Wall clock time and date at job start Sat Apr 11 2020 05:55:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30830 * 1 3 3 Si 1.86799 * 120.00334 * 2 1 4 4 H 1.48507 * 109.46792 * 270.00005 * 3 2 1 5 5 H 1.48501 * 109.47063 * 29.99691 * 3 2 1 6 6 H 1.48504 * 109.46955 * 150.00179 * 3 2 1 7 7 C 1.39944 * 119.99664 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99942 * 168.63558 * 7 2 1 9 9 C 1.41439 * 119.99940 * 348.63231 * 7 2 1 10 10 C 1.40783 * 120.17708 * 147.74496 * 9 7 2 11 11 C 1.37707 * 120.04084 * 180.02562 * 10 9 7 12 12 C 1.38376 * 120.41246 * 359.68228 * 11 10 9 13 13 C 1.39876 * 120.35651 * 0.60144 * 12 11 10 14 14 C 1.47880 * 120.02912 * 179.69711 * 13 12 11 15 15 O 1.21545 * 120.00561 * 179.72455 * 14 13 12 16 16 N 1.34785 * 119.99755 * 359.72164 * 14 13 12 17 17 C 1.46505 * 119.99981 * 173.96844 * 16 14 13 18 18 H 1.08996 * 109.46488 * 33.81115 * 17 16 14 19 19 C 1.52995 * 109.46906 * 273.80958 * 17 16 14 20 20 C 1.50707 * 109.46990 * 173.11061 * 19 17 16 21 21 O 1.20831 * 119.99686 * 354.16242 * 20 19 17 22 22 O 1.34230 * 120.00171 * 174.16159 * 20 19 17 23 23 C 1.50698 * 109.46797 * 153.80882 * 17 16 14 24 24 C 1.38652 * 120.79070 * 39.98126 * 23 17 16 25 25 C 1.38201 * 119.16291 * 179.97438 * 24 23 17 26 26 N 1.31864 * 120.76531 * 0.02562 * 25 24 23 27 27 C 1.31878 * 121.72491 * 0.02562 * 26 25 24 28 28 C 1.38196 * 120.76351 * 359.97438 * 27 26 25 29 29 C 1.39037 * 119.95144 * 359.41891 * 13 12 11 30 30 H 0.97003 * 119.99457 * 0.02562 * 1 2 3 31 31 H 1.07997 * 119.98103 * 0.02604 * 10 9 7 32 32 H 1.08003 * 119.79535 * 180.02562 * 11 10 9 33 33 H 1.08003 * 119.82013 * 180.29972 * 12 11 10 34 34 H 0.96996 * 119.99879 * 353.97238 * 16 14 13 35 35 H 1.08997 * 109.47684 * 293.10773 * 19 17 16 36 36 H 1.09001 * 109.47746 * 53.11202 * 19 17 16 37 37 H 0.96704 * 116.99751 * 180.02562 * 22 20 19 38 38 H 1.08007 * 120.41751 * 0.03669 * 24 23 17 39 39 H 1.08002 * 119.61515 * 180.29829 * 25 24 23 40 40 H 1.07994 * 119.61563 * 179.97438 * 27 26 25 41 41 H 1.08005 * 120.42078 * 180.02562 * 28 27 26 42 42 H 1.07995 * 120.20768 * 180.25219 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2424 1.6177 0.0000 4 1 2.4899 2.0463 -1.4002 5 1 1.4398 2.6527 0.7000 6 1 3.5400 1.4400 0.7000 7 6 2.0079 -1.2120 -0.0005 8 1 3.0721 -1.2211 -0.1848 9 6 1.3215 -2.4249 0.2403 10 6 1.7497 -3.6152 -0.3776 11 6 1.0789 -4.7945 -0.1415 12 6 -0.0137 -4.8211 0.7072 13 6 -0.4573 -3.6474 1.3254 14 6 -1.6299 -3.6829 2.2258 15 8 -2.0119 -2.6637 2.7667 16 7 -2.2751 -4.8455 2.4465 17 6 -3.3520 -4.9090 3.4378 18 1 -3.8901 -3.9612 3.4506 19 6 -2.7564 -5.1761 4.8215 20 6 -3.8405 -5.0737 5.8633 21 8 -4.9491 -4.7110 5.5479 22 8 -3.5746 -5.3854 7.1415 23 6 -4.3023 -6.0214 3.0765 24 6 -3.8278 -7.2309 2.5924 25 6 -4.7293 -8.2283 2.2721 26 7 -6.0257 -8.0393 2.4218 27 6 -6.5125 -6.9018 2.8784 28 6 -5.6718 -5.8593 3.2193 29 6 0.2085 -2.4483 1.0974 30 1 -0.4849 0.8401 -0.0004 31 1 2.6047 -3.6035 -1.0372 32 1 1.4111 -5.7054 -0.6173 33 1 -0.5298 -5.7522 0.8893 34 1 -2.0263 -5.6403 1.9491 35 1 -2.3242 -6.1765 4.8441 36 1 -1.9802 -4.4402 5.0313 37 1 -4.3020 -5.3046 7.7736 38 1 -2.7671 -7.3920 2.4681 39 1 -4.3675 -9.1750 1.8989 40 1 -7.5805 -6.7838 2.9871 41 1 -6.0765 -4.9303 3.5932 42 1 -0.1279 -1.5405 1.5758 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601077533.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:43 Heat of formation + Delta-G solvation = -73.978784 kcal Electronic energy + Delta-G solvation = -28446.293656 eV Core-core repulsion = 24355.766167 eV Total energy + Delta-G solvation = -4090.527489 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.126 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.01675 -40.00591 -39.28896 -37.26396 -36.47321 -35.59170 -33.76211 -32.38959 -31.32699 -30.99079 -29.87050 -29.52883 -25.88903 -25.22468 -23.75606 -22.90750 -22.29748 -21.08468 -20.54938 -19.75332 -18.36954 -18.11408 -17.40065 -16.79298 -16.11475 -16.06429 -15.85971 -15.69063 -15.35479 -14.96605 -14.72559 -14.51444 -14.05934 -13.81301 -13.71954 -13.47496 -13.25870 -13.22819 -12.75641 -12.63365 -12.56716 -11.92198 -11.73518 -11.71857 -11.47185 -11.20806 -11.13383 -10.83462 -10.79060 -10.54911 -10.12663 -9.85051 -9.75579 -9.65016 -9.29589 -9.27229 -9.20002 -8.99237 -7.73136 -7.53571 -6.79342 -4.48373 0.97664 1.05121 2.01479 2.05499 2.68757 2.75363 3.06674 3.07882 3.11638 3.49249 3.68625 3.73032 3.91246 4.20237 4.31957 4.54092 4.64586 4.65728 4.91799 4.97982 5.05759 5.15769 5.37786 5.42779 5.48787 5.51723 5.62530 5.77275 5.81706 5.97483 6.14064 6.16749 6.29785 6.55080 6.58818 6.62200 6.88233 6.92517 7.15456 7.29034 7.58196 7.62833 7.67413 7.79075 7.81318 7.94717 8.10111 8.43367 8.70949 8.75359 8.79172 10.17186 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.014364 B = 0.002852 C = 0.002614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1948.782155 B = 9816.146937 C =10708.643763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.794 5.794 2 C 0.073 3.927 3 Si 0.912 3.088 4 H -0.270 1.270 5 H -0.275 1.275 6 H -0.261 1.261 7 C -0.466 4.466 8 H 0.081 0.919 9 C 0.101 3.899 10 C -0.201 4.201 11 C -0.101 4.101 12 C -0.210 4.210 13 C -0.132 4.132 14 C 0.568 3.432 15 O -0.538 6.538 16 N -0.731 5.731 17 C 0.197 3.803 18 H 0.114 0.886 19 C -0.125 4.125 20 C 0.485 3.515 21 O -0.509 6.509 22 O -0.517 6.517 23 C -0.052 4.052 24 C -0.167 4.167 25 C 0.095 3.905 26 N -0.485 5.485 27 C 0.093 3.907 28 C -0.134 4.134 29 C -0.080 4.080 30 H 0.284 0.716 31 H 0.098 0.902 32 H 0.095 0.905 33 H 0.090 0.910 34 H 0.402 0.598 35 H 0.108 0.892 36 H 0.121 0.879 37 H 0.410 0.590 38 H 0.135 0.865 39 H 0.156 0.844 40 H 0.156 0.844 41 H 0.146 0.854 42 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.332 -12.230 8.695 16.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.419 5.419 2 C -0.145 4.145 3 Si 0.736 3.264 4 H -0.195 1.195 5 H -0.200 1.200 6 H -0.185 1.185 7 C -0.495 4.495 8 H 0.099 0.901 9 C 0.099 3.901 10 C -0.221 4.221 11 C -0.119 4.119 12 C -0.230 4.230 13 C -0.135 4.135 14 C 0.359 3.641 15 O -0.415 6.415 16 N -0.386 5.386 17 C 0.092 3.908 18 H 0.132 0.868 19 C -0.164 4.164 20 C 0.327 3.673 21 O -0.397 6.397 22 O -0.329 6.329 23 C -0.061 4.061 24 C -0.187 4.187 25 C -0.062 4.062 26 N -0.194 5.194 27 C -0.064 4.064 28 C -0.154 4.154 29 C -0.100 4.100 30 H 0.095 0.905 31 H 0.116 0.884 32 H 0.113 0.887 33 H 0.108 0.892 34 H 0.239 0.761 35 H 0.127 0.873 36 H 0.139 0.861 37 H 0.268 0.732 38 H 0.153 0.847 39 H 0.174 0.826 40 H 0.173 0.827 41 H 0.164 0.836 42 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -8.355 -11.915 8.491 16.848 hybrid contribution 0.556 1.059 0.323 1.239 sum -7.799 -10.856 8.814 16.012 Atomic orbital electron populations 1.69752 1.07414 1.29651 1.35097 1.25917 0.94858 1.01361 0.92405 0.86254 0.80424 0.80543 0.79179 1.19489 1.20035 1.18485 1.19540 0.96156 0.90307 1.43518 0.90130 1.17607 0.91229 0.92561 0.88739 1.21218 1.03245 0.93605 1.04056 1.20465 0.96185 0.96819 0.98442 1.20358 1.01554 0.95291 1.05793 1.19410 0.96689 0.95868 1.01581 1.18931 0.82716 0.81906 0.80524 1.90722 1.66645 1.33118 1.51038 1.46029 1.37086 1.13550 1.41943 1.19383 0.87019 0.98482 0.85956 0.86825 1.21828 0.96987 1.06494 0.91091 1.23243 0.89019 0.72716 0.82308 1.90696 1.24660 1.43103 1.81239 1.84541 1.47218 1.81274 1.19844 1.20306 0.94649 0.94555 0.96551 1.21995 1.01592 0.94040 1.01083 1.22705 0.88463 0.98820 0.96174 1.67660 1.15634 1.23699 1.12435 1.22779 1.00465 0.88508 0.94629 1.22201 0.93046 1.01422 0.98713 1.21591 0.96147 0.95492 0.96817 0.90534 0.88422 0.88725 0.89205 0.76090 0.87334 0.86075 0.73172 0.84719 0.82644 0.82721 0.83639 0.85187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.74 11.12 55.55 0.62 -20.13 16 2 C 0.07 1.80 5.22 -17.34 -0.09 1.71 16 3 Si 0.91 18.55 29.57 -169.99 -5.03 13.53 16 4 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 5 H -0.28 -5.55 7.11 56.52 0.40 -5.15 16 6 H -0.26 -5.22 7.11 56.52 0.40 -4.82 16 7 C -0.47 -11.92 9.04 -37.73 -0.34 -12.26 16 8 H 0.08 1.96 7.87 -52.49 -0.41 1.55 16 9 C 0.10 2.57 5.50 -106.87 -0.59 1.98 16 10 C -0.20 -4.56 9.78 -38.81 -0.38 -4.94 16 11 C -0.10 -2.02 10.01 -39.72 -0.40 -2.41 16 12 C -0.21 -4.07 9.54 -38.92 -0.37 -4.45 16 13 C -0.13 -2.91 5.87 -105.04 -0.62 -3.53 16 14 C 0.57 11.38 7.75 -12.31 -0.10 11.28 16 15 O -0.54 -12.50 15.94 5.33 0.08 -12.42 16 16 N -0.73 -10.83 4.97 -55.87 -0.28 -11.11 16 17 C 0.20 2.61 2.05 -69.08 -0.14 2.46 16 18 H 0.11 1.79 7.02 -51.93 -0.36 1.43 16 19 C -0.12 -1.40 5.56 -27.88 -0.16 -1.56 16 20 C 0.49 5.42 8.03 36.01 0.29 5.71 16 21 O -0.51 -6.64 13.67 -18.75 -0.26 -6.90 16 22 O -0.52 -4.51 13.42 -39.26 -0.53 -5.04 16 23 C -0.05 -0.61 4.52 -104.32 -0.47 -1.09 16 24 C -0.17 -1.70 9.16 -39.44 -0.36 -2.06 16 25 C 0.10 0.98 11.18 -17.55 -0.20 0.79 16 26 N -0.49 -5.82 10.36 -13.26 -0.14 -5.96 16 27 C 0.09 1.04 11.18 -17.55 -0.20 0.84 16 28 C -0.13 -1.58 8.28 -39.45 -0.33 -1.91 16 29 C -0.08 -2.04 8.18 -38.44 -0.31 -2.36 16 30 H 0.28 6.85 8.30 -40.82 -0.34 6.51 16 31 H 0.10 2.06 8.06 -52.49 -0.42 1.64 16 32 H 0.09 1.59 8.06 -52.48 -0.42 1.17 16 33 H 0.09 1.39 6.40 -52.48 -0.34 1.05 16 34 H 0.40 5.10 5.00 -40.82 -0.20 4.90 16 35 H 0.11 0.98 8.13 -51.93 -0.42 0.56 16 36 H 0.12 1.47 8.14 -51.93 -0.42 1.05 16 37 H 0.41 1.83 9.10 45.56 0.41 2.24 16 38 H 0.13 1.08 7.00 -52.48 -0.37 0.71 16 39 H 0.16 1.17 8.06 -52.49 -0.42 0.75 16 40 H 0.16 1.34 8.06 -52.49 -0.42 0.92 16 41 H 0.15 1.74 6.94 -52.48 -0.36 1.37 16 42 H 0.13 3.61 6.10 -52.49 -0.32 3.29 16 LS Contribution 363.47 15.07 5.48 5.48 Total: -1.00 -31.74 363.47 -8.42 -40.16 By element: Atomic # 1 Polarization: 17.80 SS G_CDS: -3.63 Total: 14.17 kcal Atomic # 6 Polarization: -7.04 SS G_CDS: -4.75 Total: -11.79 kcal Atomic # 7 Polarization: -37.39 SS G_CDS: 0.20 Total: -37.19 kcal Atomic # 8 Polarization: -23.66 SS G_CDS: -0.70 Total: -24.36 kcal Atomic # 14 Polarization: 18.55 SS G_CDS: -5.03 Total: 13.53 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -31.74 -8.42 -40.16 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601077533.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.816 kcal (2) G-P(sol) polarization free energy of solvation -31.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.163 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds