Wall clock time and date at job start Sat Apr 11 2020 05:56:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31390 * 1 3 3 Si 1.86794 * 120.00297 * 2 1 4 4 H 1.48496 * 109.47166 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47205 * 299.99898 * 3 2 1 6 6 H 1.48504 * 109.47251 * 60.00062 * 3 2 1 7 7 C 1.38958 * 119.99798 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00042 * 199.94149 * 7 2 1 9 9 N 1.37032 * 119.99816 * 19.94201 * 7 2 1 10 10 C 1.34781 * 119.99909 * 42.41825 * 9 7 2 11 11 O 1.21602 * 120.00015 * 4.11789 * 10 9 7 12 12 C 1.47401 * 119.99976 * 184.11378 * 10 9 7 13 13 C 1.39998 * 120.32066 * 44.98544 * 12 10 9 14 14 C 1.37729 * 120.03329 * 180.02562 * 13 12 10 15 15 C 1.38649 * 120.45343 * 359.97438 * 14 13 12 16 16 C 1.38377 * 120.07495 * 359.96516 * 15 14 13 17 17 C 1.38746 * 120.14574 * 359.77759 * 16 15 14 18 18 O 1.36196 * 119.68145 * 179.82583 * 17 16 15 19 19 C 1.42913 * 116.13122 * 292.06550 * 18 17 16 20 20 C 1.52071 * 110.75967 * 84.34401 * 19 18 17 21 21 C 1.52066 * 112.36963 * 295.21296 * 20 19 18 22 22 O 1.36495 * 120.28722 * 180.02562 * 16 15 14 23 23 C 1.39344 * 120.00197 * 222.41849 * 9 7 2 24 24 C 1.39083 * 119.69810 * 219.16869 * 23 9 7 25 25 C 1.38375 * 119.09381 * 179.74397 * 24 23 9 26 26 C 1.38832 * 118.49389 * 0.50007 * 25 24 23 27 27 C 1.38152 * 119.31415 * 359.47853 * 26 25 24 28 28 N 1.31872 * 120.85337 * 0.27916 * 27 26 25 29 29 H 0.97008 * 119.99710 * 4.92064 * 1 2 3 30 30 H 1.07999 * 119.97999 * 359.97438 * 13 12 10 31 31 H 1.07997 * 119.76954 * 180.02562 * 14 13 12 32 32 H 1.08000 * 119.96445 * 179.97438 * 15 14 13 33 33 H 1.09004 * 109.21892 * 324.01593 * 19 18 17 34 34 H 1.08993 * 109.18471 * 204.65698 * 19 18 17 35 35 H 1.08997 * 108.89892 * 174.46878 * 20 19 18 36 36 H 1.08995 * 108.82169 * 55.90413 * 20 19 18 37 37 H 1.09005 * 109.21513 * 304.45989 * 21 20 19 38 38 H 1.08997 * 109.18121 * 185.10588 * 21 20 19 39 39 H 1.08001 * 120.45602 * 359.97438 * 24 23 9 40 40 H 1.08004 * 120.75510 * 180.28054 * 25 24 23 41 41 H 1.08001 * 120.34244 * 179.75343 * 26 25 24 42 42 H 1.07999 * 119.57277 * 180.29976 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3139 0.0000 0.0000 3 14 2.2480 1.6176 0.0000 4 1 3.7079 1.3462 -0.0006 5 1 1.8893 2.3964 -1.2125 6 1 1.8893 2.3964 1.2125 7 6 2.0086 -1.2034 0.0005 8 1 3.0401 -1.2314 0.3195 9 7 1.3850 -2.3547 -0.4037 10 6 0.5871 -2.3432 -1.4899 11 8 0.4794 -1.3306 -2.1545 12 6 -0.1550 -3.5581 -1.8721 13 6 -0.8323 -4.3070 -0.9024 14 6 -1.5234 -5.4415 -1.2661 15 6 -1.5552 -5.8507 -2.5904 16 6 -0.8909 -5.1185 -3.5586 17 6 -0.1948 -3.9704 -3.2087 18 8 0.4586 -3.2589 -4.1687 19 6 1.5927 -3.8953 -4.7613 20 6 1.1639 -4.8156 -5.8935 21 6 0.3187 -5.9809 -5.4035 22 8 -0.9198 -5.5170 -4.8638 23 6 1.5759 -3.5373 0.3081 24 6 1.7027 -4.7411 -0.3769 25 6 1.8972 -5.9072 0.3421 26 6 1.9477 -5.8305 1.7274 27 6 1.8144 -4.6004 2.3420 28 7 1.6351 -3.5048 1.6304 29 1 -0.4850 0.8370 -0.0721 30 1 -0.8121 -3.9954 0.1315 31 1 -2.0447 -6.0158 -0.5146 32 1 -2.0993 -6.7418 -2.8668 33 1 2.1140 -4.4789 -4.0024 34 1 2.2665 -3.1336 -5.1536 35 1 2.0538 -5.2073 -6.3863 36 1 0.5858 -4.2390 -6.6155 37 1 0.8663 -6.5215 -4.6314 38 1 0.1174 -6.6529 -6.2377 39 1 1.6539 -4.7649 -1.4556 40 1 2.0036 -6.8561 -0.1626 41 1 2.0942 -6.7226 2.3183 42 1 1.8580 -4.5353 3.4192 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001537821050.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:22 Heat of formation + Delta-G solvation = -6.922476 kcal Electronic energy + Delta-G solvation = -30939.629222 eV Core-core repulsion = 26852.009513 eV Total energy + Delta-G solvation = -4087.619709 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.126 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.94398 -39.87958 -38.19965 -37.24931 -36.95985 -34.45701 -32.86868 -32.31617 -31.80938 -30.35342 -29.15580 -28.86303 -26.55196 -25.40884 -23.62043 -22.74728 -22.31785 -21.77049 -21.65463 -19.92411 -18.35234 -17.65237 -17.25326 -16.73507 -16.02801 -15.77853 -15.66772 -15.28403 -15.14699 -14.89510 -14.60584 -14.20523 -14.10044 -13.92692 -13.62148 -13.43852 -13.10401 -13.07032 -12.71895 -12.56502 -12.16553 -11.91767 -11.82620 -11.48044 -11.30684 -11.08076 -10.95118 -10.82109 -10.78316 -10.31676 -10.30000 -9.82782 -9.47833 -9.29590 -8.81841 -8.69221 -8.53099 -8.32064 -8.18429 -7.21503 -6.32327 -4.05864 1.20007 1.30861 1.73958 1.95711 3.25609 3.33995 3.37000 3.41275 3.60321 3.84243 4.01644 4.23209 4.45210 4.60116 4.63347 4.72193 4.92584 5.07504 5.16489 5.20816 5.25690 5.29621 5.32942 5.33834 5.44550 5.52468 5.54276 5.60728 5.64918 5.73510 5.80869 5.88266 5.98526 6.12591 6.24994 6.39189 6.48340 6.57786 6.61854 6.73422 6.75843 7.20399 7.29337 7.50182 7.80062 8.02281 8.42519 8.81767 8.95997 9.35987 9.81301 10.75283 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.010699 B = 0.005744 C = 0.004372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2616.436512 B = 4873.653333 C = 6403.066863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.826 5.826 2 C 0.073 3.927 3 Si 0.920 3.080 4 H -0.268 1.268 5 H -0.277 1.277 6 H -0.282 1.282 7 C -0.334 4.334 8 H 0.091 0.909 9 N -0.380 5.380 10 C 0.537 3.463 11 O -0.477 6.477 12 C -0.098 4.098 13 C -0.069 4.069 14 C -0.118 4.118 15 C -0.112 4.112 16 C 0.053 3.947 17 C 0.100 3.900 18 O -0.298 6.298 19 C 0.059 3.941 20 C -0.186 4.186 21 C 0.060 3.940 22 O -0.318 6.318 23 C 0.366 3.634 24 C -0.215 4.215 25 C -0.054 4.054 26 C -0.236 4.236 27 C 0.126 3.874 28 N -0.491 5.491 29 H 0.271 0.729 30 H 0.130 0.870 31 H 0.131 0.869 32 H 0.132 0.868 33 H 0.054 0.946 34 H 0.103 0.897 35 H 0.087 0.913 36 H 0.083 0.917 37 H 0.056 0.944 38 H 0.100 0.900 39 H 0.119 0.881 40 H 0.122 0.878 41 H 0.121 0.879 42 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.623 -15.873 -4.703 16.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.457 5.457 2 C -0.139 4.139 3 Si 0.746 3.254 4 H -0.192 1.192 5 H -0.203 1.203 6 H -0.208 1.208 7 C -0.460 4.460 8 H 0.108 0.892 9 N -0.092 5.092 10 C 0.325 3.675 11 O -0.349 6.349 12 C -0.102 4.102 13 C -0.088 4.088 14 C -0.136 4.136 15 C -0.130 4.130 16 C 0.009 3.991 17 C 0.055 3.945 18 O -0.214 6.214 19 C -0.016 4.016 20 C -0.224 4.224 21 C -0.015 4.015 22 O -0.235 6.235 23 C 0.136 3.864 24 C -0.239 4.239 25 C -0.080 4.080 26 C -0.258 4.258 27 C -0.035 4.035 28 N -0.206 5.206 29 H 0.081 0.919 30 H 0.148 0.852 31 H 0.149 0.851 32 H 0.150 0.850 33 H 0.072 0.928 34 H 0.121 0.879 35 H 0.106 0.894 36 H 0.101 0.899 37 H 0.074 0.926 38 H 0.118 0.882 39 H 0.137 0.863 40 H 0.140 0.860 41 H 0.139 0.861 42 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 1.085 -14.048 -4.907 14.920 hybrid contribution 0.578 -0.250 -0.225 0.669 sum 1.663 -14.298 -5.132 15.282 Atomic orbital electron populations 1.69880 1.06722 1.28670 1.40463 1.25312 0.94926 1.00036 0.93612 0.86017 0.79899 0.81756 0.77733 1.19201 1.20278 1.20762 1.19198 0.95194 0.83225 1.48377 0.89160 1.41140 1.41232 1.06632 1.20224 1.17658 0.82354 0.86875 0.80656 1.90680 1.61529 1.32518 1.50140 1.20410 1.00605 0.97630 0.91604 1.21348 0.94747 0.93555 0.99172 1.20885 1.00155 0.97163 0.95424 1.21038 1.00840 0.99541 0.91615 1.18956 1.01495 0.94092 0.84542 1.19026 0.96318 0.91757 0.87430 1.86454 1.42402 1.41367 1.51172 1.22617 0.87356 0.97101 0.94550 1.22495 1.01236 0.98289 1.00387 1.22601 0.84944 0.95273 0.98678 1.86352 1.31985 1.82627 1.22532 1.19048 0.92434 0.86798 0.88078 1.21732 1.08618 0.93132 1.00433 1.21121 0.95621 0.97280 0.93984 1.21735 1.10001 0.98967 0.95137 1.22498 0.93946 0.87512 0.99514 1.67454 1.15280 1.31310 1.06544 0.91890 0.85210 0.85106 0.85027 0.92760 0.87853 0.89450 0.89866 0.92563 0.88180 0.86304 0.86043 0.86062 0.83680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -24.53 11.83 55.50 0.66 -23.87 16 2 C 0.07 2.08 4.33 -17.47 -0.08 2.00 16 3 Si 0.92 21.93 29.60 -169.99 -5.03 16.89 16 4 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 5 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 6 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 7 C -0.33 -9.38 8.85 -14.96 -0.13 -9.52 16 8 H 0.09 2.49 7.91 -52.49 -0.42 2.08 16 9 N -0.38 -9.92 2.72 -61.85 -0.17 -10.08 16 10 C 0.54 14.07 6.04 -12.53 -0.08 13.99 16 11 O -0.48 -14.25 14.25 -7.13 -0.10 -14.35 16 12 C -0.10 -2.12 3.34 -104.88 -0.35 -2.47 16 13 C -0.07 -1.30 6.82 -39.11 -0.27 -1.57 16 14 C -0.12 -1.74 10.02 -39.62 -0.40 -2.14 16 15 C -0.11 -1.59 9.99 -39.38 -0.39 -1.98 16 16 C 0.05 0.88 5.73 -39.34 -0.23 0.66 16 17 C 0.10 1.98 5.52 -38.76 -0.21 1.77 16 18 O -0.30 -6.06 9.10 -45.12 -0.41 -6.47 16 19 C 0.06 0.87 6.52 36.68 0.24 1.11 16 20 C -0.19 -2.10 5.93 -27.68 -0.16 -2.26 16 21 C 0.06 0.67 6.51 36.68 0.24 0.91 16 22 O -0.32 -4.85 10.16 -36.82 -0.37 -5.23 16 23 C 0.37 8.19 5.01 -154.70 -0.77 7.42 16 24 C -0.22 -3.95 6.66 -39.22 -0.26 -4.21 16 25 C -0.05 -0.80 10.17 -39.31 -0.40 -1.20 16 26 C -0.24 -3.35 10.11 -39.39 -0.40 -3.75 16 27 C 0.13 2.11 11.18 -17.57 -0.20 1.91 16 28 N -0.49 -10.75 9.94 -12.35 -0.12 -10.87 16 29 H 0.27 7.65 8.32 -40.82 -0.34 7.31 16 30 H 0.13 2.65 6.97 -52.49 -0.37 2.29 16 31 H 0.13 1.52 8.06 -52.49 -0.42 1.09 16 32 H 0.13 1.48 8.06 -52.49 -0.42 1.05 16 33 H 0.05 0.76 7.94 -51.93 -0.41 0.35 16 34 H 0.10 1.41 8.14 -51.93 -0.42 0.98 16 35 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.08 1.00 8.14 -51.93 -0.42 0.57 16 37 H 0.06 0.58 7.93 -51.93 -0.41 0.17 16 38 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.12 2.18 6.07 -52.49 -0.32 1.86 16 40 H 0.12 1.40 8.06 -52.48 -0.42 0.97 16 41 H 0.12 1.31 8.06 -52.49 -0.42 0.89 16 42 H 0.15 1.98 8.06 -52.49 -0.42 1.56 16 LS Contribution 349.62 15.07 5.27 5.27 Total: -1.00 -35.32 349.62 -8.99 -44.31 By element: Atomic # 1 Polarization: 8.59 SS G_CDS: -4.86 Total: 3.72 kcal Atomic # 6 Polarization: 4.52 SS G_CDS: -3.85 Total: 0.67 kcal Atomic # 7 Polarization: -45.19 SS G_CDS: 0.37 Total: -44.83 kcal Atomic # 8 Polarization: -25.16 SS G_CDS: -0.89 Total: -26.05 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.03 Total: 16.89 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -35.32 -8.99 -44.31 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001537821050.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.392 kcal (2) G-P(sol) polarization free energy of solvation -35.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.314 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds