Wall clock time and date at job start Sat Apr 11 2020 05:55:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30830 * 1 3 3 Si 1.86799 * 120.00334 * 2 1 4 4 H 1.48507 * 109.46792 * 270.00005 * 3 2 1 5 5 H 1.48501 * 109.47063 * 29.99691 * 3 2 1 6 6 H 1.48504 * 109.46955 * 150.00179 * 3 2 1 7 7 C 1.39944 * 119.99664 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99942 * 168.63558 * 7 2 1 9 9 C 1.41439 * 119.99940 * 348.63231 * 7 2 1 10 10 C 1.40783 * 120.17708 * 147.74496 * 9 7 2 11 11 C 1.37707 * 120.04084 * 180.02562 * 10 9 7 12 12 C 1.38376 * 120.41246 * 359.68228 * 11 10 9 13 13 C 1.39876 * 120.35651 * 0.60144 * 12 11 10 14 14 C 1.47880 * 120.02912 * 179.69711 * 13 12 11 15 15 O 1.21545 * 120.00561 * 179.72455 * 14 13 12 16 16 N 1.34785 * 119.99755 * 359.72164 * 14 13 12 17 17 C 1.46505 * 119.99981 * 173.96844 * 16 14 13 18 18 H 1.08996 * 109.46488 * 33.81115 * 17 16 14 19 19 C 1.52995 * 109.46906 * 273.80958 * 17 16 14 20 20 C 1.50707 * 109.46990 * 173.11061 * 19 17 16 21 21 O 1.20831 * 119.99686 * 354.16242 * 20 19 17 22 22 O 1.34230 * 120.00171 * 174.16159 * 20 19 17 23 23 C 1.50698 * 109.46797 * 153.80882 * 17 16 14 24 24 C 1.38652 * 120.79070 * 39.98126 * 23 17 16 25 25 C 1.38201 * 119.16291 * 179.97438 * 24 23 17 26 26 N 1.31864 * 120.76531 * 0.02562 * 25 24 23 27 27 C 1.31878 * 121.72491 * 0.02562 * 26 25 24 28 28 C 1.38196 * 120.76351 * 359.97438 * 27 26 25 29 29 C 1.39037 * 119.95144 * 359.41891 * 13 12 11 30 30 H 0.97003 * 119.99457 * 0.02562 * 1 2 3 31 31 H 1.07997 * 119.98103 * 0.02604 * 10 9 7 32 32 H 1.08003 * 119.79535 * 180.02562 * 11 10 9 33 33 H 1.08003 * 119.82013 * 180.29972 * 12 11 10 34 34 H 0.96996 * 119.99879 * 353.97238 * 16 14 13 35 35 H 1.08997 * 109.47684 * 293.10773 * 19 17 16 36 36 H 1.09001 * 109.47746 * 53.11202 * 19 17 16 37 37 H 0.96704 * 116.99751 * 180.02562 * 22 20 19 38 38 H 1.08007 * 120.41751 * 0.03669 * 24 23 17 39 39 H 1.08002 * 119.61515 * 180.29829 * 25 24 23 40 40 H 1.07994 * 119.61563 * 179.97438 * 27 26 25 41 41 H 1.08005 * 120.42078 * 180.02562 * 28 27 26 42 42 H 1.07995 * 120.20768 * 180.25219 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2424 1.6177 0.0000 4 1 2.4899 2.0463 -1.4002 5 1 1.4398 2.6527 0.7000 6 1 3.5400 1.4400 0.7000 7 6 2.0079 -1.2120 -0.0005 8 1 3.0721 -1.2211 -0.1848 9 6 1.3215 -2.4249 0.2403 10 6 1.7497 -3.6152 -0.3776 11 6 1.0789 -4.7945 -0.1415 12 6 -0.0137 -4.8211 0.7072 13 6 -0.4573 -3.6474 1.3254 14 6 -1.6299 -3.6829 2.2258 15 8 -2.0119 -2.6637 2.7667 16 7 -2.2751 -4.8455 2.4465 17 6 -3.3520 -4.9090 3.4378 18 1 -3.8901 -3.9612 3.4506 19 6 -2.7564 -5.1761 4.8215 20 6 -3.8405 -5.0737 5.8633 21 8 -4.9491 -4.7110 5.5479 22 8 -3.5746 -5.3854 7.1415 23 6 -4.3023 -6.0214 3.0765 24 6 -3.8278 -7.2309 2.5924 25 6 -4.7293 -8.2283 2.2721 26 7 -6.0257 -8.0393 2.4218 27 6 -6.5125 -6.9018 2.8784 28 6 -5.6718 -5.8593 3.2193 29 6 0.2085 -2.4483 1.0974 30 1 -0.4849 0.8401 -0.0004 31 1 2.6047 -3.6035 -1.0372 32 1 1.4111 -5.7054 -0.6173 33 1 -0.5298 -5.7522 0.8893 34 1 -2.0263 -5.6403 1.9491 35 1 -2.3242 -6.1765 4.8441 36 1 -1.9802 -4.4402 5.0313 37 1 -4.3020 -5.3046 7.7736 38 1 -2.7671 -7.3920 2.4681 39 1 -4.3675 -9.1750 1.8989 40 1 -7.5805 -6.7838 2.9871 41 1 -6.0765 -4.9303 3.5932 42 1 -0.1279 -1.5405 1.5758 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601077533.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:43 Heat of formation + Delta-G solvation = -95.029957 kcal Electronic energy + Delta-G solvation = -28447.206503 eV Core-core repulsion = 24355.766167 eV Total energy + Delta-G solvation = -4091.440336 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.126 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.99617 -40.90453 -40.68547 -38.89982 -37.43354 -36.74843 -35.54414 -33.65553 -32.17957 -32.10116 -31.39894 -31.20986 -27.33188 -26.68011 -24.70981 -24.12847 -23.35189 -22.78758 -21.64107 -21.23476 -19.66769 -19.23737 -18.55733 -17.99209 -17.40410 -17.06054 -16.83202 -16.82542 -16.55698 -16.47932 -16.21991 -15.86793 -15.34204 -15.03360 -14.90707 -14.58539 -14.41858 -14.33589 -14.27718 -14.19426 -13.65631 -13.48771 -12.94085 -12.82219 -12.78717 -12.55984 -12.52793 -12.37448 -12.19384 -11.92247 -11.72000 -11.48499 -11.09347 -10.96969 -10.67381 -10.53246 -10.29869 -10.07641 -9.46191 -9.31843 -8.60945 -6.39262 0.13356 0.20560 0.34616 1.01916 1.14469 1.37402 1.45914 1.51846 1.72747 2.05231 2.21260 2.39404 2.81430 2.83833 3.23974 3.57250 3.61017 3.68824 3.79538 3.98023 4.10684 4.16393 4.22839 4.31894 4.42886 4.54830 4.58354 4.62703 4.68254 4.88294 4.91507 4.96671 5.10390 5.17407 5.18624 5.31650 5.40660 5.52839 5.56635 5.74609 5.85382 5.90955 6.05469 6.29939 6.45882 6.63979 6.91563 6.93481 6.95069 7.00029 7.20785 8.37239 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.014364 B = 0.002852 C = 0.002614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1948.782155 B = 9816.146937 C =10708.643763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.838 5.838 2 C 0.028 3.972 3 Si 0.981 3.019 4 H -0.260 1.260 5 H -0.275 1.275 6 H -0.255 1.255 7 C -0.503 4.503 8 H 0.082 0.918 9 C 0.068 3.932 10 C -0.205 4.205 11 C -0.099 4.099 12 C -0.183 4.183 13 C -0.142 4.142 14 C 0.569 3.431 15 O -0.580 6.580 16 N -0.705 5.705 17 C 0.202 3.798 18 H 0.081 0.919 19 C -0.123 4.123 20 C 0.489 3.511 21 O -0.533 6.533 22 O -0.511 6.511 23 C -0.061 4.061 24 C -0.162 4.162 25 C 0.094 3.906 26 N -0.504 5.504 27 C 0.088 3.912 28 C -0.145 4.145 29 C -0.117 4.117 30 H 0.283 0.717 31 H 0.109 0.891 32 H 0.142 0.858 33 H 0.143 0.857 34 H 0.416 0.584 35 H 0.140 0.860 36 H 0.110 0.890 37 H 0.429 0.571 38 H 0.164 0.836 39 H 0.187 0.813 40 H 0.172 0.828 41 H 0.135 0.865 42 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.832 -15.822 8.622 19.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.465 5.465 2 C -0.185 4.185 3 Si 0.802 3.198 4 H -0.185 1.185 5 H -0.200 1.200 6 H -0.179 1.179 7 C -0.534 4.534 8 H 0.100 0.900 9 C 0.066 3.934 10 C -0.225 4.225 11 C -0.117 4.117 12 C -0.202 4.202 13 C -0.145 4.145 14 C 0.359 3.641 15 O -0.461 6.461 16 N -0.359 5.359 17 C 0.096 3.904 18 H 0.099 0.901 19 C -0.161 4.161 20 C 0.331 3.669 21 O -0.423 6.423 22 O -0.325 6.325 23 C -0.070 4.070 24 C -0.181 4.181 25 C -0.062 4.062 26 N -0.213 5.213 27 C -0.068 4.068 28 C -0.166 4.166 29 C -0.138 4.138 30 H 0.094 0.906 31 H 0.127 0.873 32 H 0.160 0.840 33 H 0.161 0.839 34 H 0.256 0.744 35 H 0.158 0.842 36 H 0.128 0.872 37 H 0.291 0.709 38 H 0.181 0.819 39 H 0.204 0.796 40 H 0.189 0.811 41 H 0.153 0.847 42 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -7.861 -15.575 8.436 19.379 hybrid contribution 0.320 1.895 0.406 1.965 sum -7.541 -13.680 8.842 17.949 Atomic orbital electron populations 1.69864 1.08998 1.30228 1.37429 1.26761 0.95482 1.04651 0.91581 0.85217 0.79015 0.76086 0.79491 1.18464 1.20000 1.17851 1.19803 0.96415 0.91491 1.45664 0.90007 1.17927 0.91966 0.93875 0.89665 1.21525 1.03614 0.93766 1.03588 1.20973 0.95431 0.97452 0.97855 1.20934 1.00471 0.96003 1.02838 1.19701 0.97034 0.95843 1.01913 1.18730 0.82602 0.82697 0.80064 1.90709 1.67714 1.35057 1.52601 1.45699 1.36263 1.12245 1.41718 1.19306 0.86496 0.97900 0.86677 0.90098 1.21745 0.96624 1.07855 0.89912 1.23148 0.88465 0.72250 0.83009 1.90704 1.25607 1.44217 1.81778 1.84486 1.48200 1.80589 1.19181 1.20207 0.94196 0.94834 0.97740 1.22251 1.03088 0.92886 0.99921 1.23255 0.87875 0.99939 0.95173 1.67719 1.16805 1.23857 1.12958 1.23039 1.01339 0.88149 0.94276 1.22187 0.93490 1.01442 0.99448 1.21361 0.98017 0.95741 0.98638 0.90648 0.87334 0.84025 0.83929 0.74361 0.84245 0.87216 0.70914 0.81884 0.79602 0.81050 0.84714 0.89031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -46.74 11.12 21.83 0.24 -46.50 16 2 C 0.03 1.48 5.22 85.26 0.44 1.92 16 3 Si 0.98 39.71 29.57 68.60 2.03 41.74 16 4 H -0.26 -10.01 7.11 99.48 0.71 -9.30 16 5 H -0.28 -10.95 7.11 99.48 0.71 -10.24 16 6 H -0.25 -9.91 7.11 99.48 0.71 -9.20 16 7 C -0.50 -27.00 9.04 23.47 0.21 -26.79 16 8 H 0.08 4.15 7.87 -2.91 -0.02 4.12 16 9 C 0.07 3.56 5.50 -21.32 -0.12 3.44 16 10 C -0.21 -9.09 9.78 22.77 0.22 -8.87 16 11 C -0.10 -3.58 10.01 22.18 0.22 -3.36 16 12 C -0.18 -6.41 9.54 22.70 0.22 -6.19 16 13 C -0.14 -6.20 5.87 -20.14 -0.12 -6.32 16 14 C 0.57 22.83 7.75 86.80 0.67 23.50 16 15 O -0.58 -28.34 15.94 -3.86 -0.06 -28.40 16 16 N -0.70 -19.50 4.97 -448.94 -2.23 -21.73 16 17 C 0.20 5.14 2.05 44.24 0.09 5.23 16 18 H 0.08 2.66 7.02 -2.39 -0.02 2.64 16 19 C -0.12 -2.57 5.56 29.85 0.17 -2.41 16 20 C 0.49 10.42 8.03 71.24 0.57 11.00 16 21 O -0.53 -13.90 13.67 21.95 0.30 -13.60 16 22 O -0.51 -7.98 13.42 -51.42 -0.69 -8.67 16 23 C -0.06 -1.33 4.52 -19.67 -0.09 -1.42 16 24 C -0.16 -2.67 9.16 22.36 0.20 -2.46 16 25 C 0.09 1.59 11.18 84.68 0.95 2.54 16 26 N -0.50 -10.82 10.36 -195.85 -2.03 -12.85 16 27 C 0.09 1.84 11.18 84.68 0.95 2.79 16 28 C -0.15 -3.34 8.28 22.36 0.19 -3.16 16 29 C -0.12 -6.23 8.18 23.01 0.19 -6.04 16 30 H 0.28 14.68 8.30 -92.71 -0.77 13.91 16 31 H 0.11 4.46 8.06 -2.91 -0.02 4.44 16 32 H 0.14 3.85 8.06 -2.91 -0.02 3.83 16 33 H 0.14 3.46 6.40 -2.91 -0.02 3.44 16 34 H 0.42 8.78 5.00 -92.71 -0.46 8.32 16 35 H 0.14 2.02 8.13 -2.39 -0.02 2.01 16 36 H 0.11 2.62 8.14 -2.39 -0.02 2.60 16 37 H 0.43 3.04 9.10 -74.05 -0.67 2.36 16 38 H 0.16 1.68 7.00 -2.91 -0.02 1.66 16 39 H 0.19 1.89 8.06 -2.91 -0.02 1.87 16 40 H 0.17 2.79 8.06 -2.91 -0.02 2.76 16 41 H 0.13 3.33 6.94 -2.91 -0.02 3.31 16 42 H 0.09 5.52 6.10 -2.91 -0.02 5.51 16 Total: -1.00 -75.08 363.47 2.49 -72.59 By element: Atomic # 1 Polarization: 34.06 SS G_CDS: -0.04 Total: 34.02 kcal Atomic # 6 Polarization: -21.56 SS G_CDS: 4.97 Total: -16.59 kcal Atomic # 7 Polarization: -77.07 SS G_CDS: -4.02 Total: -81.08 kcal Atomic # 8 Polarization: -50.22 SS G_CDS: -0.45 Total: -50.67 kcal Atomic # 14 Polarization: 39.71 SS G_CDS: 2.03 Total: 41.74 kcal Total: -75.08 2.49 -72.59 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601077533.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.444 kcal (2) G-P(sol) polarization free energy of solvation -75.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.586 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds