.899 13 C -0.171 4.171 14 N -0.275 5.275 15 Si 0.720 3.280 16 H -0.186 1.186 17 H -0.200 1.200 18 H -0.201 1.201 19 N -0.192 5.192 20 C -0.024 4.024 21 O -0.204 6.204 22 C 0.017 3.983 23 C -0.135 4.135 24 C -0.134 4.134 25 C -0.141 4.141 26 C -0.130 4.130 27 C 0.005 3.995 28 O -0.213 6.213 29 H 0.095 0.905 30 H 0.095 0.905 31 H 0.108 0.892 32 H 0.236 0.764 33 H 0.109 0.891 34 H 0.114 0.886 35 H 0.115 0.885 36 H 0.083 0.917 37 H 0.148 0.852 38 H 0.096 0.904 39 H 0.150 0.850 40 H 0.147 0.853 41 H 0.147 0.853 42 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -2.468 -13.776 2.924 14.298 hybrid contribution 0.044 0.600 0.626 0.868 sum -2.424 -13.176 3.550 13.859 Atomic orbital electron populations 1.21706 0.88876 1.03848 1.04602 1.23082 0.97820 0.91034 0.86628 1.20622 0.82141 0.87095 0.86014 1.91189 1.39238 1.65627 1.28784 1.43241 1.60970 1.15946 1.09921 1.18593 0.92327 0.84606 0.91151 1.20487 1.22164 1.00175 0.95150 1.20556 0.95279 0.93721 0.96458 1.21627 1.15548 1.02047 0.93504 1.18388 0.87884 0.86979 0.92170 1.19611 1.34278 1.02219 0.89410 0.89908 1.26168 0.95241 0.95020 1.00623 1.70320 1.21603 1.07549 1.28053 0.86462 0.78863 0.80345 0.82328 1.18590 1.20034 1.20061 1.68665 1.17693 1.10668 1.22165 1.23459 0.79298 1.00300 0.99322 1.86410 1.20554 1.84325 1.29143 1.19020 0.94006 1.00687 0.84570 1.20443 0.92042 1.01561 0.99498 1.20872 0.99921 1.00936 0.91678 1.20841 0.93168 1.01656 0.98442 1.20383 0.94757 1.02521 0.95369 1.18880 0.84355 1.02717 0.93582 1.86289 1.21801 1.72503 1.40723 0.90549 0.90483 0.89234 0.76449 0.89107 0.88581 0.88532 0.91721 0.85226 0.90397 0.84982 0.85327 0.85318 0.84987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.55 8.87 37.16 0.33 -1.22 16 2 C 0.06 0.87 1.04 -91.53 -0.10 0.78 16 3 C 0.46 9.56 5.81 -10.99 -0.06 9.50 16 4 O -0.39 -9.64 11.78 4.74 0.06 -9.59 16 5 N -0.65 -13.67 5.27 -11.40 -0.06 -13.73 16 6 C 0.37 9.34 7.43 -154.98 -1.15 8.19 16 7 C -0.35 -8.22 9.95 -38.90 -0.39 -8.60 16 8 C -0.04 -0.83 10.15 -39.39 -0.40 -1.23 16 9 C -0.30 -7.79 9.83 -38.66 -0.38 -8.17 16 10 C 0.27 7.72 6.55 -85.00 -0.56 7.16 16 11 C -0.42 -11.80 9.14 -37.73 -0.34 -12.15 16 12 H 0.08 2.16 7.85 -52.49 -0.41 1.75 16 13 C 0.06 1.55 5.50 -17.35 -0.10 1.45 16 14 N -0.66 -18.22 9.00 55.55 0.50 -17.72 16 15 Si 0.90 19.41 29.56 -169.99 -5.02 14.39 16 16 H -0.26 -5.56 7.11 56.52 0.40 -5.16 16 17 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 18 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 19 N -0.47 -13.47 5.74 -10.26 -0.06 -13.53 16 20 C 0.05 0.78 5.59 37.40 0.21 0.99 16 21 O -0.29 -5.29 9.95 -37.19 -0.37 -5.66 16 22 C 0.06 1.08 6.31 -39.14 -0.25 0.83 16 23 C -0.12 -1.77 9.96 -39.43 -0.39 -2.16 16 24 C -0.12 -1.47 10.04 -39.60 -0.40 -1.87 16 25 C -0.12 -1.50 10.04 -39.60 -0.40 -1.89 16 26 C -0.11 -1.52 9.96 -39.43 -0.39 -1.91 16 27 C 0.05 0.79 6.17 -39.14 -0.24 0.55 16 28 O -0.30 -4.54 9.24 -32.86 -0.30 -4.84 16 29 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 32 H 0.40 7.05 8.27 -40.82 -0.34 6.71 16 33 H 0.09 1.83 8.06 -52.48 -0.42 1.41 16 34 H 0.10 1.89 8.06 -52.49 -0.42 1.47 16 35 H 0.10 2.29 8.06 -52.49 -0.42 1.87 16 36 H 0.27 7.03 8.29 -40.82 -0.34 6.69 16 37 H 0.13 1.87 7.89 -51.93 -0.41 1.46 16 38 H 0.08 0.92 8.14 -51.92 -0.42 0.50 16 39 H 0.13 1.84 8.06 -52.48 -0.42 1.42 16 40 H 0.13 1.25 8.06 -52.48 -0.42 0.83 16 41 H 0.13 1.17 8.06 -52.48 -0.42 0.75 16 42 H 0.13 1.51 8.06 -52.49 -0.42 1.09 16 LS Contribution 355.46 15.07 5.36 5.36 Total: -1.00 -34.14 355.46 -9.85 -43.99 By element: Atomic # 1 Polarization: 16.04 SS G_CDS: -4.94 Total: 11.09 kcal Atomic # 6 Polarization: -4.76 SS G_CDS: -5.00 Total: -9.76 kcal Atomic # 7 Polarization: -45.36 SS G_CDS: 0.38 Total: -44.98 kcal Atomic # 8 Polarization: -19.47 SS G_CDS: -0.62 Total: -20.09 kcal Atomic # 14 Polarization: 19.41 SS G_CDS: -5.02 Total: 14.39 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -34.14 -9.85 -43.99 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001462446011.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.049 kcal (2) G-P(sol) polarization free energy of solvation -34.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.989 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds