Wall clock time and date at job start Sat Apr 11 2020 05:55:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86801 * 119.99846 * 2 1 4 4 H 1.48499 * 109.47133 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47313 * 300.00237 * 3 2 1 6 6 H 1.48496 * 109.47151 * 60.00074 * 3 2 1 7 7 C 1.38944 * 120.00230 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00330 * 179.97438 * 7 2 1 9 9 N 1.37105 * 119.99781 * 359.97438 * 7 2 1 10 10 C 1.34778 * 119.99882 * 180.02562 * 9 7 2 11 11 O 1.21294 * 120.00019 * 359.97438 * 10 9 7 12 12 C 1.50698 * 119.99978 * 179.97438 * 10 9 7 13 13 N 1.46502 * 109.47009 * 179.97438 * 12 10 9 14 14 N 1.28619 * 125.84355 * 270.03955 * 13 12 10 15 15 N 1.28488 * 111.10121 * 179.70700 * 14 13 12 16 16 C 1.34356 * 109.23802 * 0.42136 * 15 14 13 17 17 C 1.48238 * 127.05106 * 179.85786 * 16 15 14 18 18 C 1.39409 * 120.13027 * 324.68756 * 17 16 15 19 19 C 1.37997 * 119.87389 * 179.97438 * 18 17 16 20 20 C 1.38335 * 120.12799 * 359.97438 * 19 18 17 21 21 C 1.38340 * 120.25738 * 0.02562 * 20 19 18 22 22 C 1.37997 * 120.12760 * 359.97438 * 21 20 19 23 23 C 1.36627 * 125.84709 * 90.00285 * 13 12 10 24 24 C 1.47895 * 127.27389 * 0.02750 * 23 13 12 25 25 N 1.34209 * 126.70070 * 0.02562 * 24 23 13 26 26 N 1.28982 * 107.24740 * 180.02562 * 25 24 23 27 27 N 1.28718 * 109.00018 * 359.97438 * 26 25 24 28 28 H 0.96997 * 125.32108 * 180.02562 * 27 26 25 29 29 N 1.28877 * 109.36091 * 359.73494 * 27 26 25 30 30 H 0.97000 * 119.99804 * 359.97438 * 1 2 3 31 31 H 0.96990 * 119.99692 * 359.97438 * 9 7 2 32 32 H 1.09001 * 109.47140 * 59.99918 * 12 10 9 33 33 H 1.08996 * 109.46953 * 299.99445 * 12 10 9 34 34 H 1.08000 * 120.06625 * 359.97438 * 18 17 16 35 35 H 1.08000 * 119.94013 * 180.02562 * 19 18 17 36 36 H 1.07998 * 119.87264 * 179.74762 * 20 19 18 37 37 H 1.08002 * 119.93252 * 180.02562 * 21 20 19 38 38 H 1.07998 * 120.06259 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.7081 1.3465 -0.0006 5 1 1.8893 2.3965 -1.2125 6 1 1.8894 2.3964 1.2125 7 6 2.0089 -1.2033 -0.0005 8 1 3.0889 -1.2033 -0.0010 9 7 1.3234 -2.3906 -0.0005 10 6 1.9973 -3.5578 -0.0005 11 8 3.2102 -3.5578 -0.0010 12 6 1.2438 -4.8629 0.0000 13 7 2.1959 -5.9764 -0.0007 14 7 2.6851 -6.5484 -1.0437 15 7 3.4973 -7.4890 -0.7173 16 6 3.5624 -7.5728 0.6220 17 6 4.3756 -8.5220 1.4191 18 6 4.5791 -9.8236 0.9629 19 6 5.3374 -10.7026 1.7089 20 6 5.8957 -10.2944 2.9070 21 6 5.6972 -9.0040 3.3646 22 6 4.9407 -8.1162 2.6272 23 6 2.7167 -6.5846 1.1064 24 6 2.4382 -6.2586 2.5218 25 7 1.6172 -5.2997 2.9776 26 7 1.6561 -5.3435 4.2660 27 7 2.4593 -6.2815 4.6294 28 1 2.6642 -6.5202 5.5470 29 7 2.9441 -6.8578 3.5836 30 1 -0.4850 0.8401 0.0004 31 1 0.3535 -2.3906 0.0002 32 1 0.6168 -4.9209 -0.8897 33 1 0.6176 -4.9205 0.8903 34 1 4.1441 -10.1433 0.0276 35 1 5.4961 -11.7111 1.3564 36 1 6.4851 -10.9870 3.4894 37 1 6.1359 -8.6907 4.3005 38 1 4.7868 -7.1090 2.9853 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001592678720.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:09 Heat of formation + Delta-G solvation = 203.732640 kcal Electronic energy + Delta-G solvation = -28663.047978 eV Core-core repulsion = 24545.608119 eV Total energy + Delta-G solvation = -4117.439859 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.114 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -45.65752 -44.35601 -40.31762 -39.82709 -36.40062 -35.89377 -35.40040 -35.10717 -33.45382 -32.89981 -31.76327 -30.69355 -29.89615 -26.89356 -26.13995 -25.71600 -24.45313 -23.58562 -22.67129 -21.97808 -21.42313 -20.42061 -19.96703 -18.74925 -18.49354 -18.23920 -17.72276 -17.07260 -16.97103 -16.45008 -16.31794 -16.00528 -15.65298 -15.48780 -15.29661 -14.58446 -14.53489 -14.26203 -13.75960 -13.67142 -13.60513 -13.42313 -13.21664 -12.94961 -12.71483 -12.61118 -12.49917 -12.45762 -12.20541 -12.15849 -12.03897 -11.79843 -11.65501 -11.62994 -10.60349 -10.44555 -10.13946 -9.75151 -9.32442 -8.54938 -6.04583 -0.60727 0.02470 0.31105 0.56165 0.74572 1.03527 1.30467 1.35859 1.40471 1.53644 1.54898 1.80952 2.22596 2.30834 2.71552 2.91517 2.98161 3.05369 3.13077 3.55646 3.73233 3.83993 3.97099 4.11502 4.14120 4.18160 4.28757 4.33537 4.44188 4.54463 4.69784 4.77196 5.07528 5.13382 5.21911 5.34489 5.52812 5.62685 5.66543 5.67881 5.85582 6.12435 6.43062 6.91309 6.99855 7.14575 7.34930 7.88689 8.61758 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.016468 B = 0.003175 C = 0.002946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1699.890937 B = 8815.967471 C = 9502.317912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C -0.002 4.002 3 Si 0.992 3.008 4 H -0.277 1.277 5 H -0.268 1.268 6 H -0.267 1.267 7 C -0.335 4.335 8 H 0.077 0.923 9 N -0.546 5.546 10 C 0.431 3.569 11 O -0.627 6.627 12 C 0.103 3.897 13 N -0.237 5.237 14 N -0.067 5.067 15 N -0.276 5.276 16 C 0.066 3.934 17 C -0.041 4.041 18 C -0.096 4.096 19 C -0.125 4.125 20 C -0.102 4.102 21 C -0.122 4.122 22 C -0.082 4.082 23 C 0.052 3.948 24 C 0.232 3.768 25 N -0.289 5.289 26 N -0.043 5.043 27 N -0.189 5.189 28 H 0.499 0.501 29 N -0.250 5.250 30 H 0.282 0.718 31 H 0.403 0.597 32 H 0.160 0.840 33 H 0.152 0.848 34 H 0.124 0.876 35 H 0.152 0.848 36 H 0.156 0.844 37 H 0.150 0.850 38 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.708 -19.604 12.434 23.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.204 4.204 3 Si 0.815 3.185 4 H -0.201 1.201 5 H -0.193 1.193 6 H -0.192 1.192 7 C -0.464 4.464 8 H 0.095 0.905 9 N -0.181 5.181 10 C 0.217 3.783 11 O -0.515 6.515 12 C -0.021 4.021 13 N -0.031 5.031 14 N -0.046 5.046 15 N -0.139 5.139 16 C -0.075 4.075 17 C -0.043 4.043 18 C -0.115 4.115 19 C -0.143 4.143 20 C -0.120 4.120 21 C -0.140 4.140 22 C -0.102 4.102 23 C -0.083 4.083 24 C -0.049 4.049 25 N -0.162 5.162 26 N -0.037 5.037 27 N -0.041 5.041 28 H 0.360 0.640 29 N -0.105 5.105 30 H 0.092 0.908 31 H 0.238 0.762 32 H 0.177 0.823 33 H 0.169 0.831 34 H 0.142 0.858 35 H 0.169 0.831 36 H 0.174 0.826 37 H 0.167 0.833 38 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 3.985 -19.038 11.302 22.496 hybrid contribution -0.149 1.135 0.833 1.416 sum 3.835 -17.903 12.135 21.966 Atomic orbital electron populations 1.69653 1.06687 1.29699 1.48666 1.26015 0.96551 1.02240 0.95585 0.84898 0.77909 0.77066 0.78630 1.20147 1.19250 1.19235 1.19631 0.92602 0.83484 1.50697 0.90505 1.41660 1.09581 1.03994 1.62896 1.20121 0.87998 0.85595 0.84600 1.90578 1.15568 1.87464 1.57894 1.22168 0.89134 0.80829 1.09984 1.46840 1.29875 1.23143 1.03244 1.78090 1.09170 1.05845 1.11503 1.75142 1.13683 1.13152 1.11921 1.21033 0.98748 0.97552 0.90210 1.17727 0.99461 0.92395 0.94764 1.21303 0.98391 0.91841 0.99942 1.21377 0.97299 1.00376 0.95234 1.21658 0.98254 0.96192 0.95901 1.21295 0.98446 0.93636 1.00590 1.21351 0.95694 1.00428 0.92758 1.18805 1.04821 1.00051 0.84608 1.21731 0.97305 0.93953 0.91904 1.76202 1.19947 1.18767 1.01302 1.78865 1.09954 1.08506 1.06408 1.47933 1.25622 1.18919 1.11641 0.64010 1.75275 1.20555 1.21561 0.93079 0.90843 0.76241 0.82255 0.83071 0.85794 0.83050 0.82624 0.83254 0.86462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -47.30 13.05 21.66 0.28 -47.02 16 2 C 0.00 -0.12 5.50 84.92 0.47 0.35 16 3 Si 0.99 42.27 29.55 68.60 2.03 44.30 16 4 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 5 H -0.27 -10.87 7.11 99.48 0.71 -10.16 16 6 H -0.27 -10.83 7.11 99.48 0.71 -10.13 16 7 C -0.33 -18.78 9.68 84.04 0.81 -17.97 16 8 H 0.08 4.68 7.16 -2.91 -0.02 4.66 16 9 N -0.55 -27.48 5.29 -306.98 -1.62 -29.11 16 10 C 0.43 20.80 7.85 87.66 0.69 21.49 16 11 O -0.63 -36.14 16.01 -3.07 -0.05 -36.19 16 12 C 0.10 3.75 6.49 85.63 0.56 4.31 16 13 N -0.24 -9.22 2.86 -337.29 -0.97 -10.18 16 14 N -0.07 -2.76 13.10 37.02 0.48 -2.27 16 15 N -0.28 -10.83 12.40 -48.18 -0.60 -11.42 16 16 C 0.07 2.36 6.82 41.55 0.28 2.65 16 17 C -0.04 -1.18 5.79 -20.05 -0.12 -1.30 16 18 C -0.10 -2.26 9.78 22.49 0.22 -2.04 16 19 C -0.13 -2.08 10.03 22.24 0.22 -1.86 16 20 C -0.10 -1.45 10.04 22.32 0.22 -1.22 16 21 C -0.12 -2.06 10.03 22.24 0.22 -1.84 16 22 C -0.08 -2.01 7.74 22.50 0.17 -1.84 16 23 C 0.05 1.91 7.01 41.09 0.29 2.20 16 24 C 0.23 7.50 7.72 137.10 1.06 8.55 16 25 N -0.29 -9.58 10.76 -52.42 -0.56 -10.14 16 26 N -0.04 -1.11 13.46 37.02 0.50 -0.61 16 27 N -0.19 -3.36 7.90 37.02 0.29 -3.07 16 28 H 0.50 2.93 8.96 -347.51 -3.11 -0.19 16 29 N -0.25 -6.04 8.14 -52.37 -0.43 -6.46 16 30 H 0.28 13.66 8.31 -92.71 -0.77 12.89 16 31 H 0.40 18.80 7.90 -92.72 -0.73 18.07 16 32 H 0.16 4.67 8.14 -2.39 -0.02 4.65 16 33 H 0.15 4.87 6.59 -2.39 -0.02 4.86 16 34 H 0.12 2.91 8.06 -2.91 -0.02 2.89 16 35 H 0.15 1.63 8.06 -2.91 -0.02 1.61 16 36 H 0.16 1.14 8.06 -2.91 -0.02 1.12 16 37 H 0.15 1.64 8.06 -2.91 -0.02 1.62 16 38 H 0.12 3.11 5.53 -2.91 -0.02 3.10 16 Total: -1.00 -78.95 343.13 1.80 -77.15 By element: Atomic # 1 Polarization: 26.21 SS G_CDS: -2.66 Total: 23.55 kcal Atomic # 6 Polarization: 6.38 SS G_CDS: 5.10 Total: 11.48 kcal Atomic # 7 Polarization: -117.68 SS G_CDS: -2.62 Total: -120.30 kcal Atomic # 8 Polarization: -36.14 SS G_CDS: -0.05 Total: -36.19 kcal Atomic # 14 Polarization: 42.27 SS G_CDS: 2.03 Total: 44.30 kcal Total: -78.95 1.80 -77.15 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592678720.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 280.886 kcal (2) G-P(sol) polarization free energy of solvation -78.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 201.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.153 kcal (6) G-S(sol) free energy of system = (1) + (5) 203.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds