Wall clock time and date at job start Sat Apr 11 2020 05:55:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50694 * 109.70472 * 2 1 4 4 O 1.21279 * 119.99822 * 264.41624 * 3 2 1 5 5 N 1.34780 * 120.00384 * 84.41746 * 3 2 1 6 6 C 1.39273 * 119.99923 * 174.84342 * 5 3 2 7 7 C 1.39668 * 119.57254 * 185.35636 * 6 5 3 8 8 C 1.38651 * 119.49822 * 179.79336 * 7 6 5 9 9 C 1.38348 * 118.66501 * 0.47691 * 8 7 6 10 10 C 1.40576 * 119.13440 * 359.74842 * 9 8 7 11 11 C 1.41336 * 119.79215 * 179.97438 * 10 9 8 12 12 H 1.07995 * 119.99474 * 0.02861 * 11 10 9 13 13 C 1.40025 * 119.99803 * 180.02562 * 11 10 9 14 14 N 1.30740 * 120.00132 * 0.02562 * 13 11 10 15 15 Si 1.86808 * 119.99644 * 179.97438 * 13 11 10 16 16 H 1.48496 * 109.46992 * 0.02562 * 15 13 11 17 17 H 1.48505 * 109.46389 * 120.00428 * 15 13 11 18 18 H 1.48494 * 109.46994 * 240.00301 * 15 13 11 19 19 N 1.31900 * 119.57574 * 5.63863 * 6 5 3 20 20 C 1.53469 * 109.70694 * 239.41685 * 2 1 3 21 21 O 1.43175 * 108.22963 * 180.56081 * 20 2 1 22 22 C 1.36112 * 116.69524 * 46.25586 * 21 20 2 23 23 C 1.38707 * 119.39234 * 162.79141 * 22 21 20 24 24 C 1.38188 * 120.06450 * 179.86032 * 23 22 21 25 25 C 1.38249 * 120.11342 * 359.96487 * 24 23 22 26 26 C 1.38190 * 120.11473 * 0.26500 * 25 24 23 27 27 C 1.38701 * 120.06709 * 359.62724 * 26 25 24 28 28 O 1.36107 * 119.39856 * 179.97438 * 27 26 25 29 29 H 1.08998 * 109.47240 * 180.58469 * 1 2 3 30 30 H 1.09001 * 109.47165 * 300.58116 * 1 2 3 31 31 H 1.09001 * 109.46982 * 60.58291 * 1 2 3 32 32 H 0.96999 * 119.99769 * 354.84565 * 5 3 2 33 33 H 1.08004 * 120.25074 * 359.97438 * 7 6 5 34 34 H 1.07994 * 120.67051 * 180.23052 * 8 7 6 35 35 H 1.08002 * 120.43704 * 179.77047 * 9 8 7 36 36 H 0.97008 * 119.99980 * 179.97438 * 14 13 11 37 37 H 1.08993 * 109.71483 * 60.87257 * 20 2 1 38 38 H 1.09008 * 109.71143 * 300.23624 * 20 2 1 39 39 H 1.08004 * 119.96276 * 359.88159 * 23 22 21 40 40 H 1.08008 * 119.94112 * 179.97438 * 24 23 22 41 41 H 1.08005 * 119.94493 * 180.02562 * 25 24 23 42 42 H 1.08000 * 119.96864 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0381 1.4187 0.0000 4 8 2.3388 1.9551 -1.0453 5 7 2.1585 2.0915 1.1617 6 6 2.7280 3.3624 1.1745 7 6 2.9514 4.0053 2.3941 8 6 3.5224 5.2687 2.4054 9 6 3.8463 5.8614 1.1979 10 6 3.5922 5.1647 0.0036 11 6 3.9171 5.7573 -1.2377 12 1 4.3595 6.7420 -1.2666 13 6 3.6653 5.0675 -2.4300 14 7 3.1293 3.8755 -2.3949 15 14 4.0941 5.8510 -4.0707 16 1 4.6843 7.1937 -3.8388 17 1 5.0753 4.9961 -4.7860 18 1 2.8639 5.9856 -4.8914 19 7 3.0443 3.9456 0.0345 20 6 2.0475 -0.7351 -1.2438 21 8 3.4787 -0.7278 -1.2053 22 6 4.0602 -1.0570 -0.0195 23 6 5.3991 -1.4185 0.0050 24 6 6.0042 -1.7526 1.2016 25 6 5.2774 -1.7267 2.3774 26 6 3.9419 -1.3719 2.3593 27 6 3.3290 -1.0334 1.1621 28 8 2.0128 -0.6866 1.1599 29 1 -0.3633 -1.0276 0.0105 30 1 -0.3633 0.5228 0.8847 31 1 -0.3633 0.5048 -0.8952 32 1 1.8484 1.6905 1.9887 33 1 2.6841 3.5208 3.3216 34 1 3.7070 5.7816 3.3377 35 1 4.2889 6.8462 1.1731 36 1 2.9546 3.3978 -3.2209 37 1 1.7013 -0.2253 -2.1428 38 1 1.6850 -1.7631 -1.2407 39 1 5.9693 -1.4387 -0.9120 40 1 7.0468 -2.0342 1.2184 41 1 5.7532 -1.9878 3.3112 42 1 3.3763 -1.3529 3.2792 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001462446011.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:44 Heat of formation + Delta-G solvation = -32.722991 kcal Electronic energy + Delta-G solvation = -30482.989584 eV Core-core repulsion = 26394.251081 eV Total energy + Delta-G solvation = -4088.738503 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.126 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.74886 -40.80371 -39.48429 -38.40145 -38.33038 -36.00543 -34.88494 -33.97286 -32.25731 -31.64418 -30.95842 -30.09221 -27.79057 -27.55392 -25.60039 -24.11164 -23.67171 -23.31119 -22.33377 -20.60878 -20.03017 -19.55308 -18.71660 -18.06025 -17.96142 -16.80465 -16.55194 -16.43587 -16.32482 -16.11223 -15.87602 -15.62306 -15.48511 -15.14226 -14.91575 -14.80888 -14.69469 -14.20692 -13.82748 -13.77187 -13.66194 -13.24443 -12.95386 -12.93144 -12.81506 -12.76100 -12.59664 -12.57702 -12.35928 -12.10453 -11.77348 -11.56663 -11.41376 -10.91458 -10.73864 -9.93809 -9.66339 -9.19587 -9.02019 -8.88080 -8.08787 -6.44911 0.29051 0.33247 0.83742 1.19586 1.37495 1.47623 1.52258 1.70360 1.90953 2.15882 2.24021 2.32780 2.74422 2.95307 3.07791 3.45866 3.57740 3.74555 4.02408 4.07222 4.11541 4.23247 4.33129 4.33521 4.44510 4.49043 4.58579 4.64540 4.69717 4.81943 4.90064 4.92533 4.99298 5.02096 5.19397 5.20657 5.24907 5.49645 5.63337 5.68767 5.78320 5.86972 5.88958 6.10577 6.30500 6.36839 6.63714 6.78203 7.03831 7.48789 8.28868 8.53395 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.011259 B = 0.004637 C = 0.004252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2486.227877 B = 6036.350990 C = 6583.755136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.069 3.931 3 C 0.454 3.546 4 O -0.435 6.435 5 N -0.647 5.647 6 C 0.349 3.651 7 C -0.347 4.347 8 C -0.033 4.033 9 C -0.327 4.327 10 C 0.236 3.764 11 C -0.464 4.464 12 H 0.086 0.914 13 C 0.011 3.989 14 N -0.690 5.690 15 Si 0.975 3.025 16 H -0.253 1.253 17 H -0.273 1.273 18 H -0.268 1.268 19 N -0.506 5.506 20 C 0.048 3.952 21 O -0.324 6.324 22 C 0.029 3.971 23 C -0.141 4.141 24 C -0.112 4.112 25 C -0.116 4.116 26 C -0.115 4.115 27 C 0.026 3.974 28 O -0.291 6.291 29 H 0.110 0.890 30 H 0.081 0.919 31 H 0.088 0.912 32 H 0.417 0.583 33 H 0.128 0.872 34 H 0.138 0.862 35 H 0.106 0.894 36 H 0.270 0.730 37 H 0.124 0.876 38 H 0.112 0.888 39 H 0.131 0.869 40 H 0.160 0.840 41 H 0.168 0.832 42 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.449 -14.797 6.859 16.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.026 3.974 3 C 0.236 3.764 4 O -0.300 6.300 5 N -0.295 5.295 6 C 0.111 3.889 7 C -0.372 4.372 8 C -0.057 4.057 9 C -0.350 4.350 10 C 0.110 3.890 11 C -0.494 4.494 12 H 0.104 0.896 13 C -0.214 4.214 14 N -0.309 5.309 15 Si 0.796 3.204 16 H -0.177 1.177 17 H -0.198 1.198 18 H -0.193 1.193 19 N -0.225 5.225 20 C -0.028 4.028 21 O -0.239 6.239 22 C -0.016 4.016 23 C -0.159 4.159 24 C -0.130 4.130 25 C -0.134 4.134 26 C -0.133 4.133 27 C -0.019 4.019 28 O -0.206 6.206 29 H 0.129 0.871 30 H 0.100 0.900 31 H 0.107 0.893 32 H 0.254 0.746 33 H 0.146 0.854 34 H 0.156 0.844 35 H 0.124 0.876 36 H 0.080 0.920 37 H 0.142 0.858 38 H 0.129 0.871 39 H 0.149 0.851 40 H 0.178 0.822 41 H 0.185 0.815 42 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -2.526 -15.052 5.068 16.082 hybrid contribution 0.106 0.908 0.184 0.933 sum -2.420 -14.144 5.252 15.280 Atomic orbital electron populations 1.21783 0.85765 1.06172 1.04832 1.22953 0.99732 0.87446 0.87240 1.21586 0.80798 0.88950 0.85083 1.91176 1.41092 1.67393 1.30326 1.43271 1.60456 1.14738 1.11058 1.19117 0.92420 0.86093 0.91320 1.20951 1.20302 1.00071 0.95885 1.21021 0.93700 0.93729 0.97237 1.21817 1.16666 1.02725 0.93834 1.18895 0.88655 0.87783 0.93618 1.19926 1.36133 1.02919 0.90456 0.89576 1.27028 0.94798 0.95424 1.04159 1.70513 1.22737 1.08864 1.28763 0.85276 0.78652 0.79425 0.77090 1.17676 1.19838 1.19272 1.68638 1.18641 1.11076 1.24173 1.23671 0.78222 1.01983 0.98887 1.86337 1.22171 1.84998 1.30348 1.19413 0.95039 1.02369 0.84753 1.20750 0.91828 1.02537 1.00818 1.21305 1.01401 0.99381 0.90897 1.21345 0.92610 0.99776 0.99698 1.20818 0.95613 1.01576 0.95330 1.19206 0.84671 1.03933 0.94084 1.86298 1.21718 1.72184 1.40379 0.87136 0.89999 0.89295 0.74644 0.85434 0.84418 0.87606 0.91951 0.85833 0.87062 0.85148 0.82236 0.81500 0.82647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.78 8.87 71.98 0.64 -2.15 16 2 C 0.07 2.09 1.04 -11.38 -0.01 2.08 16 3 C 0.45 19.21 5.81 87.65 0.51 19.72 16 4 O -0.43 -22.82 11.78 -2.24 -0.03 -22.85 16 5 N -0.65 -27.06 5.27 -308.37 -1.62 -28.68 16 6 C 0.35 17.68 7.43 133.25 0.99 18.67 16 7 C -0.35 -15.53 9.95 22.71 0.23 -15.30 16 8 C -0.03 -1.47 10.15 22.39 0.23 -1.24 16 9 C -0.33 -16.95 9.83 22.87 0.22 -16.73 16 10 C 0.24 13.95 6.55 40.19 0.26 14.21 16 11 C -0.46 -26.89 9.14 23.47 0.21 -26.68 16 12 H 0.09 4.69 7.85 -2.91 -0.02 4.66 16 13 C 0.01 0.63 5.50 85.29 0.47 1.10 16 14 N -0.69 -40.26 9.00 21.84 0.20 -40.06 16 15 Si 0.97 41.42 29.56 68.60 2.03 43.45 16 16 H -0.25 -10.26 7.11 99.48 0.71 -9.55 16 17 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 18 H -0.27 -10.93 7.11 99.48 0.71 -10.22 16 19 N -0.51 -29.84 5.74 -186.36 -1.07 -30.91 16 20 C 0.05 1.44 5.59 72.14 0.40 1.84 16 21 O -0.32 -12.30 9.95 -78.47 -0.78 -13.08 16 22 C 0.03 1.02 6.31 22.56 0.14 1.16 16 23 C -0.14 -4.29 9.96 22.37 0.22 -4.07 16 24 C -0.11 -2.61 10.04 22.26 0.22 -2.39 16 25 C -0.12 -2.46 10.04 22.26 0.22 -2.24 16 26 C -0.12 -2.84 9.96 22.37 0.22 -2.62 16 27 C 0.03 0.79 6.17 22.56 0.14 0.93 16 28 O -0.29 -8.46 9.24 -82.54 -0.76 -9.22 16 29 H 0.11 1.66 8.14 -2.39 -0.02 1.64 16 30 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 31 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 32 H 0.42 14.13 8.27 -92.71 -0.77 13.37 16 33 H 0.13 4.68 8.06 -2.91 -0.02 4.66 16 34 H 0.14 4.94 8.06 -2.91 -0.02 4.92 16 35 H 0.11 5.09 8.06 -2.91 -0.02 5.06 16 36 H 0.27 14.81 8.29 -92.70 -0.77 14.04 16 37 H 0.12 3.76 7.89 -2.39 -0.02 3.74 16 38 H 0.11 2.52 8.14 -2.38 -0.02 2.50 16 39 H 0.13 3.81 8.06 -2.91 -0.02 3.79 16 40 H 0.16 2.62 8.06 -2.91 -0.02 2.60 16 41 H 0.17 2.22 8.06 -2.91 -0.02 2.20 16 42 H 0.16 3.00 8.06 -2.91 -0.02 2.98 16 Total: -1.00 -79.34 355.46 3.59 -75.75 By element: Atomic # 1 Polarization: 38.99 SS G_CDS: 0.30 Total: 39.29 kcal Atomic # 6 Polarization: -19.02 SS G_CDS: 5.33 Total: -13.69 kcal Atomic # 7 Polarization: -97.16 SS G_CDS: -2.50 Total: -99.66 kcal Atomic # 8 Polarization: -43.57 SS G_CDS: -1.57 Total: -45.14 kcal Atomic # 14 Polarization: 41.42 SS G_CDS: 2.03 Total: 43.45 kcal Total: -79.34 3.59 -75.75 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001462446011.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.023 kcal (2) G-P(sol) polarization free energy of solvation -79.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.746 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds