Wall clock time and date at job start Sat Apr 11 2020 05:55:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30828 * 1 3 3 Si 1.86794 * 119.99735 * 2 1 4 4 H 1.48501 * 109.46971 * 269.99354 * 3 2 1 5 5 H 1.48500 * 109.47327 * 29.99204 * 3 2 1 6 6 H 1.48500 * 109.47445 * 149.99862 * 3 2 1 7 7 C 1.39935 * 120.00060 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00093 * 197.89148 * 7 2 1 9 9 C 1.41438 * 120.00143 * 17.88529 * 7 2 1 10 10 C 1.40786 * 120.17728 * 204.44238 * 9 7 2 11 11 C 1.37714 * 120.03897 * 180.02562 * 10 9 7 12 12 C 1.38367 * 120.40973 * 359.67894 * 11 10 9 13 13 C 1.39876 * 120.35922 * 0.60328 * 12 11 10 14 14 C 1.47890 * 120.02450 * 179.69346 * 13 12 11 15 15 O 1.21558 * 119.99880 * 179.72070 * 14 13 12 16 16 N 1.34771 * 120.00522 * 359.72929 * 14 13 12 17 17 C 1.46497 * 120.00647 * 180.02562 * 16 14 13 18 18 H 1.08993 * 109.46895 * 34.99089 * 17 16 14 19 19 C 1.52991 * 109.47405 * 154.99656 * 17 16 14 20 20 C 1.50705 * 109.47242 * 295.00037 * 19 17 16 21 21 C 1.38648 * 120.78483 * 269.72188 * 20 19 17 22 22 C 1.38205 * 119.15957 * 179.79734 * 21 20 19 23 23 N 1.31875 * 120.76165 * 0.48529 * 22 21 20 24 24 C 1.31863 * 121.72767 * 359.74442 * 23 22 21 25 25 C 1.38206 * 120.76385 * 0.02562 * 24 23 22 26 26 C 1.50698 * 109.46688 * 274.99735 * 17 16 14 27 27 O 1.20827 * 120.00110 * 359.97438 * 26 17 16 28 28 O 1.34229 * 120.00084 * 179.97438 * 26 17 16 29 29 C 1.39027 * 119.95053 * 359.41934 * 13 12 11 30 30 H 0.96993 * 120.00417 * 0.02562 * 1 2 3 31 31 H 1.07997 * 119.98148 * 0.02562 * 10 9 7 32 32 H 1.08003 * 119.79096 * 179.97438 * 11 10 9 33 33 H 1.08007 * 119.82058 * 180.29354 * 12 11 10 34 34 H 0.97010 * 119.99332 * 359.97438 * 16 14 13 35 35 H 1.08998 * 109.47534 * 54.99732 * 19 17 16 36 36 H 1.08995 * 109.47471 * 174.99865 * 19 17 16 37 37 H 1.07998 * 120.42333 * 359.97438 * 21 20 19 38 38 H 1.08004 * 119.62222 * 180.20629 * 22 21 20 39 39 H 1.08003 * 119.61707 * 180.02562 * 24 23 22 40 40 H 1.08003 * 120.41721 * 179.97438 * 25 24 23 41 41 H 0.96695 * 117.00596 * 179.97438 * 28 26 17 42 42 H 1.07999 * 120.20428 * 180.25373 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 2.4898 2.0463 -1.4001 5 1 1.4395 2.6527 0.6999 6 1 3.5397 1.4403 0.7001 7 6 2.0080 -1.2119 0.0005 8 1 3.0488 -1.2344 0.2879 9 6 1.3521 -2.4073 -0.3751 10 6 1.8263 -3.6499 0.0866 11 6 1.1859 -4.8122 -0.2813 12 6 0.0709 -4.7686 -1.0995 13 6 -0.4113 -3.5438 -1.5728 14 6 -1.5995 -3.5064 -2.4524 15 8 -2.0212 -2.4414 -2.8593 16 7 -2.2151 -4.6530 -2.8028 17 6 -3.3918 -4.6160 -3.6746 18 1 -3.2812 -3.8103 -4.4002 19 6 -3.5236 -5.9507 -4.4106 20 6 -2.3477 -6.1326 -5.3355 21 6 -2.3994 -5.6824 -6.6459 22 6 -1.3000 -5.8629 -7.4637 23 7 -0.2157 -6.4635 -7.0135 24 6 -0.1331 -6.9084 -5.7749 25 6 -1.1909 -6.7592 -4.8981 26 6 -4.6257 -4.3769 -2.8430 27 8 -4.5317 -4.2510 -1.6450 28 8 -5.8290 -4.3040 -3.4331 29 6 0.2240 -2.3613 -1.2110 30 1 -0.4850 0.8399 -0.0004 31 1 2.6929 -3.6916 0.7298 32 1 1.5533 -5.7633 0.0749 33 1 -0.4269 -5.6857 -1.3783 34 1 -1.8784 -5.5029 -2.4782 35 1 -3.5450 -6.7647 -3.6859 36 1 -4.4463 -5.9564 -4.9906 37 1 -3.2863 -5.1942 -7.0219 38 1 -1.3309 -5.5121 -8.4848 39 1 0.7718 -7.3949 -5.4418 40 1 -1.1173 -7.1261 -3.8850 41 1 -6.5913 -4.1498 -2.8585 42 1 -0.1473 -1.4130 -1.5708 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601077654.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:45 Heat of formation + Delta-G solvation = -98.686485 kcal Electronic energy + Delta-G solvation = -28798.069228 eV Core-core repulsion = 24706.470333 eV Total energy + Delta-G solvation = -4091.598895 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.126 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.95812 -40.91345 -40.57716 -38.86628 -37.24055 -36.90507 -35.63595 -34.25481 -32.30569 -32.06026 -31.31681 -30.60772 -27.26720 -26.66452 -24.70265 -24.29484 -23.00406 -22.86203 -22.00372 -21.35485 -19.63072 -19.16947 -18.39205 -17.79136 -17.62460 -17.38717 -17.06161 -16.76318 -16.53143 -16.40053 -16.36068 -15.56160 -15.46885 -15.09841 -14.82070 -14.55155 -14.49115 -14.34949 -14.29001 -13.70788 -13.50145 -13.48970 -12.99674 -12.97768 -12.83457 -12.59615 -12.54213 -12.29813 -12.19044 -11.92666 -11.91401 -11.52145 -11.10205 -10.92225 -10.61007 -10.44736 -10.33165 -10.00597 -9.50909 -9.39809 -8.68198 -6.39921 0.27452 0.27923 0.32973 0.99640 1.09754 1.34487 1.46016 1.49080 1.64440 2.05938 2.17405 2.30824 2.77404 2.89945 3.53990 3.61060 3.67907 3.68910 3.80101 3.94467 4.10571 4.23453 4.27034 4.32456 4.41616 4.54408 4.57982 4.70886 4.85294 4.88757 4.96073 5.06804 5.08664 5.15727 5.18271 5.29760 5.40436 5.49881 5.53922 5.83089 5.84744 5.90166 6.03628 6.26344 6.39653 6.61225 6.86274 6.89427 6.93222 7.10074 7.16992 8.28485 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.010909 B = 0.003462 C = 0.003083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2566.154476 B = 8086.877152 C = 9081.152175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.827 5.827 2 C 0.030 3.970 3 Si 0.982 3.018 4 H -0.266 1.266 5 H -0.270 1.270 6 H -0.249 1.249 7 C -0.498 4.498 8 H 0.085 0.915 9 C 0.067 3.933 10 C -0.215 4.215 11 C -0.094 4.094 12 C -0.193 4.193 13 C -0.139 4.139 14 C 0.571 3.429 15 O -0.583 6.583 16 N -0.693 5.693 17 C 0.163 3.837 18 H 0.117 0.883 19 C -0.069 4.069 20 C -0.048 4.048 21 C -0.167 4.167 22 C 0.081 3.919 23 N -0.518 5.518 24 C 0.083 3.917 25 C -0.165 4.165 26 C 0.470 3.530 27 O -0.542 6.542 28 O -0.500 6.500 29 C -0.132 4.132 30 H 0.286 0.714 31 H 0.109 0.891 32 H 0.141 0.859 33 H 0.138 0.862 34 H 0.417 0.583 35 H 0.112 0.888 36 H 0.136 0.864 37 H 0.162 0.838 38 H 0.172 0.828 39 H 0.168 0.832 40 H 0.154 0.846 41 H 0.428 0.572 42 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.221 -14.739 -11.141 20.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.453 5.453 2 C -0.185 4.185 3 Si 0.803 3.197 4 H -0.191 1.191 5 H -0.195 1.195 6 H -0.172 1.172 7 C -0.528 4.528 8 H 0.103 0.897 9 C 0.065 3.935 10 C -0.235 4.235 11 C -0.112 4.112 12 C -0.213 4.213 13 C -0.142 4.142 14 C 0.362 3.638 15 O -0.464 6.464 16 N -0.348 5.348 17 C 0.055 3.945 18 H 0.135 0.865 19 C -0.106 4.106 20 C -0.057 4.057 21 C -0.186 4.186 22 C -0.075 4.075 23 N -0.228 5.228 24 C -0.073 4.073 25 C -0.184 4.184 26 C 0.311 3.689 27 O -0.432 6.432 28 O -0.313 6.313 29 C -0.153 4.153 30 H 0.096 0.904 31 H 0.127 0.873 32 H 0.159 0.841 33 H 0.156 0.844 34 H 0.257 0.743 35 H 0.130 0.870 36 H 0.154 0.846 37 H 0.179 0.821 38 H 0.190 0.810 39 H 0.185 0.815 40 H 0.172 0.828 41 H 0.291 0.709 42 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -8.683 -14.004 -11.897 20.324 hybrid contribution -0.743 1.183 1.416 1.989 sum -9.426 -12.821 -10.481 19.055 Atomic orbital electron populations 1.69904 1.09316 1.30548 1.35482 1.26860 0.95354 1.05008 0.91297 0.85197 0.79314 0.75799 0.79407 1.19089 1.19461 1.17224 1.19886 0.98644 0.92245 1.41983 0.89724 1.17936 0.91737 0.93997 0.89842 1.21428 1.03904 0.92773 1.05400 1.20932 0.95245 0.97758 0.97268 1.20834 1.00322 0.94975 1.05154 1.19703 0.96799 0.95709 1.01976 1.18744 0.82963 0.83327 0.78749 1.90676 1.67544 1.31693 1.56503 1.45463 1.28438 1.09317 1.51567 1.20492 0.80479 1.02959 0.90571 0.86498 1.20882 0.98407 0.93385 0.97902 1.20216 0.95328 0.95553 0.94567 1.22381 1.01324 1.00822 0.94077 1.23171 0.88495 0.94581 1.01235 1.67656 1.27409 1.10647 1.17048 1.23097 0.99117 0.96145 0.88905 1.22327 0.93735 1.00371 1.02016 1.24165 0.86011 0.71630 0.87139 1.90780 1.87207 1.46715 1.18466 1.84437 1.17258 1.83491 1.46126 1.21435 0.98369 0.96365 0.99098 0.90399 0.87312 0.84083 0.84436 0.74338 0.86996 0.84590 0.82081 0.81043 0.81482 0.82846 0.70947 0.88535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -47.28 10.96 21.82 0.24 -47.04 16 2 C 0.03 1.57 5.14 85.25 0.44 2.01 16 3 Si 0.98 40.37 29.59 68.60 2.03 42.40 16 4 H -0.27 -10.78 7.11 99.48 0.71 -10.07 16 5 H -0.27 -10.63 7.11 99.48 0.71 -9.93 16 6 H -0.25 -9.60 7.11 99.48 0.71 -8.89 16 7 C -0.50 -27.52 9.05 23.47 0.21 -27.31 16 8 H 0.08 4.40 7.91 -2.91 -0.02 4.38 16 9 C 0.07 3.69 5.57 -21.32 -0.12 3.57 16 10 C -0.22 -10.06 9.78 22.77 0.22 -9.84 16 11 C -0.09 -3.67 10.01 22.18 0.22 -3.45 16 12 C -0.19 -7.45 9.55 22.70 0.22 -7.24 16 13 C -0.14 -6.59 5.87 -20.14 -0.12 -6.71 16 14 C 0.57 24.93 7.60 86.80 0.66 25.59 16 15 O -0.58 -30.18 16.00 -3.90 -0.06 -30.24 16 16 N -0.69 -20.74 4.03 -448.96 -1.81 -22.55 16 17 C 0.16 3.82 2.47 44.24 0.11 3.93 16 18 H 0.12 3.09 7.58 -2.39 -0.02 3.07 16 19 C -0.07 -0.90 4.90 29.85 0.15 -0.75 16 20 C -0.05 -0.79 4.98 -19.67 -0.10 -0.89 16 21 C -0.17 -2.70 9.82 22.36 0.22 -2.48 16 22 C 0.08 1.58 11.18 84.68 0.95 2.52 16 23 N -0.52 -12.35 10.36 -195.84 -2.03 -14.37 16 24 C 0.08 1.73 11.18 84.68 0.95 2.68 16 25 C -0.16 -2.89 9.26 22.36 0.21 -2.68 16 26 C 0.47 12.12 7.66 71.24 0.55 12.66 16 27 O -0.54 -19.41 17.08 21.96 0.38 -19.03 16 28 O -0.50 -8.32 13.23 -51.40 -0.68 -9.00 16 29 C -0.13 -7.45 8.24 23.01 0.19 -7.26 16 30 H 0.29 15.09 8.30 -92.71 -0.77 14.32 16 31 H 0.11 4.69 8.06 -2.91 -0.02 4.67 16 32 H 0.14 4.20 8.06 -2.91 -0.02 4.17 16 33 H 0.14 3.86 6.38 -2.91 -0.02 3.85 16 34 H 0.42 9.95 5.94 -92.70 -0.55 9.40 16 35 H 0.11 1.05 8.10 -2.39 -0.02 1.03 16 36 H 0.14 1.08 7.95 -2.39 -0.02 1.07 16 37 H 0.16 1.68 8.06 -2.91 -0.02 1.65 16 38 H 0.17 2.44 8.06 -2.91 -0.02 2.42 16 39 H 0.17 2.82 8.06 -2.91 -0.02 2.79 16 40 H 0.15 1.94 7.65 -2.91 -0.02 1.92 16 41 H 0.43 3.92 9.10 -74.06 -0.67 3.25 16 42 H 0.10 6.09 5.74 -2.91 -0.02 6.08 16 Total: -1.00 -83.17 369.77 2.88 -80.29 By element: Atomic # 1 Polarization: 35.30 SS G_CDS: -0.13 Total: 35.17 kcal Atomic # 6 Polarization: -20.57 SS G_CDS: 4.95 Total: -15.62 kcal Atomic # 7 Polarization: -80.37 SS G_CDS: -3.60 Total: -83.97 kcal Atomic # 8 Polarization: -57.90 SS G_CDS: -0.37 Total: -58.27 kcal Atomic # 14 Polarization: 40.37 SS G_CDS: 2.03 Total: 42.40 kcal Total: -83.17 2.88 -80.29 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601077654.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.400 kcal (2) G-P(sol) polarization free energy of solvation -83.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.287 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds