Wall clock time and date at job start Sat Apr 11 2020 05:56:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31633 * 1 3 3 Si 1.86800 * 120.00036 * 2 1 4 4 H 1.48501 * 109.47055 * 0.02562 * 3 2 1 5 5 H 1.48508 * 109.47016 * 119.99774 * 3 2 1 6 6 H 1.48495 * 109.47483 * 240.00131 * 3 2 1 7 7 C 1.38798 * 120.00311 * 180.02562 * 2 1 3 8 8 H 1.07991 * 120.00434 * 180.02562 * 7 2 1 9 9 S 1.76199 * 119.99771 * 0.02562 * 7 2 1 10 10 C 1.80998 * 100.00013 * 180.02562 * 9 7 2 11 11 C 1.50708 * 109.47052 * 180.02562 * 10 9 7 12 12 O 1.21284 * 119.99748 * 359.97438 * 11 10 9 13 13 N 1.34775 * 119.99957 * 180.02562 * 11 10 9 14 14 C 1.47019 * 125.64724 * 0.02562 * 13 11 10 15 15 C 1.54323 * 107.27046 * 178.90656 * 14 13 11 16 16 C 1.55152 * 102.94507 * 337.80871 * 15 14 13 17 17 H 1.09003 * 111.00681 * 277.43236 * 16 15 14 18 18 C 1.52997 * 111.00939 * 153.61094 * 16 15 14 19 19 N 1.46896 * 109.47586 * 175.00009 * 18 16 15 20 20 C 1.46897 * 111.00151 * 179.97438 * 19 18 16 21 21 C 1.52999 * 109.47155 * 179.97438 * 20 19 18 22 22 C 1.52999 * 109.47298 * 180.02562 * 21 20 19 23 23 F 1.39900 * 109.47164 * 59.99812 * 22 21 20 24 24 F 1.39897 * 109.47446 * 180.02562 * 22 21 20 25 25 F 1.39902 * 109.47003 * 300.00339 * 22 21 20 26 26 C 1.47419 * 125.64747 * 179.71629 * 13 11 10 27 27 H 0.97001 * 119.99662 * 179.97438 * 1 2 3 28 28 H 1.09005 * 109.47183 * 299.99528 * 10 9 7 29 29 H 1.08991 * 109.47038 * 60.00359 * 10 9 7 30 30 H 1.08999 * 109.88880 * 298.32450 * 14 13 11 31 31 H 1.08999 * 109.88153 * 59.49017 * 14 13 11 32 32 H 1.09001 * 110.71918 * 96.17125 * 15 14 13 33 33 H 1.09008 * 110.72044 * 219.26662 * 15 14 13 34 34 H 1.09004 * 109.47274 * 295.00582 * 18 16 15 35 35 H 1.09002 * 109.46573 * 55.00079 * 18 16 15 36 36 H 1.00903 * 110.99405 * 56.04721 * 19 18 16 37 37 H 1.09000 * 109.47202 * 300.00444 * 20 19 18 38 38 H 1.09007 * 109.46829 * 60.00523 * 20 19 18 39 39 H 1.09000 * 109.47492 * 300.00345 * 21 20 19 40 40 H 1.09007 * 109.46760 * 60.00560 * 21 20 19 41 41 H 1.08999 * 110.36921 * 322.99701 * 26 13 11 42 42 H 1.08996 * 110.36854 * 85.32123 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 1.2853 2.7465 0.0006 5 1 3.1041 1.6964 1.2126 6 1 3.1041 1.6965 -1.2124 7 6 2.0104 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0001 9 16 1.1294 -2.7279 -0.0019 10 6 2.5160 -3.8913 -0.0013 11 6 1.9875 -5.3027 -0.0030 12 8 0.7911 -5.5022 -0.0040 13 7 2.8442 -6.3431 -0.0024 14 6 4.3111 -6.2450 0.0004 15 6 4.8665 -7.6846 0.0282 16 6 3.6835 -8.5023 0.6105 17 1 3.6666 -8.4441 1.6989 18 6 3.7401 -9.9580 0.1429 19 7 2.6788 -10.7271 0.8062 20 6 2.7022 -12.1326 0.3798 21 6 1.5856 -12.8999 1.0907 22 6 1.6103 -14.3639 0.6471 23 9 2.8470 -14.9298 0.9753 24 9 0.5889 -15.0654 1.2967 25 9 1.4174 -14.4353 -0.7367 26 6 2.4656 -7.7678 0.0021 27 1 -0.4850 -0.8401 -0.0004 28 1 3.1252 -3.7309 -0.8909 29 1 3.1238 -3.7317 0.8891 30 1 4.6503 -5.7342 -0.9008 31 1 4.6447 -5.7019 0.8846 32 1 5.1107 -8.0233 -0.9787 33 1 5.7397 -7.7486 0.6775 34 1 3.5975 -9.9985 -0.9370 35 1 4.7106 -10.3838 0.3974 36 1 1.7738 -10.3136 0.6382 37 1 2.5521 -12.1878 -0.6984 38 1 3.6655 -12.5739 0.6357 39 1 1.7361 -12.8446 2.1688 40 1 0.6220 -12.4587 0.8352 41 1 1.5810 -7.9234 0.6195 42 1 2.2853 -8.1156 -1.0151 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001491786100.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:07 Heat of formation + Delta-G solvation = -228.784984 kcal Electronic energy + Delta-G solvation = -26255.069248 eV Core-core repulsion = 21751.416070 eV Total energy + Delta-G solvation = -4503.653178 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.117 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -51.10519 -48.61693 -48.59023 -41.16959 -39.04185 -37.35668 -34.76166 -34.18013 -32.23274 -30.95468 -29.78072 -27.20710 -26.63781 -25.15288 -23.57178 -22.93337 -21.32515 -20.88047 -20.10881 -19.56223 -19.38056 -18.40621 -18.19041 -17.77591 -16.97480 -16.89114 -16.12425 -15.79956 -15.68010 -15.62539 -15.44247 -15.32597 -15.08376 -15.02861 -14.79297 -14.73980 -14.65082 -14.59199 -14.36216 -14.07148 -13.79784 -13.61833 -13.38959 -13.17798 -12.90578 -12.84360 -12.73986 -12.33549 -11.97380 -11.93856 -11.83825 -11.61316 -11.55888 -11.10481 -11.09259 -10.35001 -9.77395 -9.50576 -8.93816 -8.90133 -6.29699 1.13360 1.43891 1.51403 1.60578 1.76622 1.80799 1.99776 2.33248 2.67985 2.99678 3.01250 3.07094 3.08996 3.31128 3.48988 3.58070 3.78148 3.87727 3.93701 4.03417 4.10494 4.25097 4.29096 4.36334 4.41342 4.43170 4.58543 4.66246 4.75450 4.79385 4.83723 4.88846 4.95227 5.07778 5.26703 5.38179 5.62599 5.90270 6.13253 6.27433 6.30269 6.99517 7.05147 8.49523 Molecular weight = 340.12amu Principal moments of inertia in cm(-1) A = 0.030012 B = 0.001630 C = 0.001567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 932.743509 B =17176.161440 C =17861.798325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C -0.019 4.019 3 Si 1.137 2.863 4 H -0.280 1.280 5 H -0.262 1.262 6 H -0.262 1.262 7 C -0.614 4.614 8 H 0.076 0.924 9 S -0.196 6.196 10 C -0.100 4.100 11 C 0.543 3.457 12 O -0.568 6.568 13 N -0.616 5.616 14 C 0.087 3.913 15 C -0.111 4.111 16 C -0.086 4.086 17 H 0.092 0.908 18 C 0.077 3.923 19 N -0.694 5.694 20 C 0.058 3.942 21 C -0.160 4.160 22 C 0.454 3.546 23 F -0.189 7.189 24 F -0.192 7.192 25 F -0.192 7.192 26 C 0.103 3.897 27 H 0.260 0.740 28 H 0.107 0.893 29 H 0.108 0.892 30 H 0.077 0.923 31 H 0.076 0.924 32 H 0.093 0.907 33 H 0.110 0.890 34 H 0.043 0.957 35 H 0.096 0.904 36 H 0.345 0.655 37 H 0.045 0.955 38 H 0.089 0.911 39 H 0.127 0.873 40 H 0.119 0.881 41 H 0.062 0.938 42 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.144 -29.309 0.999 32.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.222 4.222 3 Si 0.954 3.046 4 H -0.205 1.205 5 H -0.187 1.187 6 H -0.187 1.187 7 C -0.761 4.761 8 H 0.094 0.906 9 S 0.031 5.969 10 C -0.251 4.251 11 C 0.331 3.669 12 O -0.447 6.447 13 N -0.350 5.350 14 C -0.035 4.035 15 C -0.149 4.149 16 C -0.106 4.106 17 H 0.110 0.890 18 C -0.052 4.052 19 N -0.326 5.326 20 C -0.071 4.071 21 C -0.198 4.198 22 C 0.400 3.600 23 F -0.170 7.170 24 F -0.173 7.173 25 F -0.174 7.174 26 C -0.019 4.019 27 H 0.071 0.929 28 H 0.126 0.874 29 H 0.126 0.874 30 H 0.096 0.904 31 H 0.095 0.905 32 H 0.112 0.888 33 H 0.129 0.871 34 H 0.061 0.939 35 H 0.115 0.885 36 H 0.164 0.836 37 H 0.063 0.937 38 H 0.108 0.892 39 H 0.146 0.854 40 H 0.138 0.862 41 H 0.081 0.919 42 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 12.522 -28.099 1.544 30.801 hybrid contribution 0.542 -1.494 -0.990 1.872 sum 13.064 -29.593 0.554 32.353 Atomic orbital electron populations 1.70922 1.08016 1.29972 1.45822 1.27872 0.96319 1.06410 0.91629 0.82718 0.73949 0.69406 0.78495 1.20514 1.18715 1.18717 1.24022 0.96508 0.92659 1.62930 0.90627 1.85060 1.13172 1.01215 1.97465 1.23154 1.01996 0.93422 1.06557 1.19718 0.85537 0.86003 0.75634 1.90684 1.17021 1.85769 1.51239 1.48433 1.08027 1.05766 1.72808 1.22411 0.77732 1.00427 1.02954 1.22672 0.97866 0.90759 1.03634 1.22288 0.93207 0.93804 1.01291 0.88982 1.21886 0.96303 0.90792 0.96227 1.60434 1.08779 1.01649 1.61716 1.21856 0.98733 0.89083 0.97451 1.22835 1.04182 0.87007 1.05800 1.20777 0.72982 0.91678 0.74587 1.93181 1.43901 1.87636 1.92329 1.93188 1.60628 1.82070 1.81438 1.93181 1.94917 1.97156 1.32134 1.22440 0.99220 0.79281 1.00957 0.92908 0.87448 0.87423 0.90444 0.90547 0.88847 0.87117 0.93898 0.88524 0.83634 0.93670 0.89235 0.85431 0.86240 0.91940 0.91356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -58.19 13.67 21.65 0.30 -57.89 16 2 C -0.02 -1.12 5.49 84.86 0.47 -0.65 16 3 Si 1.14 49.07 29.92 68.60 2.05 51.12 16 4 H -0.28 -12.10 7.11 99.48 0.71 -11.40 16 5 H -0.26 -10.30 7.11 99.48 0.71 -9.59 16 6 H -0.26 -10.30 7.11 99.48 0.71 -9.59 16 7 C -0.61 -35.55 9.50 67.95 0.65 -34.90 16 8 H 0.08 4.09 7.80 -2.92 -0.02 4.06 16 9 S -0.20 -10.94 19.60 -56.49 -1.11 -12.05 16 10 C -0.10 -4.08 5.35 71.24 0.38 -3.70 16 11 C 0.54 20.85 7.87 87.66 0.69 21.54 16 12 O -0.57 -26.99 16.12 -3.04 -0.05 -27.04 16 13 N -0.62 -16.33 3.33 -812.25 -2.70 -19.04 16 14 C 0.09 1.49 6.49 86.73 0.56 2.05 16 15 C -0.11 -1.05 6.42 31.78 0.20 -0.84 16 16 C -0.09 -1.03 3.23 -9.48 -0.03 -1.06 16 17 H 0.09 1.25 8.14 -2.39 -0.02 1.24 16 18 C 0.08 0.65 5.19 86.30 0.45 1.10 16 19 N -0.69 -6.61 6.50 -513.89 -3.34 -9.95 16 20 C 0.06 0.46 5.44 86.30 0.47 0.93 16 21 C -0.16 -1.16 5.52 30.59 0.17 -0.99 16 22 C 0.45 5.20 3.16 71.98 0.23 5.43 16 23 F -0.19 -2.49 16.80 44.97 0.76 -1.73 16 24 F -0.19 -2.72 17.32 44.97 0.78 -1.94 16 25 F -0.19 -2.67 16.80 44.97 0.76 -1.92 16 26 C 0.10 2.10 5.85 86.78 0.51 2.61 16 27 H 0.26 17.28 7.12 -92.71 -0.66 16.62 16 28 H 0.11 4.00 8.14 -2.39 -0.02 3.98 16 29 H 0.11 4.02 8.14 -2.40 -0.02 4.00 16 30 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 31 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 32 H 0.09 0.66 8.04 -2.39 -0.02 0.64 16 33 H 0.11 0.60 8.14 -2.38 -0.02 0.58 16 34 H 0.04 0.35 7.97 -2.39 -0.02 0.33 16 35 H 0.10 0.59 8.14 -2.39 -0.02 0.57 16 36 H 0.35 3.50 8.23 -89.69 -0.74 2.77 16 37 H 0.05 0.37 7.80 -2.39 -0.02 0.35 16 38 H 0.09 0.68 7.80 -2.38 -0.02 0.66 16 39 H 0.13 0.77 8.14 -2.39 -0.02 0.75 16 40 H 0.12 0.67 8.14 -2.38 -0.02 0.65 16 41 H 0.06 1.49 8.04 -2.39 -0.02 1.48 16 42 H 0.07 1.32 7.90 -2.39 -0.02 1.30 16 Total: -1.00 -79.62 374.85 2.59 -77.03 By element: Atomic # 1 Polarization: 11.48 SS G_CDS: 0.41 Total: 11.89 kcal Atomic # 6 Polarization: -13.23 SS G_CDS: 4.74 Total: -8.49 kcal Atomic # 7 Polarization: -81.13 SS G_CDS: -5.75 Total: -86.88 kcal Atomic # 8 Polarization: -26.99 SS G_CDS: -0.05 Total: -27.04 kcal Atomic # 9 Polarization: -7.87 SS G_CDS: 2.29 Total: -5.58 kcal Atomic # 14 Polarization: 49.07 SS G_CDS: 2.05 Total: 51.12 kcal Atomic # 16 Polarization: -10.94 SS G_CDS: -1.11 Total: -12.05 kcal Total: -79.62 2.59 -77.03 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001491786100.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -151.756 kcal (2) G-P(sol) polarization free energy of solvation -79.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -231.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.029 kcal (6) G-S(sol) free energy of system = (1) + (5) -228.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds