Wall clock time and date at job start Sat Apr 11 2020 05:55:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31571 * 1 3 3 Si 1.86802 * 119.99866 * 2 1 4 4 H 1.48497 * 109.47226 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.46724 * 299.99674 * 3 2 1 6 6 H 1.48502 * 109.47256 * 59.99374 * 3 2 1 7 7 C 1.38631 * 120.00168 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00321 * 180.02562 * 7 2 1 9 9 O 1.34809 * 120.00105 * 0.02562 * 7 2 1 10 10 C 1.35772 * 117.00436 * 174.97750 * 9 7 2 11 11 C 1.38749 * 120.08419 * 5.19459 * 10 9 7 12 12 C 1.38342 * 119.97365 * 180.23453 * 11 10 9 13 13 F 1.35102 * 119.92382 * 179.79292 * 12 11 10 14 14 C 1.38540 * 120.15393 * 359.76614 * 12 11 10 15 15 C 1.38196 * 120.17433 * 359.97438 * 14 12 11 16 16 C 1.38691 * 120.02500 * 359.97438 * 15 14 12 17 17 N 1.40137 * 120.07975 * 180.02562 * 16 15 14 18 18 C 1.34777 * 119.99847 * 335.23341 * 17 16 15 19 19 O 1.21586 * 119.99819 * 354.32809 * 18 17 16 20 20 N 1.34771 * 119.99544 * 174.32993 * 18 17 16 21 21 C 1.46505 * 119.99747 * 180.02562 * 20 18 17 22 22 H 1.08998 * 109.52382 * 35.11992 * 21 20 18 23 23 C 1.53096 * 109.51874 * 274.99943 * 21 20 18 24 24 O 1.42908 * 109.41197 * 182.42348 * 23 21 20 25 25 C 1.42901 * 114.09992 * 61.15699 * 24 23 21 26 26 C 1.53091 * 109.42165 * 298.83760 * 25 24 23 27 27 C 1.53174 * 109.57698 * 155.28451 * 21 20 18 28 28 H 1.08996 * 109.54609 * 57.04695 * 27 21 20 29 29 O 1.42907 * 109.54025 * 296.78182 * 27 21 20 30 30 H 0.97004 * 120.00212 * 0.02562 * 1 2 3 31 31 H 1.08001 * 120.01079 * 0.02562 * 11 10 9 32 32 H 1.08001 * 119.91826 * 180.02562 * 14 12 11 33 33 H 1.08008 * 119.99106 * 180.02562 * 15 14 12 34 34 H 0.97000 * 119.99999 * 155.23198 * 17 16 15 35 35 H 0.97004 * 120.00421 * 0.02562 * 20 18 17 36 36 H 1.09001 * 109.48358 * 62.43984 * 23 21 20 37 37 H 1.09004 * 109.49182 * 302.40931 * 23 21 20 38 38 H 1.09002 * 109.48044 * 58.82322 * 25 24 23 39 39 H 1.08995 * 109.48185 * 178.84494 * 25 24 23 40 40 H 1.09010 * 109.51786 * 177.52034 * 26 25 24 41 41 H 1.09003 * 109.52382 * 297.70459 * 26 25 24 42 42 H 0.96695 * 113.99753 * 180.02562 * 29 27 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2497 1.6178 0.0000 4 1 3.7097 1.3465 0.0006 5 1 1.8909 2.3964 -1.2126 6 1 1.8908 2.3966 1.2124 7 6 2.0089 -1.2006 0.0005 8 1 3.0889 -1.2006 0.0010 9 8 1.3349 -2.3681 0.0005 10 6 2.0704 -3.5045 -0.1048 11 6 3.4563 -3.4391 -0.0978 12 6 4.2034 -4.5980 -0.2102 13 9 5.5529 -4.5328 -0.2074 14 6 3.5711 -5.8253 -0.3250 15 6 2.1910 -5.8982 -0.3273 16 6 1.4348 -4.7411 -0.2139 17 7 0.0354 -4.8137 -0.2156 18 6 -0.5847 -5.8557 -0.8040 19 8 0.0631 -6.6785 -1.4219 20 7 -1.9226 -5.9856 -0.7073 21 6 -2.5966 -7.1187 -1.3463 22 1 -1.9575 -8.0000 -1.2928 23 6 -2.8830 -6.7829 -2.8123 24 8 -3.5904 -7.8666 -3.4184 25 6 -4.8566 -8.1456 -2.8176 26 6 -4.6496 -8.5362 -1.3519 27 6 -3.9194 -7.4009 -0.6275 28 1 -4.5387 -6.5040 -0.6378 29 8 -3.6565 -7.7868 0.7232 30 1 -0.4850 0.8401 -0.0004 31 1 3.9516 -2.4836 -0.0080 32 1 4.1581 -6.7277 -0.4121 33 1 1.7011 -6.8566 -0.4165 34 1 -0.4871 -4.1139 0.2067 35 1 -2.4394 -5.3290 -0.2146 36 1 -1.9423 -6.6229 -3.3392 37 1 -3.4884 -5.8780 -2.8666 38 1 -5.4879 -7.2587 -2.8717 39 1 -5.3377 -8.9671 -3.3483 40 1 -5.6175 -8.7066 -0.8802 41 1 -4.0521 -9.4463 -1.2983 42 1 -4.4513 -7.9815 1.2383 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001476283087.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:55 Heat of formation + Delta-G solvation = -161.086130 kcal Electronic energy + Delta-G solvation = -29624.716944 eV Core-core repulsion = 25099.642972 eV Total energy + Delta-G solvation = -4525.073972 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.131 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -48.20137 -40.61840 -39.70824 -38.59869 -36.95901 -36.37794 -34.55149 -34.05596 -32.39202 -32.01052 -30.13297 -29.30477 -27.87359 -25.49591 -24.82702 -23.92852 -22.44573 -21.62468 -20.87009 -20.43516 -18.35641 -18.25699 -17.82476 -17.66486 -17.03572 -16.46432 -16.22814 -15.55202 -15.34657 -15.20727 -15.01511 -14.89954 -14.70717 -14.29075 -14.12221 -13.94897 -13.67887 -13.50843 -13.39472 -13.28466 -13.10975 -12.71099 -12.28869 -12.14574 -11.84803 -11.65249 -11.42854 -11.29336 -11.00931 -10.87062 -10.70954 -10.50891 -10.37040 -10.16311 -9.85781 -9.78293 -9.45924 -8.98029 -8.94787 -7.83541 -7.01232 -6.59585 -4.16716 1.88890 2.15684 2.74331 3.06106 3.08830 3.13965 3.41253 3.59011 3.75574 3.85674 4.25867 4.35180 4.40713 4.49087 4.59672 4.71713 4.86933 4.89458 4.99562 5.10512 5.15887 5.20468 5.26367 5.38930 5.56805 5.61467 5.72372 5.77899 5.85390 6.05538 6.22741 6.41236 6.63211 6.68456 6.90021 6.94319 6.98377 7.09603 7.16255 7.27475 7.30829 7.69867 7.85151 8.24585 8.81429 8.87371 9.48539 10.57922 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.011299 B = 0.003108 C = 0.002610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2477.410252 B = 9006.106523 C =10727.420454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.862 5.862 2 C 0.042 3.958 3 Si 0.942 3.058 4 H -0.265 1.265 5 H -0.275 1.275 6 H -0.275 1.275 7 C -0.390 4.390 8 H 0.095 0.905 9 O -0.173 6.173 10 C 0.154 3.846 11 C -0.256 4.256 12 C 0.123 3.877 13 F -0.152 7.152 14 C -0.223 4.223 15 C -0.062 4.062 16 C 0.085 3.915 17 N -0.662 5.662 18 C 0.706 3.294 19 O -0.582 6.582 20 N -0.732 5.732 21 C 0.143 3.857 22 H 0.104 0.896 23 C 0.052 3.948 24 O -0.374 6.374 25 C 0.058 3.942 26 C -0.185 4.185 27 C 0.096 3.904 28 H 0.063 0.937 29 O -0.554 6.554 30 H 0.270 0.730 31 H 0.143 0.857 32 H 0.122 0.878 33 H 0.150 0.850 34 H 0.413 0.587 35 H 0.400 0.600 36 H 0.110 0.890 37 H 0.056 0.944 38 H 0.054 0.946 39 H 0.099 0.901 40 H 0.081 0.919 41 H 0.085 0.915 42 H 0.378 0.622 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.334 -12.137 -0.583 16.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.496 5.496 2 C -0.162 4.162 3 Si 0.767 3.233 4 H -0.190 1.190 5 H -0.201 1.201 6 H -0.201 1.201 7 C -0.466 4.466 8 H 0.112 0.888 9 O -0.076 6.076 10 C 0.098 3.902 11 C -0.277 4.277 12 C 0.103 3.897 13 F -0.131 7.131 14 C -0.243 4.243 15 C -0.083 4.083 16 C -0.010 4.010 17 N -0.307 5.307 18 C 0.407 3.593 19 O -0.460 6.460 20 N -0.389 5.389 21 C 0.037 3.963 22 H 0.122 0.878 23 C -0.027 4.027 24 O -0.291 6.291 25 C -0.019 4.019 26 C -0.224 4.224 27 C 0.036 3.964 28 H 0.081 0.919 29 O -0.359 6.359 30 H 0.080 0.920 31 H 0.160 0.840 32 H 0.140 0.860 33 H 0.167 0.833 34 H 0.249 0.751 35 H 0.234 0.766 36 H 0.128 0.872 37 H 0.074 0.926 38 H 0.072 0.928 39 H 0.117 0.883 40 H 0.099 0.901 41 H 0.104 0.896 42 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -10.495 -12.686 -1.474 16.531 hybrid contribution -0.520 1.683 0.871 1.965 sum -11.015 -11.003 -0.603 15.581 Atomic orbital electron populations 1.70016 1.05920 1.27779 1.45930 1.25264 0.95903 0.98804 0.96254 0.85621 0.79311 0.80113 0.78303 1.18956 1.20072 1.20077 1.21382 0.91997 0.80370 1.52840 0.88794 1.83894 1.33917 1.11250 1.78543 1.18686 0.89480 0.86832 0.95179 1.20827 0.93345 0.98439 1.15068 1.17456 0.75933 0.94379 1.01915 1.91407 1.30165 1.97378 1.94162 1.20500 0.94624 0.95818 1.13396 1.20819 0.92182 0.97633 0.97682 1.16693 0.81162 0.91313 1.11881 1.42218 1.05342 1.24855 1.58334 1.15823 0.81559 0.82328 0.79596 1.90859 1.64187 1.44178 1.46768 1.44833 1.05876 1.29204 1.58954 1.21381 0.92687 0.90836 0.91443 0.87756 1.23113 0.98055 0.89071 0.92416 1.88023 1.31756 1.52802 1.56535 1.22594 0.86051 1.00973 0.92292 1.22971 1.01786 1.00383 0.97257 1.22113 0.95392 0.96127 0.82793 0.91932 1.86643 1.36324 1.90647 1.22304 0.91974 0.83974 0.85964 0.83305 0.75082 0.76619 0.87173 0.92557 0.92822 0.88296 0.90070 0.89642 0.77492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -23.42 13.67 55.48 0.76 -22.66 16 2 C 0.04 1.10 5.49 -17.52 -0.10 1.00 16 3 Si 0.94 19.74 29.55 -169.99 -5.02 14.72 16 4 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 5 H -0.28 -5.69 7.11 56.52 0.40 -5.29 16 6 H -0.28 -5.65 7.11 56.52 0.40 -5.25 16 7 C -0.39 -10.29 9.49 30.88 0.29 -10.00 16 8 H 0.09 2.35 5.20 -52.49 -0.27 2.07 16 9 O -0.17 -4.50 9.18 0.04 0.00 -4.50 16 10 C 0.15 3.58 6.66 -38.94 -0.26 3.32 16 11 C -0.26 -5.66 9.14 -39.35 -0.36 -6.02 16 12 C 0.12 2.51 7.29 -39.43 -0.29 2.22 16 13 F -0.15 -2.97 17.26 2.25 0.04 -2.93 16 14 C -0.22 -4.26 10.02 -39.49 -0.40 -4.66 16 15 C -0.06 -1.24 8.71 -39.43 -0.34 -1.59 16 16 C 0.08 1.79 6.45 -83.44 -0.54 1.25 16 17 N -0.66 -12.37 5.29 -14.07 -0.07 -12.45 16 18 C 0.71 12.35 8.33 -86.92 -0.72 11.63 16 19 O -0.58 -11.65 13.18 5.29 0.07 -11.58 16 20 N -0.73 -9.77 5.02 -58.54 -0.29 -10.06 16 21 C 0.14 1.71 2.33 -67.79 -0.16 1.55 16 22 H 0.10 1.51 7.58 -51.93 -0.39 1.12 16 23 C 0.05 0.60 6.42 37.21 0.24 0.84 16 24 O -0.37 -4.23 10.77 -35.23 -0.38 -4.61 16 25 C 0.06 0.43 6.84 37.20 0.25 0.69 16 26 C -0.19 -1.26 5.77 -26.58 -0.15 -1.42 16 27 C 0.10 0.82 3.06 -26.54 -0.08 0.74 16 28 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 29 O -0.55 -5.12 13.25 -35.23 -0.47 -5.59 16 30 H 0.27 6.78 8.31 -40.82 -0.34 6.44 16 31 H 0.14 3.14 5.63 -52.49 -0.30 2.84 16 32 H 0.12 2.03 8.06 -52.49 -0.42 1.60 16 33 H 0.15 2.93 5.79 -52.48 -0.30 2.62 16 34 H 0.41 7.41 8.37 -40.82 -0.34 7.07 16 35 H 0.40 4.54 8.63 -40.82 -0.35 4.19 16 36 H 0.11 1.51 8.14 -51.93 -0.42 1.09 16 37 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 39 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.08 0.35 8.14 -51.92 -0.42 -0.07 16 41 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.38 1.75 9.09 45.56 0.41 2.16 16 LS Contribution 358.15 15.07 5.40 5.40 Total: -1.00 -31.96 358.15 -6.65 -38.61 By element: Atomic # 1 Polarization: 20.18 SS G_CDS: -4.06 Total: 16.11 kcal Atomic # 6 Polarization: 2.16 SS G_CDS: -2.61 Total: -0.45 kcal Atomic # 7 Polarization: -45.57 SS G_CDS: 0.39 Total: -45.17 kcal Atomic # 8 Polarization: -25.51 SS G_CDS: -0.78 Total: -26.28 kcal Atomic # 9 Polarization: -2.97 SS G_CDS: 0.04 Total: -2.93 kcal Atomic # 14 Polarization: 19.74 SS G_CDS: -5.02 Total: 14.72 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -31.96 -6.65 -38.61 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001476283087.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -122.480 kcal (2) G-P(sol) polarization free energy of solvation -31.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.606 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds