Wall clock time and date at job start Sat Apr 11 2020 05:56:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31418 * 1 3 3 Si 1.86799 * 119.99853 * 2 1 4 4 H 1.48491 * 109.47130 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47359 * 300.00358 * 3 2 1 6 6 H 1.48506 * 109.47042 * 60.00147 * 3 2 1 7 7 C 1.38931 * 120.00101 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99905 * 184.78359 * 7 2 1 9 9 N 1.36975 * 119.99894 * 4.78147 * 7 2 1 10 10 C 1.34779 * 120.00208 * 126.34393 * 9 7 2 11 11 O 1.21644 * 120.00058 * 183.40199 * 10 9 7 12 12 C 1.47155 * 119.99501 * 3.39629 * 10 9 7 13 13 C 1.36707 * 127.54841 * 352.33858 * 12 10 9 14 14 O 1.34109 * 108.86839 * 179.97438 * 13 12 10 15 15 C 1.33398 * 111.30919 * 359.50067 * 14 13 12 16 16 C 1.36161 * 108.06834 * 0.91522 * 15 14 13 17 17 C 1.47709 * 122.21404 * 178.94645 * 16 15 14 18 18 O 1.21619 * 122.32805 * 223.65651 * 17 16 15 19 19 N 1.35748 * 115.34100 * 43.68084 * 17 16 15 20 20 C 1.45336 * 119.18273 * 14.06683 * 19 17 16 21 21 C 1.52911 * 113.82709 * 273.94455 * 20 19 17 22 22 C 1.50521 * 128.58504 * 181.00502 * 15 14 13 23 23 C 1.39704 * 120.00353 * 306.33871 * 9 7 2 24 24 C 1.38985 * 120.08046 * 114.39665 * 23 9 7 25 25 C 1.38074 * 119.91759 * 179.81995 * 24 23 9 26 26 C 1.38315 * 120.08159 * 0.43668 * 25 24 23 27 27 C 1.38312 * 120.15807 * 359.79720 * 26 25 24 28 28 C 1.38068 * 120.08397 * 359.97438 * 27 26 25 29 29 H 0.96992 * 120.00123 * 5.00421 * 1 2 3 30 30 H 1.07997 * 125.56194 * 359.95405 * 13 12 10 31 31 H 0.96995 * 120.40810 * 194.04520 * 19 17 16 32 32 H 1.08991 * 108.61673 * 152.82167 * 20 19 17 33 33 H 1.09001 * 108.50018 * 34.98289 * 20 19 17 34 34 H 1.08997 * 109.46282 * 284.34144 * 21 20 19 35 35 H 1.08994 * 109.46519 * 164.34711 * 21 20 19 36 36 H 1.08995 * 109.45555 * 349.16517 * 22 15 14 37 37 H 1.08998 * 109.45492 * 229.20127 * 22 15 14 38 38 H 1.07994 * 120.03816 * 0.02562 * 24 23 9 39 39 H 1.07998 * 119.96042 * 180.21279 * 25 24 23 40 40 H 1.07998 * 119.91920 * 179.77143 * 26 25 24 41 41 H 1.08003 * 119.95963 * 179.97438 * 27 26 25 42 42 H 1.08006 * 120.04617 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.7081 1.3465 -0.0006 5 1 1.8893 2.3965 -1.2124 6 1 1.8894 2.3964 1.2126 7 6 2.0089 -1.2032 -0.0005 8 1 3.0860 -1.2048 0.0775 9 7 1.3276 -2.3873 -0.0999 10 6 1.6582 -3.2768 -1.0570 11 8 1.0136 -4.3004 -1.1849 12 6 2.7990 -3.0094 -1.9474 13 6 3.5330 -1.8598 -2.0386 14 8 4.4833 -2.0248 -2.9705 15 6 4.4293 -3.2448 -3.5072 16 6 3.3943 -3.9149 -2.9294 17 6 3.0383 -5.2961 -3.3133 18 8 1.8865 -5.6472 -3.4842 19 7 4.0861 -6.1463 -3.4618 20 6 5.3906 -5.7592 -2.9511 21 6 6.2134 -4.9211 -3.9303 22 6 5.3176 -3.8460 -4.5632 23 6 0.2900 -2.6732 0.7908 24 6 -1.0156 -2.7837 0.3271 25 6 -2.0380 -3.0700 1.2098 26 6 -1.7655 -3.2379 2.5554 27 6 -0.4681 -3.1239 3.0211 28 6 0.5600 -2.8424 2.1436 29 1 -0.4850 0.8368 -0.0733 30 1 3.3735 -0.9648 -1.4557 31 1 3.9656 -7.0017 -3.9029 32 1 5.9515 -6.6620 -2.7094 33 1 5.2472 -5.1843 -2.0362 34 1 6.6148 -5.5659 -4.7121 35 1 7.0346 -4.4420 -3.3973 36 1 5.9405 -3.0659 -5.0008 37 1 4.7021 -4.2981 -5.3410 38 1 -1.2296 -2.6490 -0.7228 39 1 -3.0522 -3.1594 0.8497 40 1 -2.5677 -3.4582 3.2441 41 1 -0.2590 -3.2552 4.0726 42 1 1.5728 -2.7531 2.5081 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001527411016.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:14 Heat of formation + Delta-G solvation = -6.285465 kcal Electronic energy + Delta-G solvation = -30068.779867 eV Core-core repulsion = 25981.187781 eV Total energy + Delta-G solvation = -4087.592086 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.126 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.30827 -39.24128 -39.08980 -37.17821 -36.31084 -34.79596 -32.62251 -32.25507 -31.87622 -29.92207 -29.89367 -28.45397 -26.05022 -25.35711 -23.89180 -22.88410 -21.66109 -21.48121 -20.66901 -19.34460 -19.03443 -17.81526 -17.00837 -16.37882 -16.27762 -15.99067 -15.56602 -15.14536 -14.98532 -14.91305 -14.41968 -14.22822 -14.02887 -13.74184 -13.42060 -13.08270 -12.92108 -12.85496 -12.66650 -12.41525 -12.28024 -11.81021 -11.71515 -11.62114 -11.43023 -11.22425 -11.11098 -10.99371 -10.65816 -10.43353 -10.19821 -9.66571 -9.21543 -9.17878 -8.91269 -8.74725 -8.09986 -8.02537 -7.90325 -7.31890 -6.50355 -4.50422 1.79144 2.13941 2.43748 2.48912 2.98794 3.04888 3.07897 3.11594 3.23971 3.62725 3.85962 4.37688 4.43766 4.67272 4.70632 4.73189 4.81216 4.96796 5.09976 5.16772 5.43705 5.46183 5.53850 5.57510 5.76794 5.77554 5.84007 5.88224 5.98195 6.06725 6.21628 6.42605 6.45956 6.56303 6.74178 6.83256 7.00940 7.12369 7.14328 7.31474 7.34179 7.44475 7.47663 7.65859 7.79189 7.99717 8.35021 8.58839 8.81302 9.27642 9.77543 10.45315 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.011987 B = 0.004773 C = 0.003717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2335.320032 B = 5864.544065 C = 7530.142065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.832 5.832 2 C 0.061 3.939 3 Si 0.905 3.095 4 H -0.261 1.261 5 H -0.273 1.273 6 H -0.274 1.274 7 C -0.372 4.372 8 H 0.096 0.904 9 N -0.411 5.411 10 C 0.552 3.448 11 O -0.556 6.556 12 C -0.158 4.158 13 C 0.015 3.985 14 O -0.173 6.173 15 C 0.005 3.995 16 C -0.197 4.197 17 C 0.594 3.406 18 O -0.492 6.492 19 N -0.737 5.737 20 C 0.109 3.891 21 C -0.134 4.134 22 C -0.036 4.036 23 C 0.214 3.786 24 C -0.072 4.072 25 C -0.123 4.123 26 C -0.151 4.151 27 C -0.125 4.125 28 C -0.131 4.131 29 H 0.275 0.725 30 H 0.249 0.751 31 H 0.399 0.601 32 H 0.079 0.921 33 H 0.075 0.925 34 H 0.078 0.922 35 H 0.082 0.918 36 H 0.086 0.914 37 H 0.090 0.910 38 H 0.110 0.890 39 H 0.108 0.892 40 H 0.106 0.894 41 H 0.108 0.892 42 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.622 -3.901 -3.932 12.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.463 5.463 2 C -0.151 4.151 3 Si 0.729 3.271 4 H -0.185 1.185 5 H -0.199 1.199 6 H -0.200 1.200 7 C -0.498 4.498 8 H 0.113 0.887 9 N -0.128 5.128 10 C 0.343 3.657 11 O -0.437 6.437 12 C -0.162 4.162 13 C -0.053 4.053 14 O -0.068 6.068 15 C -0.047 4.047 16 C -0.202 4.202 17 C 0.380 3.620 18 O -0.364 6.364 19 N -0.393 5.393 20 C -0.017 4.017 21 C -0.172 4.172 22 C -0.073 4.073 23 C 0.123 3.877 24 C -0.091 4.091 25 C -0.141 4.141 26 C -0.169 4.169 27 C -0.143 4.143 28 C -0.151 4.151 29 H 0.086 0.914 30 H 0.264 0.736 31 H 0.235 0.765 32 H 0.097 0.903 33 H 0.093 0.907 34 H 0.096 0.904 35 H 0.100 0.900 36 H 0.104 0.896 37 H 0.108 0.892 38 H 0.129 0.871 39 H 0.126 0.874 40 H 0.124 0.876 41 H 0.126 0.874 42 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 10.688 -4.085 -4.010 12.124 hybrid contribution 0.131 0.840 0.014 0.850 sum 10.819 -3.245 -3.996 11.981 Atomic orbital electron populations 1.69884 1.06120 1.28550 1.41749 1.25724 0.95541 0.99853 0.93955 0.86227 0.80083 0.81997 0.78760 1.18496 1.19858 1.19978 1.19400 0.91694 0.81985 1.56698 0.88730 1.40699 1.30532 1.16481 1.25061 1.17552 0.83767 0.84576 0.79854 1.90779 1.53967 1.28193 1.70807 1.20743 1.00458 0.93717 1.01324 1.26993 0.86999 1.01532 0.89744 1.83632 1.48263 1.30975 1.43936 1.22385 0.98078 0.84436 0.99815 1.20917 0.99495 0.96707 1.03084 1.17765 0.84158 0.84053 0.75983 1.90867 1.19058 1.78436 1.48048 1.45706 1.08936 1.21215 1.63407 1.21103 0.83735 0.99785 0.97037 1.22234 0.98210 0.96855 0.99945 1.20143 0.96301 0.97404 0.93489 1.17568 0.88165 0.93000 0.88951 1.20928 0.91658 0.97158 0.99387 1.20796 0.98191 1.01697 0.93457 1.20788 0.96175 1.04554 0.95386 1.20699 0.92986 1.02363 0.98294 1.21004 0.98777 1.02187 0.93101 0.91395 0.73569 0.76523 0.90305 0.90677 0.90385 0.89956 0.89555 0.89167 0.87146 0.87395 0.87607 0.87389 0.87007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -21.20 11.66 55.49 0.65 -20.55 16 2 C 0.06 1.44 5.42 -17.47 -0.09 1.35 16 3 Si 0.90 17.63 29.18 -169.99 -4.96 12.67 16 4 H -0.26 -4.72 7.11 56.52 0.40 -4.32 16 5 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 6 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 7 C -0.37 -8.80 6.22 -15.00 -0.09 -8.89 16 8 H 0.10 2.06 5.87 -52.49 -0.31 1.75 16 9 N -0.41 -10.43 2.54 -60.19 -0.15 -10.58 16 10 C 0.55 14.40 7.50 -12.64 -0.09 14.30 16 11 O -0.56 -16.15 15.21 -6.05 -0.09 -16.24 16 12 C -0.16 -3.54 6.21 -103.62 -0.64 -4.18 16 13 C 0.01 0.28 10.41 30.18 0.31 0.59 16 14 O -0.17 -2.91 10.48 8.57 0.09 -2.82 16 15 C 0.00 0.07 6.35 -35.14 -0.22 -0.15 16 16 C -0.20 -3.87 4.99 -103.56 -0.52 -4.39 16 17 C 0.59 11.62 7.34 -11.95 -0.09 11.53 16 18 O -0.49 -11.98 16.99 -6.03 -0.10 -12.08 16 19 N -0.74 -9.94 5.26 -61.87 -0.33 -10.26 16 20 C 0.11 1.13 6.00 -4.71 -0.03 1.10 16 21 C -0.13 -1.07 6.32 -26.47 -0.17 -1.24 16 22 C -0.04 -0.38 5.65 -27.66 -0.16 -0.54 16 23 C 0.21 5.39 3.58 -83.72 -0.30 5.09 16 24 C -0.07 -1.77 8.43 -39.36 -0.33 -2.11 16 25 C -0.12 -2.61 10.04 -39.61 -0.40 -3.01 16 26 C -0.15 -2.93 10.04 -39.53 -0.40 -3.33 16 27 C -0.12 -2.48 10.04 -39.62 -0.40 -2.88 16 28 C -0.13 -2.97 9.77 -39.37 -0.38 -3.36 16 29 H 0.28 6.65 8.32 -40.82 -0.34 6.31 16 30 H 0.25 4.66 4.38 -52.49 -0.23 4.43 16 31 H 0.40 4.45 8.95 -40.82 -0.37 4.08 16 32 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.07 0.96 6.93 -51.93 -0.36 0.60 16 34 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.09 0.95 8.04 -51.93 -0.42 0.53 16 38 H 0.11 2.92 8.06 -52.49 -0.42 2.49 16 39 H 0.11 2.00 8.06 -52.49 -0.42 1.57 16 40 H 0.11 1.70 8.06 -52.49 -0.42 1.28 16 41 H 0.11 1.78 8.06 -52.48 -0.42 1.36 16 42 H 0.11 2.41 8.06 -52.48 -0.42 1.98 16 LS Contribution 352.30 15.07 5.31 5.31 Total: -1.00 -33.78 352.30 -8.21 -41.98 By element: Atomic # 1 Polarization: 17.29 SS G_CDS: -4.62 Total: 12.67 kcal Atomic # 6 Polarization: 3.90 SS G_CDS: -4.00 Total: -0.10 kcal Atomic # 7 Polarization: -41.57 SS G_CDS: 0.17 Total: -41.40 kcal Atomic # 8 Polarization: -31.03 SS G_CDS: -0.10 Total: -31.14 kcal Atomic # 14 Polarization: 17.63 SS G_CDS: -4.96 Total: 12.67 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -33.78 -8.21 -41.98 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001527411016.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.699 kcal (2) G-P(sol) polarization free energy of solvation -33.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.984 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds