Wall clock time and date at job start Sat Apr 11 2020 05:55:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30826 * 1 3 3 Si 1.86807 * 119.99692 * 2 1 4 4 H 1.48505 * 109.46811 * 269.99640 * 3 2 1 5 5 H 1.48494 * 109.47079 * 29.99836 * 3 2 1 6 6 H 1.48501 * 109.46964 * 150.00105 * 3 2 1 7 7 C 1.39933 * 120.00665 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00830 * 195.29871 * 7 2 1 9 9 C 1.41440 * 119.99438 * 15.29187 * 7 2 1 10 10 C 1.40791 * 120.17891 * 202.76996 * 9 7 2 11 11 C 1.37709 * 120.04355 * 180.02562 * 10 9 7 12 12 C 1.38379 * 120.40980 * 359.67856 * 11 10 9 13 13 C 1.39879 * 120.35738 * 0.60201 * 12 11 10 14 14 C 1.47882 * 120.02498 * 179.69821 * 13 12 11 15 15 O 1.21554 * 119.99783 * 179.72743 * 14 13 12 16 16 N 1.34773 * 120.00109 * 359.72485 * 14 13 12 17 17 C 1.46494 * 120.00078 * 174.82057 * 16 14 13 18 18 H 1.09004 * 109.47529 * 324.05921 * 17 16 14 19 19 C 1.53004 * 109.47500 * 84.06453 * 17 16 14 20 20 C 1.50693 * 109.47055 * 186.56606 * 19 17 16 21 21 O 1.20823 * 120.00523 * 6.71512 * 20 19 17 22 22 O 1.34235 * 119.99766 * 186.71541 * 20 19 17 23 23 C 1.50707 * 109.47348 * 204.06652 * 17 16 14 24 24 C 1.38654 * 120.78634 * 319.71942 * 23 17 16 25 25 C 1.38202 * 119.16287 * 179.75549 * 24 23 17 26 26 N 1.31875 * 120.75873 * 0.52986 * 25 24 23 27 27 C 1.31870 * 121.73008 * 359.74188 * 26 25 24 28 28 C 1.38203 * 120.76180 * 359.97438 * 27 26 25 29 29 C 1.39040 * 119.94720 * 359.41902 * 13 12 11 30 30 H 0.97002 * 120.00026 * 0.02562 * 1 2 3 31 31 H 1.08002 * 119.97720 * 0.02562 * 10 9 7 32 32 H 1.07995 * 119.79751 * 180.02562 * 11 10 9 33 33 H 1.08001 * 119.82011 * 180.30343 * 12 11 10 34 34 H 0.97003 * 119.99953 * 354.82198 * 16 14 13 35 35 H 1.09000 * 109.46827 * 66.56606 * 19 17 16 36 36 H 1.09000 * 109.46619 * 306.56509 * 19 17 16 37 37 H 0.96698 * 117.00142 * 179.97438 * 22 20 19 38 38 H 1.08000 * 120.41931 * 359.97438 * 24 23 17 39 39 H 1.07996 * 119.62192 * 180.24918 * 25 24 23 40 40 H 1.07997 * 119.61891 * 180.02562 * 27 26 25 41 41 H 1.07999 * 120.41633 * 180.02562 * 28 27 26 42 42 H 1.08006 * 120.19711 * 180.24848 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 2.4897 2.0464 -1.4001 5 1 1.4396 2.6527 0.7000 6 1 3.5398 1.4403 0.7000 7 6 2.0081 -1.2118 0.0005 8 1 3.0593 -1.2283 0.2473 9 6 1.3384 -2.4151 -0.3220 10 6 1.8505 -3.6502 0.1192 11 6 1.1966 -4.8202 -0.1968 12 6 0.0312 -4.7918 -0.9425 13 6 -0.4894 -3.5747 -1.3945 14 6 -1.7317 -3.5535 -2.1965 15 8 -2.1863 -2.4953 -2.5849 16 7 -2.3597 -4.7076 -2.4968 17 6 -3.6486 -4.6805 -3.1927 18 1 -4.2294 -3.8247 -2.8487 19 6 -3.4122 -4.5640 -4.6998 20 6 -4.7319 -4.3741 -5.4021 21 8 -5.7416 -4.2144 -4.7580 22 8 -4.7858 -4.3825 -6.7433 23 6 -4.4046 -5.9509 -2.8995 24 6 -3.7496 -7.1722 -2.8545 25 6 -4.4750 -8.3155 -2.5777 26 7 -5.7756 -8.2549 -2.3683 27 6 -6.4321 -7.1120 -2.4087 28 6 -5.7724 -5.9269 -2.6741 29 6 0.1589 -2.3845 -1.0844 30 1 -0.4850 0.8401 -0.0004 31 1 2.7567 -3.6800 0.7060 32 1 1.5926 -5.7653 0.1440 33 1 -0.4766 -5.7148 -1.1807 34 1 -1.9583 -5.5561 -2.2522 35 1 -2.9343 -5.4735 -5.0640 36 1 -2.7671 -3.7088 -4.9013 37 1 -5.6548 -4.2572 -7.1486 38 1 -2.6855 -7.2288 -3.0300 39 1 -3.9716 -9.2701 -2.5367 40 1 -7.4974 -7.1018 -2.2317 41 1 -6.3155 -4.9939 -2.7054 42 1 -0.2417 -1.4422 -1.4279 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601077530.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:40 Heat of formation + Delta-G solvation = -94.009335 kcal Electronic energy + Delta-G solvation = -28477.870304 eV Core-core repulsion = 24386.474225 eV Total energy + Delta-G solvation = -4091.396079 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.126 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.99807 -40.89944 -40.67608 -38.89191 -37.42711 -36.73875 -35.61784 -33.65238 -32.18942 -32.10859 -31.39080 -31.15300 -27.35952 -26.68021 -24.70706 -24.12360 -23.34544 -22.76817 -21.66021 -21.21112 -19.68629 -19.23985 -18.56324 -17.98892 -17.41298 -17.05768 -16.84201 -16.83201 -16.55321 -16.43617 -16.19938 -15.90986 -15.29081 -15.02384 -14.92549 -14.58840 -14.42447 -14.33388 -14.28965 -14.17998 -13.65533 -13.43292 -12.93376 -12.82908 -12.78931 -12.56503 -12.52633 -12.36852 -12.16474 -11.88937 -11.71882 -11.51311 -11.09534 -10.93760 -10.69343 -10.51719 -10.29720 -10.07798 -9.48701 -9.36153 -8.63055 -6.38057 0.12818 0.20286 0.37122 1.02905 1.14127 1.37186 1.48559 1.51144 1.74390 2.04731 2.19184 2.40404 2.79322 2.83667 3.23706 3.57634 3.61804 3.73067 3.78342 3.99329 4.10316 4.15851 4.22629 4.32116 4.43824 4.55676 4.61484 4.62621 4.67955 4.88640 4.92625 4.96504 5.09416 5.17970 5.21578 5.34708 5.40486 5.53406 5.56131 5.74380 5.86965 5.93709 6.09584 6.29860 6.45959 6.65737 6.89182 6.93173 6.96298 6.99920 7.22089 8.30478 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.014265 B = 0.002915 C = 0.002600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1962.328585 B = 9603.567467 C =10766.790178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.825 5.825 2 C 0.028 3.972 3 Si 0.983 3.017 4 H -0.265 1.265 5 H -0.271 1.271 6 H -0.252 1.252 7 C -0.493 4.493 8 H 0.083 0.917 9 C 0.064 3.936 10 C -0.216 4.216 11 C -0.096 4.096 12 C -0.195 4.195 13 C -0.140 4.140 14 C 0.568 3.432 15 O -0.578 6.578 16 N -0.705 5.705 17 C 0.205 3.795 18 H 0.079 0.921 19 C -0.123 4.123 20 C 0.489 3.511 21 O -0.533 6.533 22 O -0.511 6.511 23 C -0.061 4.061 24 C -0.162 4.162 25 C 0.095 3.905 26 N -0.504 5.504 27 C 0.089 3.911 28 C -0.145 4.145 29 C -0.132 4.132 30 H 0.285 0.715 31 H 0.107 0.893 32 H 0.139 0.861 33 H 0.139 0.861 34 H 0.416 0.584 35 H 0.137 0.863 36 H 0.109 0.891 37 H 0.429 0.571 38 H 0.162 0.838 39 H 0.187 0.813 40 H 0.173 0.827 41 H 0.136 0.864 42 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.832 -14.002 -9.435 18.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.451 5.451 2 C -0.187 4.187 3 Si 0.804 3.196 4 H -0.190 1.190 5 H -0.196 1.196 6 H -0.175 1.175 7 C -0.523 4.523 8 H 0.101 0.899 9 C 0.061 3.939 10 C -0.236 4.236 11 C -0.114 4.114 12 C -0.215 4.215 13 C -0.143 4.143 14 C 0.359 3.641 15 O -0.458 6.458 16 N -0.360 5.360 17 C 0.099 3.901 18 H 0.097 0.903 19 C -0.162 4.162 20 C 0.332 3.668 21 O -0.423 6.423 22 O -0.325 6.325 23 C -0.070 4.070 24 C -0.182 4.182 25 C -0.062 4.062 26 N -0.213 5.213 27 C -0.067 4.067 28 C -0.165 4.165 29 C -0.152 4.152 30 H 0.096 0.904 31 H 0.125 0.875 32 H 0.156 0.844 33 H 0.156 0.844 34 H 0.256 0.744 35 H 0.155 0.845 36 H 0.127 0.873 37 H 0.291 0.709 38 H 0.180 0.820 39 H 0.204 0.796 40 H 0.190 0.810 41 H 0.154 0.846 42 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -8.731 -13.890 -9.147 18.784 hybrid contribution 0.178 1.877 -0.181 1.894 sum -8.553 -12.013 -9.328 17.449 Atomic orbital electron populations 1.69877 1.09101 1.30406 1.35733 1.26841 0.95451 1.04914 0.91465 0.85180 0.79168 0.75861 0.79400 1.18987 1.19612 1.17503 1.19895 0.97659 0.91904 1.42813 0.89904 1.17959 0.92082 0.93848 0.89970 1.21415 1.03138 0.92881 1.06191 1.20918 0.95133 0.97578 0.97779 1.20866 0.99263 0.95253 1.06090 1.19720 0.95956 0.95569 1.03044 1.18724 0.83950 0.83229 0.78246 1.90705 1.67757 1.32349 1.55026 1.45721 1.21319 1.08989 1.59934 1.19300 0.83995 0.96277 0.90491 0.90281 1.21742 0.93524 1.07539 0.93374 1.23139 0.91168 0.71503 0.81001 1.90695 1.37978 1.46305 1.67285 1.84487 1.42603 1.84096 1.21304 1.20195 0.94486 0.94323 0.97965 1.22242 1.02786 0.92042 1.01096 1.23250 0.89446 0.99540 0.93946 1.67721 1.10780 1.29497 1.13303 1.23046 1.01300 0.87154 0.95230 1.22187 0.94535 1.00826 0.98993 1.21621 0.97565 0.96748 0.99279 0.90397 0.87530 0.84359 0.84381 0.74409 0.84489 0.87311 0.70924 0.82019 0.79617 0.80988 0.84646 0.87467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -45.38 10.69 21.82 0.23 -45.15 16 2 C 0.03 1.43 5.21 85.25 0.44 1.87 16 3 Si 0.98 39.10 29.59 68.60 2.03 41.13 16 4 H -0.26 -10.34 7.11 99.48 0.71 -9.64 16 5 H -0.27 -10.41 7.11 99.48 0.71 -9.70 16 6 H -0.25 -9.46 7.11 99.48 0.71 -8.75 16 7 C -0.49 -26.33 9.07 23.47 0.21 -26.12 16 8 H 0.08 4.18 7.89 -2.91 -0.02 4.16 16 9 C 0.06 3.36 5.60 -21.32 -0.12 3.24 16 10 C -0.22 -9.74 9.78 22.77 0.22 -9.52 16 11 C -0.10 -3.58 10.01 22.18 0.22 -3.36 16 12 C -0.20 -7.07 9.54 22.70 0.22 -6.86 16 13 C -0.14 -6.21 5.87 -20.13 -0.12 -6.33 16 14 C 0.57 23.01 7.72 86.80 0.67 23.68 16 15 O -0.58 -28.08 15.90 -3.88 -0.06 -28.14 16 16 N -0.71 -19.88 4.98 -448.93 -2.24 -22.11 16 17 C 0.20 5.30 1.93 44.25 0.09 5.39 16 18 H 0.08 2.60 7.24 -2.38 -0.02 2.58 16 19 C -0.12 -2.70 5.54 29.85 0.17 -2.54 16 20 C 0.49 10.74 8.01 71.23 0.57 11.31 16 21 O -0.53 -14.07 13.69 21.97 0.30 -13.77 16 22 O -0.51 -8.29 13.42 -51.46 -0.69 -8.98 16 23 C -0.06 -1.34 4.51 -19.67 -0.09 -1.43 16 24 C -0.16 -2.71 9.14 22.36 0.20 -2.51 16 25 C 0.09 1.61 11.18 84.68 0.95 2.56 16 26 N -0.50 -10.80 10.36 -195.85 -2.03 -12.83 16 27 C 0.09 1.85 11.18 84.68 0.95 2.80 16 28 C -0.15 -3.33 8.28 22.36 0.19 -3.14 16 29 C -0.13 -7.05 8.26 23.01 0.19 -6.86 16 30 H 0.29 14.53 8.30 -92.71 -0.77 13.76 16 31 H 0.11 4.45 8.06 -2.91 -0.02 4.43 16 32 H 0.14 3.95 8.06 -2.91 -0.02 3.93 16 33 H 0.14 3.59 6.39 -2.91 -0.02 3.57 16 34 H 0.42 9.07 5.01 -92.71 -0.46 8.61 16 35 H 0.14 2.15 8.14 -2.39 -0.02 2.13 16 36 H 0.11 2.78 7.97 -2.39 -0.02 2.77 16 37 H 0.43 3.23 9.10 -74.06 -0.67 2.55 16 38 H 0.16 1.76 7.04 -2.91 -0.02 1.74 16 39 H 0.19 1.92 8.06 -2.91 -0.02 1.89 16 40 H 0.17 2.77 8.06 -2.91 -0.02 2.75 16 41 H 0.14 3.32 6.95 -2.91 -0.02 3.30 16 42 H 0.11 6.44 5.51 -2.91 -0.02 6.42 16 Total: -1.00 -73.65 362.58 2.47 -71.18 By element: Atomic # 1 Polarization: 36.51 SS G_CDS: -0.03 Total: 36.48 kcal Atomic # 6 Polarization: -22.76 SS G_CDS: 4.96 Total: -17.81 kcal Atomic # 7 Polarization: -76.06 SS G_CDS: -4.03 Total: -80.09 kcal Atomic # 8 Polarization: -50.44 SS G_CDS: -0.45 Total: -50.89 kcal Atomic # 14 Polarization: 39.10 SS G_CDS: 2.03 Total: 41.13 kcal Total: -73.65 2.47 -71.18 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601077530.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.828 kcal (2) G-P(sol) polarization free energy of solvation -73.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.182 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds