Wall clock time and date at job start Sat Apr 11 2020 05:56:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38332 * 120.80324 * 2 1 4 4 C 1.39419 * 119.18123 * 180.25559 * 3 2 1 5 5 C 1.47997 * 119.60159 * 179.72786 * 4 3 2 6 6 O 1.21571 * 119.99978 * 359.73211 * 5 4 3 7 7 N 1.34777 * 120.00480 * 179.73233 * 5 4 3 8 8 C 1.40484 * 120.00395 * 180.02562 * 7 5 4 9 9 C 1.40677 * 126.08699 * 359.95695 * 8 7 5 10 10 N 1.30901 * 108.38575 * 179.75389 * 9 8 7 11 11 N 1.40065 * 108.41616 * 0.43845 * 10 9 8 12 12 C 1.37312 * 126.07092 * 179.81743 * 11 10 9 13 13 H 1.08002 * 120.00634 * 179.69737 * 12 11 10 14 14 C 1.38992 * 119.99460 * 359.41615 * 12 11 10 15 15 N 1.31294 * 120.00157 * 0.27649 * 14 12 11 16 16 Si 1.86803 * 119.99838 * 180.27795 * 14 12 11 17 17 H 1.48498 * 109.47174 * 90.00076 * 16 14 12 18 18 H 1.48501 * 109.47062 * 210.00027 * 16 14 12 19 19 H 1.48504 * 109.46913 * 329.99826 * 16 14 12 20 20 C 1.35716 * 126.08770 * 179.97438 * 8 7 5 21 21 N 1.32829 * 120.80130 * 359.45837 * 4 3 2 22 22 C 1.31334 * 121.75977 * 0.26822 * 21 4 3 23 23 C 1.39693 * 120.74079 * 0.02562 * 22 21 4 24 24 C 1.48345 * 120.44154 * 180.02562 * 23 22 21 25 25 N 1.34085 * 126.68378 * 179.68798 * 24 23 22 26 26 N 1.28986 * 107.26453 * 179.86915 * 25 24 23 27 27 N 1.28726 * 108.95688 * 0.39418 * 26 25 24 28 28 H 0.96999 * 125.33443 * 179.76629 * 27 26 25 29 29 N 1.28869 * 109.32922 * 359.75120 * 27 26 25 30 30 H 1.09002 * 109.47252 * 270.28037 * 1 2 3 31 31 H 1.09002 * 109.47275 * 30.28340 * 1 2 3 32 32 H 1.08998 * 109.47048 * 150.27895 * 1 2 3 33 33 H 1.08000 * 120.41399 * 0.02562 * 3 2 1 34 34 H 0.97001 * 119.99301 * 359.97438 * 7 5 4 35 35 H 1.08000 * 125.80696 * 0.03176 * 9 8 7 36 36 H 0.97005 * 119.99961 * 179.97438 * 15 14 12 37 37 H 1.07993 * 126.24645 * 359.97438 * 20 8 7 38 38 H 1.08005 * 119.62870 * 179.97438 * 22 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2155 1.1882 0.0000 4 6 3.6091 1.1487 -0.0054 5 6 4.3762 2.4143 -0.0116 6 8 3.7910 3.4799 -0.0168 7 7 5.7237 2.3857 -0.0114 8 6 6.4519 3.5870 -0.0167 9 6 5.9092 4.8849 -0.0233 10 7 6.8960 5.7450 -0.0215 11 7 8.1027 5.0340 -0.0238 12 6 9.3627 5.5799 -0.0264 13 1 10.2301 4.9364 -0.0231 14 6 9.5218 6.9606 -0.0392 15 7 8.4673 7.7429 -0.0433 16 14 11.2358 7.7032 -0.0506 17 1 11.6861 7.8875 -1.4536 18 1 11.2098 9.0188 0.6378 19 1 12.1740 6.7937 0.6551 20 6 7.8042 3.7022 -0.0167 21 7 4.2567 -0.0110 0.0002 22 6 3.6188 -1.1590 0.0058 23 6 2.2225 -1.2000 0.0055 24 6 1.5087 -2.5004 0.0125 25 7 0.1807 -2.6852 0.0188 26 7 -0.0287 -3.9580 0.0206 27 7 1.1047 -4.5682 0.0241 28 1 1.2235 -5.5309 0.0293 29 7 2.0568 -3.6997 0.0193 30 1 -0.3634 0.0050 1.0277 31 1 -0.3634 0.8874 -0.5182 32 1 -0.3633 -0.8925 -0.5095 33 1 1.6955 2.1347 0.0004 34 1 6.1906 1.5355 -0.0069 35 1 4.8574 5.1300 -0.0248 36 1 8.5784 8.7065 -0.0518 37 1 8.5143 2.8885 -0.0122 38 1 4.1801 -2.0817 0.0099 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001591934402.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:42 Heat of formation + Delta-G solvation = 194.387280 kcal Electronic energy + Delta-G solvation = -27036.474394 eV Core-core repulsion = 22918.629289 eV Total energy + Delta-G solvation = -4117.845104 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.114 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -45.50861 -41.99868 -41.37497 -39.84782 -36.20837 -35.94823 -35.08601 -34.82656 -34.31422 -32.37719 -31.98833 -29.69172 -29.02534 -27.23949 -26.28306 -25.47151 -23.99302 -23.56561 -22.84153 -21.81792 -21.18239 -20.22402 -19.36148 -18.58290 -18.18941 -17.79457 -17.50874 -17.39688 -16.61491 -16.42080 -16.15195 -15.62860 -15.40886 -15.30510 -15.05673 -14.86017 -14.77711 -13.99882 -13.80334 -13.75219 -13.48032 -13.32640 -13.29941 -12.91937 -12.90502 -12.85047 -12.45974 -12.25072 -12.07217 -11.87370 -11.82531 -11.23858 -11.01752 -10.81962 -10.69477 -10.58344 -10.11602 -10.05052 -8.53622 -8.46090 -6.23092 -0.92296 0.06267 0.12541 0.91822 1.29016 1.38157 1.41356 1.59008 1.61287 1.88007 1.96724 2.20953 2.43125 2.49708 2.80122 2.81524 3.02375 3.10361 3.14777 3.55806 3.67047 3.88102 3.99856 4.17592 4.39161 4.44023 4.51375 4.60397 4.69455 4.72521 4.83749 5.00943 5.06416 5.12999 5.28642 5.29970 5.42047 5.50184 5.60184 5.96047 6.28564 6.47111 6.72517 6.75695 7.07945 7.25816 7.46008 7.67405 8.53308 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.038373 B = 0.001889 C = 0.001802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 729.500383 B =14818.173175 C =15532.514412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.003 3.997 3 C -0.117 4.117 4 C 0.099 3.901 5 C 0.548 3.452 6 O -0.560 6.560 7 N -0.593 5.593 8 C -0.051 4.051 9 C -0.054 4.054 10 N -0.308 5.308 11 N -0.166 5.166 12 C -0.353 4.353 13 H 0.142 0.858 14 C -0.007 4.007 15 N -0.823 5.823 16 Si 1.020 2.980 17 H -0.264 1.264 18 H -0.277 1.277 19 H -0.244 1.244 20 C -0.077 4.077 21 N -0.472 5.472 22 C 0.150 3.850 23 C -0.059 4.059 24 C 0.213 3.787 25 N -0.279 5.279 26 N -0.055 5.055 27 N -0.195 5.195 28 H 0.496 0.504 29 N -0.283 5.283 30 H 0.092 0.908 31 H 0.086 0.914 32 H 0.102 0.898 33 H 0.157 0.843 34 H 0.423 0.577 35 H 0.172 0.828 36 H 0.277 0.723 37 H 0.188 0.812 38 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.088 -26.462 0.135 29.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.007 4.007 3 C -0.138 4.138 4 C -0.038 4.038 5 C 0.334 3.666 6 O -0.439 6.439 7 N -0.236 5.236 8 C -0.157 4.157 9 C -0.229 4.229 10 N -0.140 5.140 11 N 0.066 4.934 12 C -0.484 4.484 13 H 0.159 0.841 14 C -0.219 4.219 15 N -0.451 5.451 16 Si 0.839 3.161 17 H -0.189 1.189 18 H -0.202 1.202 19 H -0.167 1.167 20 C -0.227 4.227 21 N -0.183 5.183 22 C -0.013 4.013 23 C -0.065 4.065 24 C -0.068 4.068 25 N -0.151 5.151 26 N -0.050 5.050 27 N -0.046 5.046 28 H 0.356 0.644 29 N -0.136 5.136 30 H 0.110 0.890 31 H 0.105 0.895 32 H 0.120 0.880 33 H 0.175 0.825 34 H 0.261 0.739 35 H 0.189 0.811 36 H 0.087 0.913 37 H 0.205 0.795 38 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges -11.868 -24.624 0.138 27.335 hybrid contribution 0.056 -0.893 0.004 0.894 sum -11.812 -25.517 0.141 28.118 Atomic orbital electron populations 1.21257 0.86974 1.05543 1.04628 1.20562 0.98769 0.90104 0.91271 1.22025 0.92830 1.00280 0.98656 1.20937 0.92047 0.91229 0.99604 1.18178 0.81963 0.88132 0.78287 1.90679 1.69990 1.31343 1.51896 1.42257 1.05193 1.07302 1.68818 1.17355 0.90153 0.86214 1.21974 1.24211 0.99378 0.90458 1.08879 1.78150 0.88851 1.19538 1.27472 1.44854 1.05498 1.02934 1.40138 1.20642 0.80992 0.92846 1.53914 0.84096 1.26902 1.04488 0.96374 0.94124 1.70397 1.32293 1.05283 1.37130 0.84579 0.74545 0.77746 0.79245 1.18897 1.20180 1.16711 1.21983 0.94867 0.88100 1.17799 1.67628 1.40579 0.97694 1.12439 1.23231 0.89968 0.96385 0.91696 1.18436 0.93860 0.87825 1.06372 1.23204 0.88193 0.92259 1.03112 1.76144 1.14268 1.06111 1.18598 1.78923 1.10784 1.00553 1.14694 1.47803 1.00153 1.13243 1.43398 0.64441 1.74920 1.18741 0.98704 1.21248 0.88960 0.89504 0.88002 0.82497 0.73871 0.81141 0.91336 0.79510 0.78628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.91 9.27 71.24 0.66 -1.24 16 2 C 0.00 0.05 5.94 -19.48 -0.12 -0.06 16 3 C -0.12 -2.83 9.32 22.58 0.21 -2.62 16 4 C 0.10 2.83 6.75 41.87 0.28 3.12 16 5 C 0.55 20.57 7.77 86.83 0.68 21.25 16 6 O -0.56 -24.77 13.45 -3.94 -0.05 -24.83 16 7 N -0.59 -22.53 5.45 -306.38 -1.67 -24.20 16 8 C -0.05 -2.42 6.90 37.76 0.26 -2.16 16 9 C -0.05 -2.99 10.85 85.43 0.93 -2.06 16 10 N -0.31 -18.81 10.39 -56.45 -0.59 -19.40 16 11 N -0.17 -9.33 3.74 -189.99 -0.71 -10.04 16 12 C -0.35 -18.83 10.25 84.02 0.86 -17.97 16 13 H 0.14 6.51 7.83 -2.91 -0.02 6.48 16 14 C -0.01 -0.37 5.50 84.95 0.47 0.09 16 15 N -0.82 -47.80 11.81 21.66 0.26 -47.55 16 16 Si 1.02 38.77 29.55 68.60 2.03 40.80 16 17 H -0.26 -9.67 7.11 99.48 0.71 -8.97 16 18 H -0.28 -10.42 7.11 99.48 0.71 -9.71 16 19 H -0.24 -8.40 7.11 99.48 0.71 -7.70 16 20 C -0.08 -3.66 11.50 83.38 0.96 -2.70 16 21 N -0.47 -11.58 9.52 -184.14 -1.75 -13.33 16 22 C 0.15 2.81 10.86 85.12 0.92 3.74 16 23 C -0.06 -1.09 5.90 -19.88 -0.12 -1.21 16 24 C 0.21 3.47 7.82 137.32 1.07 4.55 16 25 N -0.28 -4.63 9.22 -52.22 -0.48 -5.11 16 26 N -0.06 -0.71 13.47 37.02 0.50 -0.21 16 27 N -0.19 -1.41 7.90 37.02 0.29 -1.12 16 28 H 0.50 -1.31 8.96 -347.53 -3.12 -4.42 16 29 N -0.28 -3.50 12.10 -52.17 -0.63 -4.13 16 30 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 31 H 0.09 1.12 8.10 -2.39 -0.02 1.10 16 32 H 0.10 1.58 5.30 -2.39 -0.01 1.56 16 33 H 0.16 3.78 7.63 -2.91 -0.02 3.76 16 34 H 0.42 13.23 8.14 -92.71 -0.75 12.48 16 35 H 0.17 9.42 5.91 -2.91 -0.02 9.40 16 36 H 0.28 14.75 8.31 -92.70 -0.77 13.98 16 37 H 0.19 7.08 8.06 -2.91 -0.02 7.05 16 38 H 0.20 2.54 7.89 -2.91 -0.02 2.51 16 Total: -1.00 -79.22 340.83 1.58 -77.64 By element: Atomic # 1 Polarization: 31.44 SS G_CDS: -2.68 Total: 28.76 kcal Atomic # 6 Polarization: -4.36 SS G_CDS: 7.07 Total: 2.71 kcal Atomic # 7 Polarization: -120.31 SS G_CDS: -4.79 Total: -125.09 kcal Atomic # 8 Polarization: -24.77 SS G_CDS: -0.05 Total: -24.83 kcal Atomic # 14 Polarization: 38.77 SS G_CDS: 2.03 Total: 40.80 kcal Total: -79.22 1.58 -77.64 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001591934402.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 272.031 kcal (2) G-P(sol) polarization free energy of solvation -79.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 192.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.643 kcal (6) G-S(sol) free energy of system = (1) + (5) 194.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds