Wall clock time and date at job start Sat Apr 11 2020 05:55:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30828 * 1 3 3 Si 1.86794 * 119.99735 * 2 1 4 4 H 1.48501 * 109.46971 * 269.99354 * 3 2 1 5 5 H 1.48500 * 109.47327 * 29.99204 * 3 2 1 6 6 H 1.48500 * 109.47445 * 149.99862 * 3 2 1 7 7 C 1.39935 * 120.00060 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00093 * 197.89148 * 7 2 1 9 9 C 1.41438 * 120.00143 * 17.88529 * 7 2 1 10 10 C 1.40786 * 120.17728 * 204.44238 * 9 7 2 11 11 C 1.37714 * 120.03897 * 180.02562 * 10 9 7 12 12 C 1.38367 * 120.40973 * 359.67894 * 11 10 9 13 13 C 1.39876 * 120.35922 * 0.60328 * 12 11 10 14 14 C 1.47890 * 120.02450 * 179.69346 * 13 12 11 15 15 O 1.21558 * 119.99880 * 179.72070 * 14 13 12 16 16 N 1.34771 * 120.00522 * 359.72929 * 14 13 12 17 17 C 1.46497 * 120.00647 * 180.02562 * 16 14 13 18 18 H 1.08993 * 109.46895 * 34.99089 * 17 16 14 19 19 C 1.52991 * 109.47405 * 154.99656 * 17 16 14 20 20 C 1.50705 * 109.47242 * 295.00037 * 19 17 16 21 21 C 1.38648 * 120.78483 * 269.72188 * 20 19 17 22 22 C 1.38205 * 119.15957 * 179.79734 * 21 20 19 23 23 N 1.31875 * 120.76165 * 0.48529 * 22 21 20 24 24 C 1.31863 * 121.72767 * 359.74442 * 23 22 21 25 25 C 1.38206 * 120.76385 * 0.02562 * 24 23 22 26 26 C 1.50698 * 109.46688 * 274.99735 * 17 16 14 27 27 O 1.20827 * 120.00110 * 359.97438 * 26 17 16 28 28 O 1.34229 * 120.00084 * 179.97438 * 26 17 16 29 29 C 1.39027 * 119.95053 * 359.41934 * 13 12 11 30 30 H 0.96993 * 120.00417 * 0.02562 * 1 2 3 31 31 H 1.07997 * 119.98148 * 0.02562 * 10 9 7 32 32 H 1.08003 * 119.79096 * 179.97438 * 11 10 9 33 33 H 1.08007 * 119.82058 * 180.29354 * 12 11 10 34 34 H 0.97010 * 119.99332 * 359.97438 * 16 14 13 35 35 H 1.08998 * 109.47534 * 54.99732 * 19 17 16 36 36 H 1.08995 * 109.47471 * 174.99865 * 19 17 16 37 37 H 1.07998 * 120.42333 * 359.97438 * 21 20 19 38 38 H 1.08004 * 119.62222 * 180.20629 * 22 21 20 39 39 H 1.08003 * 119.61707 * 180.02562 * 24 23 22 40 40 H 1.08003 * 120.41721 * 179.97438 * 25 24 23 41 41 H 0.96695 * 117.00596 * 179.97438 * 28 26 17 42 42 H 1.07999 * 120.20428 * 180.25373 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 2.4898 2.0463 -1.4001 5 1 1.4395 2.6527 0.6999 6 1 3.5397 1.4403 0.7001 7 6 2.0080 -1.2119 0.0005 8 1 3.0488 -1.2344 0.2879 9 6 1.3521 -2.4073 -0.3751 10 6 1.8263 -3.6499 0.0866 11 6 1.1859 -4.8122 -0.2813 12 6 0.0709 -4.7686 -1.0995 13 6 -0.4113 -3.5438 -1.5728 14 6 -1.5995 -3.5064 -2.4524 15 8 -2.0212 -2.4414 -2.8593 16 7 -2.2151 -4.6530 -2.8028 17 6 -3.3918 -4.6160 -3.6746 18 1 -3.2812 -3.8103 -4.4002 19 6 -3.5236 -5.9507 -4.4106 20 6 -2.3477 -6.1326 -5.3355 21 6 -2.3994 -5.6824 -6.6459 22 6 -1.3000 -5.8629 -7.4637 23 7 -0.2157 -6.4635 -7.0135 24 6 -0.1331 -6.9084 -5.7749 25 6 -1.1909 -6.7592 -4.8981 26 6 -4.6257 -4.3769 -2.8430 27 8 -4.5317 -4.2510 -1.6450 28 8 -5.8290 -4.3040 -3.4331 29 6 0.2240 -2.3613 -1.2110 30 1 -0.4850 0.8399 -0.0004 31 1 2.6929 -3.6916 0.7298 32 1 1.5533 -5.7633 0.0749 33 1 -0.4269 -5.6857 -1.3783 34 1 -1.8784 -5.5029 -2.4782 35 1 -3.5450 -6.7647 -3.6859 36 1 -4.4463 -5.9564 -4.9906 37 1 -3.2863 -5.1942 -7.0219 38 1 -1.3309 -5.5121 -8.4848 39 1 0.7718 -7.3949 -5.4418 40 1 -1.1173 -7.1261 -3.8850 41 1 -6.5913 -4.1498 -2.8585 42 1 -0.1473 -1.4130 -1.5708 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601077654.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:46 Heat of formation + Delta-G solvation = -74.767568 kcal Electronic energy + Delta-G solvation = -28797.032026 eV Core-core repulsion = 24706.470333 eV Total energy + Delta-G solvation = -4090.561693 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.126 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.84418 -40.07173 -39.05112 -37.14446 -36.13989 -35.76159 -33.80355 -33.08270 -31.33624 -30.76596 -29.52493 -29.27009 -25.84227 -25.27399 -23.65689 -23.00560 -22.14661 -21.17017 -20.74394 -19.74778 -18.16835 -17.86925 -17.23238 -16.61656 -16.53327 -16.20144 -15.84049 -15.70958 -15.32747 -15.07885 -14.67332 -14.04438 -13.97972 -13.86318 -13.83310 -13.39495 -13.29207 -12.87317 -12.70647 -12.62481 -12.53683 -12.14748 -11.68047 -11.59381 -11.52314 -11.19799 -11.11640 -10.77124 -10.69553 -10.51827 -10.07828 -9.76034 -9.71638 -9.61266 -9.28443 -9.23885 -9.19016 -9.00695 -7.67262 -7.54481 -6.81415 -4.43152 1.01596 1.04497 2.10490 2.18909 2.75374 2.81631 3.07068 3.10383 3.14558 3.42487 3.66921 3.85476 3.91083 4.29491 4.37430 4.48405 4.50254 4.61712 4.87475 4.95539 5.01333 5.20954 5.22485 5.38880 5.53380 5.58508 5.63120 5.70552 5.82628 6.03694 6.10863 6.23124 6.42609 6.51345 6.56172 6.68601 6.95152 6.98109 7.18655 7.34853 7.62446 7.69454 7.84355 7.85945 7.86476 7.97527 8.15077 8.47907 8.75063 8.79883 8.82265 10.13175 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.010909 B = 0.003462 C = 0.003083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2566.154476 B = 8086.877152 C = 9081.152175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.782 5.782 2 C 0.073 3.927 3 Si 0.911 3.089 4 H -0.266 1.266 5 H -0.277 1.277 6 H -0.261 1.261 7 C -0.459 4.459 8 H 0.082 0.918 9 C 0.099 3.901 10 C -0.210 4.210 11 C -0.096 4.096 12 C -0.216 4.216 13 C -0.125 4.125 14 C 0.574 3.426 15 O -0.540 6.540 16 N -0.715 5.715 17 C 0.167 3.833 18 H 0.127 0.873 19 C -0.083 4.083 20 C -0.039 4.039 21 C -0.167 4.167 22 C 0.099 3.901 23 N -0.487 5.487 24 C 0.104 3.896 25 C -0.159 4.159 26 C 0.461 3.539 27 O -0.491 6.491 28 O -0.519 6.519 29 C -0.091 4.091 30 H 0.285 0.715 31 H 0.096 0.904 32 H 0.094 0.906 33 H 0.088 0.912 34 H 0.404 0.596 35 H 0.090 0.910 36 H 0.107 0.893 37 H 0.136 0.864 38 H 0.155 0.845 39 H 0.157 0.843 40 H 0.134 0.866 41 H 0.408 0.592 42 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.374 -12.154 -10.640 18.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.406 5.406 2 C -0.146 4.146 3 Si 0.735 3.265 4 H -0.191 1.191 5 H -0.202 1.202 6 H -0.185 1.185 7 C -0.488 4.488 8 H 0.100 0.900 9 C 0.097 3.903 10 C -0.230 4.230 11 C -0.115 4.115 12 C -0.236 4.236 13 C -0.128 4.128 14 C 0.366 3.634 15 O -0.417 6.417 16 N -0.370 5.370 17 C 0.059 3.941 18 H 0.145 0.855 19 C -0.121 4.121 20 C -0.047 4.047 21 C -0.187 4.187 22 C -0.058 4.058 23 N -0.196 5.196 24 C -0.052 4.052 25 C -0.179 4.179 26 C 0.300 3.700 27 O -0.376 6.376 28 O -0.331 6.331 29 C -0.111 4.111 30 H 0.096 0.904 31 H 0.114 0.886 32 H 0.112 0.888 33 H 0.106 0.894 34 H 0.241 0.759 35 H 0.108 0.892 36 H 0.125 0.875 37 H 0.154 0.846 38 H 0.172 0.828 39 H 0.174 0.826 40 H 0.152 0.848 41 H 0.267 0.733 42 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -7.803 -11.346 -11.375 17.861 hybrid contribution -0.885 0.617 1.362 1.737 sum -8.688 -10.730 -10.013 17.055 Atomic orbital electron populations 1.69794 1.07593 1.29826 1.33389 1.25975 0.94759 1.01593 0.92301 0.86266 0.80380 0.80401 0.79464 1.19123 1.20209 1.18523 1.19609 0.98277 0.91042 1.39899 0.89991 1.17591 0.91127 0.92509 0.89120 1.21103 1.03518 0.92729 1.05671 1.20419 0.95937 0.96761 0.98343 1.20276 1.01211 0.94413 1.07711 1.19337 0.96214 0.95486 1.01774 1.18918 0.83083 0.82420 0.78977 1.90704 1.66455 1.29732 1.54855 1.45758 1.28160 1.10707 1.52424 1.20211 0.82044 1.00467 0.91416 0.85539 1.20855 0.97663 0.95712 0.97882 1.20013 0.95023 0.95536 0.94161 1.22056 1.00828 1.01605 0.94179 1.22754 0.88458 0.94565 1.00022 1.67677 1.26178 1.09593 1.16113 1.22784 0.98041 0.95578 0.88832 1.22063 0.93956 1.00575 1.01283 1.24149 0.84869 0.72998 0.88008 1.90782 1.86352 1.44101 1.16366 1.84496 1.17711 1.84538 1.46384 1.21634 0.96440 0.96365 0.96653 0.90405 0.88563 0.88833 0.89423 0.75852 0.89196 0.87500 0.84590 0.82791 0.82572 0.84775 0.73266 0.84871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -20.97 10.96 55.55 0.61 -20.37 16 2 C 0.07 1.86 5.14 -17.34 -0.09 1.77 16 3 Si 0.91 18.91 29.59 -169.99 -5.03 13.88 16 4 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 5 H -0.28 -5.64 7.11 56.52 0.40 -5.24 16 6 H -0.26 -5.28 7.11 56.52 0.40 -4.88 16 7 C -0.46 -12.11 9.05 -37.73 -0.34 -12.45 16 8 H 0.08 2.05 7.91 -52.49 -0.42 1.63 16 9 C 0.10 2.62 5.57 -106.87 -0.60 2.03 16 10 C -0.21 -4.97 9.78 -38.81 -0.38 -5.35 16 11 C -0.10 -2.03 10.01 -39.73 -0.40 -2.42 16 12 C -0.22 -4.47 9.55 -38.92 -0.37 -4.84 16 13 C -0.12 -2.95 5.87 -105.04 -0.62 -3.56 16 14 C 0.57 12.47 7.60 -12.31 -0.09 12.38 16 15 O -0.54 -13.44 16.00 5.31 0.09 -13.36 16 16 N -0.72 -11.40 4.03 -55.87 -0.23 -11.62 16 17 C 0.17 2.16 2.47 -69.09 -0.17 1.99 16 18 H 0.13 1.76 7.58 -51.93 -0.39 1.37 16 19 C -0.08 -0.72 4.90 -27.89 -0.14 -0.85 16 20 C -0.04 -0.38 4.98 -104.32 -0.52 -0.90 16 21 C -0.17 -1.56 9.82 -39.44 -0.39 -1.95 16 22 C 0.10 1.02 11.18 -17.55 -0.20 0.83 16 23 N -0.49 -6.01 10.36 -13.25 -0.14 -6.15 16 24 C 0.10 1.16 11.18 -17.55 -0.20 0.96 16 25 C -0.16 -1.61 9.26 -39.44 -0.37 -1.98 16 26 C 0.46 6.44 7.66 36.00 0.28 6.71 16 27 O -0.49 -9.04 17.08 -18.75 -0.32 -9.36 16 28 O -0.52 -5.13 13.23 -39.25 -0.52 -5.65 16 29 C -0.09 -2.44 8.24 -38.44 -0.32 -2.75 16 30 H 0.28 7.04 8.30 -40.82 -0.34 6.70 16 31 H 0.10 2.11 8.06 -52.49 -0.42 1.69 16 32 H 0.09 1.65 8.06 -52.48 -0.42 1.23 16 33 H 0.09 1.46 6.38 -52.48 -0.33 1.13 16 34 H 0.40 5.55 5.94 -40.82 -0.24 5.30 16 35 H 0.09 0.65 8.10 -51.93 -0.42 0.23 16 36 H 0.11 0.70 7.95 -51.93 -0.41 0.29 16 37 H 0.14 0.94 8.06 -52.49 -0.42 0.52 16 38 H 0.15 1.19 8.06 -52.48 -0.42 0.77 16 39 H 0.16 1.42 8.06 -52.48 -0.42 0.99 16 40 H 0.13 1.12 7.65 -52.48 -0.40 0.72 16 41 H 0.41 2.48 9.10 45.56 0.41 2.90 16 42 H 0.13 3.88 5.74 -52.49 -0.30 3.58 16 LS Contribution 369.77 15.07 5.57 5.57 Total: -1.00 -34.98 369.77 -8.62 -43.60 By element: Atomic # 1 Polarization: 17.59 SS G_CDS: -3.76 Total: 13.84 kcal Atomic # 6 Polarization: -5.49 SS G_CDS: -4.90 Total: -10.39 kcal Atomic # 7 Polarization: -38.38 SS G_CDS: 0.25 Total: -38.13 kcal Atomic # 8 Polarization: -27.61 SS G_CDS: -0.75 Total: -28.36 kcal Atomic # 14 Polarization: 18.91 SS G_CDS: -5.03 Total: 13.88 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -34.98 -8.62 -43.60 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601077654.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.167 kcal (2) G-P(sol) polarization free energy of solvation -34.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.600 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds