Wall clock time and date at job start Sat Apr 11 2020 05:56:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38332 * 120.80324 * 2 1 4 4 C 1.39419 * 119.18123 * 180.25559 * 3 2 1 5 5 C 1.47997 * 119.60159 * 179.72786 * 4 3 2 6 6 O 1.21571 * 119.99978 * 359.73211 * 5 4 3 7 7 N 1.34777 * 120.00480 * 179.73233 * 5 4 3 8 8 C 1.40484 * 120.00395 * 180.02562 * 7 5 4 9 9 C 1.40677 * 126.08699 * 359.95695 * 8 7 5 10 10 N 1.30901 * 108.38575 * 179.75389 * 9 8 7 11 11 N 1.40065 * 108.41616 * 0.43845 * 10 9 8 12 12 C 1.37312 * 126.07092 * 179.81743 * 11 10 9 13 13 H 1.08002 * 120.00634 * 179.69737 * 12 11 10 14 14 C 1.38992 * 119.99460 * 359.41615 * 12 11 10 15 15 N 1.31294 * 120.00157 * 0.27649 * 14 12 11 16 16 Si 1.86803 * 119.99838 * 180.27795 * 14 12 11 17 17 H 1.48498 * 109.47174 * 90.00076 * 16 14 12 18 18 H 1.48501 * 109.47062 * 210.00027 * 16 14 12 19 19 H 1.48504 * 109.46913 * 329.99826 * 16 14 12 20 20 C 1.35716 * 126.08770 * 179.97438 * 8 7 5 21 21 N 1.32829 * 120.80130 * 359.45837 * 4 3 2 22 22 C 1.31334 * 121.75977 * 0.26822 * 21 4 3 23 23 C 1.39693 * 120.74079 * 0.02562 * 22 21 4 24 24 C 1.48345 * 120.44154 * 180.02562 * 23 22 21 25 25 N 1.34085 * 126.68378 * 179.68798 * 24 23 22 26 26 N 1.28986 * 107.26453 * 179.86915 * 25 24 23 27 27 N 1.28726 * 108.95688 * 0.39418 * 26 25 24 28 28 H 0.96999 * 125.33443 * 179.76629 * 27 26 25 29 29 N 1.28869 * 109.32922 * 359.75120 * 27 26 25 30 30 H 1.09002 * 109.47252 * 270.28037 * 1 2 3 31 31 H 1.09002 * 109.47275 * 30.28340 * 1 2 3 32 32 H 1.08998 * 109.47048 * 150.27895 * 1 2 3 33 33 H 1.08000 * 120.41399 * 0.02562 * 3 2 1 34 34 H 0.97001 * 119.99301 * 359.97438 * 7 5 4 35 35 H 1.08000 * 125.80696 * 0.03176 * 9 8 7 36 36 H 0.97005 * 119.99961 * 179.97438 * 15 14 12 37 37 H 1.07993 * 126.24645 * 359.97438 * 20 8 7 38 38 H 1.08005 * 119.62870 * 179.97438 * 22 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2155 1.1882 0.0000 4 6 3.6091 1.1487 -0.0054 5 6 4.3762 2.4143 -0.0116 6 8 3.7910 3.4799 -0.0168 7 7 5.7237 2.3857 -0.0114 8 6 6.4519 3.5870 -0.0167 9 6 5.9092 4.8849 -0.0233 10 7 6.8960 5.7450 -0.0215 11 7 8.1027 5.0340 -0.0238 12 6 9.3627 5.5799 -0.0264 13 1 10.2301 4.9364 -0.0231 14 6 9.5218 6.9606 -0.0392 15 7 8.4673 7.7429 -0.0433 16 14 11.2358 7.7032 -0.0506 17 1 11.6861 7.8875 -1.4536 18 1 11.2098 9.0188 0.6378 19 1 12.1740 6.7937 0.6551 20 6 7.8042 3.7022 -0.0167 21 7 4.2567 -0.0110 0.0002 22 6 3.6188 -1.1590 0.0058 23 6 2.2225 -1.2000 0.0055 24 6 1.5087 -2.5004 0.0125 25 7 0.1807 -2.6852 0.0188 26 7 -0.0287 -3.9580 0.0206 27 7 1.1047 -4.5682 0.0241 28 1 1.2235 -5.5309 0.0293 29 7 2.0568 -3.6997 0.0193 30 1 -0.3634 0.0050 1.0277 31 1 -0.3634 0.8874 -0.5182 32 1 -0.3633 -0.8925 -0.5095 33 1 1.6955 2.1347 0.0004 34 1 6.1906 1.5355 -0.0069 35 1 4.8574 5.1300 -0.0248 36 1 8.5784 8.7065 -0.0518 37 1 8.5143 2.8885 -0.0122 38 1 4.1801 -2.0817 0.0099 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001591934402.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:43 Heat of formation + Delta-G solvation = 220.291998 kcal Electronic energy + Delta-G solvation = -27035.351081 eV Core-core repulsion = 22918.629289 eV Total energy + Delta-G solvation = -4116.721791 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.114 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -44.88833 -40.79185 -39.69808 -38.30180 -35.36626 -34.38242 -34.19420 -33.54818 -33.08679 -31.22780 -30.20692 -28.23050 -27.90127 -25.90685 -25.00115 -24.53956 -22.95192 -22.72620 -21.03611 -20.40507 -19.62734 -19.30388 -17.75930 -17.58166 -17.15034 -16.77491 -16.57655 -15.46788 -15.10152 -15.04911 -15.03546 -14.50902 -14.13154 -14.08597 -13.69794 -13.23553 -13.17234 -12.98769 -12.87455 -12.85188 -12.53001 -12.24767 -11.82406 -11.67657 -11.55447 -11.42714 -11.25403 -11.14795 -10.95804 -10.52790 -10.17199 -10.06232 -9.70701 -9.32911 -9.20150 -9.13721 -8.81097 -8.05675 -6.68078 -6.55482 -4.21701 0.00499 0.71657 0.97003 1.78690 1.80293 2.81060 3.01413 3.05795 3.11131 3.17489 3.45290 3.56296 3.71942 3.84866 3.87460 4.08571 4.34966 4.46952 4.58527 4.75854 4.84332 4.88156 5.01798 5.02969 5.18302 5.31800 5.47991 5.56234 5.61425 5.87659 5.95227 6.07819 6.27136 6.30976 6.47546 6.89407 6.95652 7.09542 7.23315 7.51943 7.70805 7.86315 8.18530 8.28489 8.60972 8.82207 9.37779 9.66881 10.40416 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.038373 B = 0.001889 C = 0.001802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 729.500383 B =14818.173175 C =15532.514412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.000 4.000 3 C -0.120 4.120 4 C 0.121 3.879 5 C 0.545 3.455 6 O -0.528 6.528 7 N -0.594 5.594 8 C -0.064 4.064 9 C -0.029 4.029 10 N -0.260 5.260 11 N -0.141 5.141 12 C -0.321 4.321 13 H 0.117 0.883 14 C 0.046 3.954 15 N -0.769 5.769 16 Si 0.935 3.065 17 H -0.271 1.271 18 H -0.276 1.276 19 H -0.264 1.264 20 C -0.079 4.079 21 N -0.465 5.465 22 C 0.148 3.852 23 C -0.073 4.073 24 C 0.229 3.771 25 N -0.265 5.265 26 N -0.050 5.050 27 N -0.224 5.224 28 H 0.477 0.523 29 N -0.290 5.290 30 H 0.083 0.917 31 H 0.075 0.925 32 H 0.101 0.899 33 H 0.159 0.841 34 H 0.408 0.592 35 H 0.177 0.823 36 H 0.275 0.725 37 H 0.148 0.852 38 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.518 -23.050 0.088 26.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.010 4.010 3 C -0.141 4.141 4 C -0.017 4.017 5 C 0.329 3.671 6 O -0.405 6.405 7 N -0.235 5.235 8 C -0.170 4.170 9 C -0.205 4.205 10 N -0.091 5.091 11 N 0.092 4.908 12 C -0.454 4.454 13 H 0.135 0.865 14 C -0.172 4.172 15 N -0.395 5.395 16 Si 0.759 3.241 17 H -0.196 1.196 18 H -0.201 1.201 19 H -0.188 1.188 20 C -0.231 4.231 21 N -0.177 5.177 22 C -0.015 4.015 23 C -0.079 4.079 24 C -0.052 4.052 25 N -0.137 5.137 26 N -0.045 5.045 27 N -0.070 5.070 28 H 0.331 0.669 29 N -0.142 5.142 30 H 0.102 0.898 31 H 0.094 0.906 32 H 0.119 0.881 33 H 0.176 0.824 34 H 0.243 0.757 35 H 0.194 0.806 36 H 0.086 0.914 37 H 0.165 0.835 38 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -12.275 -21.131 0.090 24.438 hybrid contribution 0.419 -1.598 0.018 1.652 sum -11.856 -22.729 0.108 25.636 Atomic orbital electron populations 1.21218 0.88612 1.04984 1.03940 1.20378 0.97719 0.90775 0.92134 1.22009 0.93627 0.99416 0.99002 1.21550 0.91888 0.92325 0.95964 1.17550 0.82229 0.86977 0.80354 1.90703 1.69359 1.29423 1.50995 1.42326 1.04946 1.08178 1.68019 1.17287 0.89916 0.85592 1.24166 1.24147 0.99788 0.88985 1.07550 1.78259 0.87544 1.17602 1.25726 1.44569 1.05584 1.01824 1.38849 1.19893 0.80557 0.91672 1.53261 0.86534 1.25655 0.99793 0.96229 0.95487 1.70218 1.29240 1.04918 1.35135 0.85820 0.80430 0.78877 0.78979 1.19587 1.20083 1.18786 1.21287 0.93978 0.88216 1.19587 1.67721 1.40198 0.97600 1.12138 1.22849 0.89583 0.96508 0.92564 1.18323 0.93804 0.87305 1.08423 1.23374 0.88011 0.92202 1.01565 1.76153 1.14213 1.05293 1.18091 1.78951 1.10234 1.00935 1.14379 1.47722 1.01169 1.12397 1.45726 0.66898 1.74958 1.18342 0.98950 1.21910 0.89849 0.90570 0.88067 0.82371 0.75676 0.80588 0.91428 0.83489 0.81268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.10 9.27 36.01 0.33 -0.76 16 2 C 0.00 0.00 5.94 -104.04 -0.62 -0.62 16 3 C -0.12 -1.48 9.32 -39.11 -0.36 -1.85 16 4 C 0.12 1.76 6.75 -83.00 -0.56 1.20 16 5 C 0.54 10.07 7.77 -12.26 -0.10 9.97 16 6 O -0.53 -11.23 13.45 5.30 0.07 -11.16 16 7 N -0.59 -11.29 5.45 -10.81 -0.06 -11.35 16 8 C -0.06 -1.50 6.90 -83.87 -0.58 -2.07 16 9 C -0.03 -0.77 10.85 -17.03 -0.18 -0.95 16 10 N -0.26 -7.59 10.39 30.81 0.32 -7.27 16 11 N -0.14 -3.89 3.74 -11.40 -0.04 -3.93 16 12 C -0.32 -8.51 10.25 -14.82 -0.15 -8.66 16 13 H 0.12 2.75 7.83 -52.49 -0.41 2.34 16 14 C 0.05 1.18 5.50 -17.50 -0.10 1.08 16 15 N -0.77 -21.46 11.81 55.50 0.66 -20.81 16 16 Si 0.94 18.91 29.55 -169.99 -5.02 13.88 16 17 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 18 H -0.28 -5.53 7.11 56.52 0.40 -5.13 16 19 H -0.26 -5.10 7.11 56.52 0.40 -4.70 16 20 C -0.08 -1.89 11.50 -16.38 -0.19 -2.08 16 21 N -0.47 -6.05 9.52 -9.55 -0.09 -6.14 16 22 C 0.15 1.56 10.86 -17.22 -0.19 1.37 16 23 C -0.07 -0.75 5.90 -104.65 -0.62 -1.37 16 24 C 0.23 2.18 7.82 -156.28 -1.22 0.96 16 25 N -0.26 -2.52 9.22 32.14 0.30 -2.23 16 26 N -0.05 -0.39 13.47 60.35 0.81 0.42 16 27 N -0.22 -1.17 7.90 60.35 0.48 -0.70 16 28 H 0.48 0.20 8.96 -340.36 -3.05 -2.85 16 29 N -0.29 -2.26 12.10 32.16 0.39 -1.87 16 30 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 31 H 0.08 0.55 8.10 -51.93 -0.42 0.13 16 32 H 0.10 0.89 5.30 -51.93 -0.28 0.61 16 33 H 0.16 1.89 7.63 -52.49 -0.40 1.49 16 34 H 0.41 6.57 8.14 -40.82 -0.33 6.24 16 35 H 0.18 4.56 5.91 -52.49 -0.31 4.25 16 36 H 0.28 7.02 8.31 -40.82 -0.34 6.68 16 37 H 0.15 2.93 8.06 -52.49 -0.42 2.51 16 38 H 0.17 1.38 7.89 -52.48 -0.41 0.96 16 LS Contribution 340.83 15.07 5.14 5.14 Total: -1.00 -34.85 340.83 -7.18 -42.03 By element: Atomic # 1 Polarization: 13.36 SS G_CDS: -5.60 Total: 7.76 kcal Atomic # 6 Polarization: 0.74 SS G_CDS: -4.53 Total: -3.78 kcal Atomic # 7 Polarization: -56.63 SS G_CDS: 2.76 Total: -53.87 kcal Atomic # 8 Polarization: -11.23 SS G_CDS: 0.07 Total: -11.16 kcal Atomic # 14 Polarization: 18.91 SS G_CDS: -5.02 Total: 13.88 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -34.85 -7.18 -42.03 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001591934402.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 262.322 kcal (2) G-P(sol) polarization free energy of solvation -34.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 227.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.031 kcal (6) G-S(sol) free energy of system = (1) + (5) 220.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds