Wall clock time and date at job start Sat Apr 11 2020 05:56:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 O 1.42903 * 109.47100 * 70.68897 * 3 2 1 5 5 C 1.35892 * 116.99648 * 179.97438 * 4 3 2 6 6 C 1.38789 * 120.03115 * 0.02562 * 5 4 3 7 7 C 1.38159 * 120.05520 * 179.97438 * 6 5 4 8 8 C 1.38189 * 120.11062 * 359.78730 * 7 6 5 9 9 C 1.38755 * 120.05446 * 0.46613 * 8 7 6 10 10 O 1.35911 * 120.02427 * 179.79415 * 9 8 7 11 11 C 1.34777 * 116.99645 * 256.78930 * 10 9 8 12 12 O 1.21526 * 120.00217 * 355.10431 * 11 10 9 13 13 C 1.47284 * 119.99800 * 174.82253 * 11 10 9 14 14 C 1.41341 * 126.42696 * 359.69093 * 13 11 10 15 15 N 1.30433 * 108.01212 * 179.81827 * 14 13 11 16 16 N 1.39928 * 108.91906 * 0.44532 * 15 14 13 17 17 C 1.46510 * 125.74171 * 179.74813 * 16 15 14 18 18 C 1.50696 * 109.47114 * 269.95820 * 17 16 15 19 19 H 1.08007 * 120.00144 * 0.02562 * 18 17 16 20 20 C 1.37876 * 120.00194 * 180.02562 * 18 17 16 21 21 N 1.31515 * 119.99838 * 359.97438 * 20 18 17 22 22 Si 1.86791 * 120.00144 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47329 * 359.97438 * 22 20 18 24 24 H 1.48503 * 109.47147 * 120.00080 * 22 20 18 25 25 H 1.48504 * 109.47465 * 239.99593 * 22 20 18 26 26 C 1.34226 * 108.51361 * 359.71239 * 16 15 14 27 27 C 1.50697 * 126.29591 * 179.97438 * 26 16 15 28 28 C 1.38614 * 120.02380 * 180.02562 * 5 4 3 29 29 H 4.38451 * 5.44518 * 180.02562 * 4 1 2 30 30 H 1.08997 * 109.47012 * 310.68762 * 3 2 1 31 31 H 1.09005 * 109.46934 * 190.68386 * 3 2 1 32 32 H 1.07997 * 119.97235 * 359.97438 * 6 5 4 33 33 H 1.08003 * 119.94347 * 180.02562 * 7 6 5 34 34 H 1.08007 * 119.96951 * 180.23547 * 8 7 6 35 35 H 1.07998 * 125.99718 * 0.02562 * 14 13 11 36 36 H 1.08999 * 109.46799 * 29.95920 * 17 16 15 37 37 H 1.09002 * 109.46722 * 149.96339 * 17 16 15 38 38 H 0.97001 * 120.00376 * 179.97438 * 21 20 18 39 39 H 1.09006 * 109.47294 * 270.00567 * 27 26 16 40 40 H 1.09002 * 109.47291 * 30.00218 * 27 26 16 41 41 H 1.08994 * 109.47404 * 150.00385 * 27 26 16 42 42 H 1.08004 * 120.05969 * 0.04579 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 8 3.1225 -0.4447 -1.2715 5 6 4.4698 -0.5024 -1.4396 6 6 5.3156 -0.1382 -0.4013 7 6 6.6854 -0.1972 -0.5715 8 6 7.2168 -0.6230 -1.7740 9 6 6.3755 -0.9832 -2.8169 10 8 6.8989 -1.3979 -4.0007 11 6 6.8856 -0.5145 -5.0184 12 8 6.3403 0.5629 -4.8809 13 6 7.5372 -0.8523 -6.2953 14 6 8.2172 -2.0537 -6.5985 15 7 8.6496 -1.9737 -7.8265 16 7 8.2817 -0.7322 -8.3569 17 6 8.5851 -0.2552 -9.7086 18 6 9.9054 0.4711 -9.7005 19 1 10.4631 0.5674 -8.7806 20 6 10.4015 1.0126 -10.8674 21 7 9.7227 0.8948 -11.9876 22 14 12.0385 1.9123 -10.8575 23 1 12.5987 1.9056 -9.4823 24 1 12.9826 1.2324 -11.7804 25 1 11.8354 3.3146 -11.3019 26 6 7.6036 -0.0521 -7.4192 27 6 7.0221 1.3305 -7.5656 28 6 5.0004 -0.9251 -2.6484 29 1 -1.0500 0.0001 -0.0002 30 1 3.0096 -0.6691 0.7792 31 1 3.0089 1.0107 0.1905 32 1 4.9027 0.1916 0.5405 33 1 7.3419 0.0862 0.2379 34 1 8.2880 -0.6719 -1.9033 35 1 8.3521 -2.8924 -5.9316 36 1 8.6417 -1.1046 -10.3893 37 1 7.7990 0.4237 -10.0392 38 1 10.0715 1.2761 -12.8085 39 1 7.7619 2.0701 -7.2592 40 1 6.7476 1.5009 -8.6066 41 1 6.1364 1.4206 -6.9368 42 1 4.3439 -1.2083 -3.4579 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001528715457.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:15 Heat of formation + Delta-G solvation = 26.788594 kcal Electronic energy + Delta-G solvation = -27369.782802 eV Core-core repulsion = 23283.624915 eV Total energy + Delta-G solvation = -4086.157887 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.126 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.64185 -41.93086 -40.86411 -38.66640 -37.36500 -35.85113 -34.42812 -33.94170 -32.94629 -31.82003 -30.87677 -29.38786 -28.49584 -28.34618 -25.77308 -24.77091 -23.74184 -23.04004 -21.82107 -20.59420 -19.71936 -19.49412 -18.89705 -18.63307 -17.70880 -17.57890 -17.15560 -17.10008 -16.93456 -16.54969 -16.21177 -15.91305 -15.38039 -15.00830 -14.89670 -14.62712 -14.35333 -14.21565 -14.04373 -13.87027 -13.75396 -13.62637 -13.17961 -13.07547 -13.00570 -12.71982 -12.66020 -12.55079 -12.34391 -11.95585 -11.88674 -11.85087 -11.62789 -11.41482 -11.16289 -10.76828 -10.36591 -9.94902 -9.73073 -9.32714 -8.39059 -6.55084 -0.05710 0.31766 0.33412 1.12031 1.19740 1.36882 1.38738 1.44014 1.53040 1.74854 1.88981 2.12846 2.32379 2.59047 2.72693 2.93963 3.39637 3.61390 3.67530 3.75383 3.87040 4.01401 4.06309 4.11133 4.14003 4.29727 4.33313 4.45042 4.48384 4.56002 4.67405 4.77496 4.88791 4.93258 4.99372 5.08175 5.12712 5.22934 5.30797 5.39907 5.48057 5.54998 5.68368 5.72443 5.92924 6.28136 6.51629 6.52920 6.68300 6.85553 7.16159 8.69329 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.020964 B = 0.002016 C = 0.001970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1335.283404 B =13887.136896 C =14207.598776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.248 4.248 3 C 0.165 3.835 4 O -0.332 6.332 5 C 0.135 3.865 6 C -0.197 4.197 7 C -0.056 4.056 8 C -0.162 4.162 9 C 0.104 3.896 10 O -0.289 6.289 11 C 0.557 3.443 12 O -0.525 6.525 13 C -0.321 4.321 14 C 0.099 3.901 15 N -0.331 5.331 16 N -0.331 5.331 17 C 0.264 3.736 18 C -0.556 4.556 19 H 0.054 0.946 20 C 0.025 3.975 21 N -0.916 5.916 22 Si 0.972 3.028 23 H -0.272 1.272 24 H -0.274 1.274 25 H -0.269 1.269 26 C 0.166 3.834 27 C -0.092 4.092 28 C -0.175 4.175 29 H 0.255 0.745 30 H 0.112 0.888 31 H 0.107 0.893 32 H 0.171 0.829 33 H 0.175 0.825 34 H 0.145 0.855 35 H 0.226 0.774 36 H 0.036 0.964 37 H 0.057 0.943 38 H 0.275 0.725 39 H 0.092 0.908 40 H 0.080 0.920 41 H 0.102 0.898 42 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.975 -0.836 26.638 29.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.248 4.248 3 C 0.092 3.908 4 O -0.246 6.246 5 C 0.090 3.910 6 C -0.216 4.216 7 C -0.074 4.074 8 C -0.180 4.180 9 C 0.062 3.938 10 O -0.204 6.204 11 C 0.405 3.595 12 O -0.414 6.414 13 C -0.334 4.334 14 C -0.088 4.088 15 N -0.150 5.150 16 N -0.107 5.107 17 C 0.146 3.854 18 C -0.594 4.594 19 H 0.072 0.928 20 C -0.177 4.177 21 N -0.553 5.553 22 Si 0.796 3.204 23 H -0.196 1.196 24 H -0.200 1.200 25 H -0.194 1.194 26 C 0.029 3.971 27 C -0.150 4.150 28 C -0.194 4.194 29 H 0.272 0.728 30 H 0.130 0.870 31 H 0.125 0.875 32 H 0.188 0.812 33 H 0.192 0.808 34 H 0.163 0.837 35 H 0.242 0.758 36 H 0.054 0.946 37 H 0.074 0.926 38 H 0.084 0.916 39 H 0.110 0.890 40 H 0.098 0.902 41 H 0.120 0.880 42 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -11.622 -1.105 25.223 27.793 hybrid contribution 0.118 0.600 -0.036 0.612 sum -11.504 -0.505 25.186 27.694 Atomic orbital electron populations 1.25938 0.96871 0.98374 0.94990 1.22827 0.94600 1.02891 1.04475 1.19624 0.84839 1.02273 0.84082 1.86081 1.19226 1.82441 1.36899 1.18651 0.82351 0.96161 0.93828 1.21721 0.94245 1.05938 0.99661 1.21247 0.94843 0.94699 0.96594 1.21423 1.00930 1.01831 0.93822 1.18435 0.91020 0.99651 0.84661 1.84623 1.74441 1.42803 1.18548 1.20154 0.75804 0.81052 0.82480 1.90786 1.44052 1.24213 1.82393 1.18886 1.20627 1.00031 0.93841 1.24578 0.93381 0.97833 0.93005 1.77191 1.24381 1.01249 1.12175 1.49208 1.37385 1.10861 1.13217 1.19504 0.97429 0.95028 0.73419 1.21410 1.05257 1.36980 0.95750 0.92811 1.25713 1.01370 0.96257 0.94341 1.69996 1.40088 1.45102 1.00159 0.85290 0.78413 0.78400 0.78298 1.19649 1.19961 1.19372 1.21921 0.91384 0.95774 0.88058 1.20669 1.02035 0.88191 1.04073 1.20504 0.94290 1.06700 0.97954 0.72847 0.87015 0.87536 0.81192 0.80806 0.83686 0.75803 0.94635 0.92565 0.91624 0.88980 0.90150 0.87972 0.86294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.80 19.25 74.32 1.43 -0.37 16 2 C -0.25 -3.97 13.73 31.13 0.43 -3.55 16 3 C 0.16 2.23 5.21 70.18 0.37 2.60 16 4 O -0.33 -7.27 10.09 -92.34 -0.93 -8.20 16 5 C 0.14 2.97 6.68 22.49 0.15 3.13 16 6 C -0.20 -2.93 9.04 22.38 0.20 -2.73 16 7 C -0.06 -0.82 10.04 22.24 0.22 -0.60 16 8 C -0.16 -3.41 9.98 22.38 0.22 -3.18 16 9 C 0.10 2.85 5.14 22.49 0.12 2.96 16 10 O -0.29 -8.87 9.87 -0.44 0.00 -8.87 16 11 C 0.56 19.46 7.83 70.20 0.55 20.01 16 12 O -0.53 -19.91 14.38 19.75 0.28 -19.63 16 13 C -0.32 -11.95 6.13 -20.16 -0.12 -12.08 16 14 C 0.10 3.54 11.87 85.66 1.02 4.55 16 15 N -0.33 -14.40 12.50 -56.25 -0.70 -15.10 16 16 N -0.33 -15.11 3.56 -336.64 -1.20 -16.31 16 17 C 0.26 13.36 5.97 85.63 0.51 13.87 16 18 C -0.56 -30.05 9.39 25.60 0.24 -29.81 16 19 H 0.05 2.99 7.81 -2.91 -0.02 2.97 16 20 C 0.02 1.32 5.46 84.65 0.46 1.78 16 21 N -0.92 -50.42 13.29 21.45 0.28 -50.13 16 22 Si 0.97 42.07 29.54 68.60 2.03 44.09 16 23 H -0.27 -11.73 7.11 99.48 0.71 -11.03 16 24 H -0.27 -11.58 7.11 99.48 0.71 -10.88 16 25 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 26 C 0.17 6.73 7.01 42.17 0.30 7.02 16 27 C -0.09 -3.23 9.56 71.23 0.68 -2.55 16 28 C -0.18 -4.79 9.51 22.46 0.21 -4.58 16 29 H 0.26 0.99 7.80 -4.42 -0.03 0.96 16 30 H 0.11 0.90 7.66 -2.39 -0.02 0.88 16 31 H 0.11 0.99 7.66 -2.38 -0.02 0.97 16 32 H 0.17 1.16 6.29 -2.91 -0.02 1.14 16 33 H 0.17 1.17 8.06 -2.91 -0.02 1.14 16 34 H 0.15 2.67 8.06 -2.91 -0.02 2.64 16 35 H 0.23 5.89 8.06 -2.91 -0.02 5.87 16 36 H 0.04 1.93 8.14 -2.39 -0.02 1.92 16 37 H 0.06 2.81 7.01 -2.39 -0.02 2.79 16 38 H 0.27 14.11 8.31 -92.71 -0.77 13.33 16 39 H 0.09 3.15 8.14 -2.38 -0.02 3.13 16 40 H 0.08 2.76 7.05 -2.39 -0.02 2.74 16 41 H 0.10 3.39 6.51 -2.39 -0.02 3.37 16 42 H 0.12 3.51 8.06 -2.91 -0.02 3.48 16 Total: -1.00 -70.42 380.96 7.80 -62.62 By element: Atomic # 1 Polarization: 13.99 SS G_CDS: 1.06 Total: 15.05 kcal Atomic # 6 Polarization: -10.51 SS G_CDS: 6.99 Total: -3.52 kcal Atomic # 7 Polarization: -79.92 SS G_CDS: -1.62 Total: -81.54 kcal Atomic # 8 Polarization: -36.05 SS G_CDS: -0.65 Total: -36.70 kcal Atomic # 14 Polarization: 42.07 SS G_CDS: 2.03 Total: 44.09 kcal Total: -70.42 7.80 -62.62 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001528715457.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.413 kcal (2) G-P(sol) polarization free energy of solvation -70.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.625 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds