Wall clock time and date at job start Sat Apr 11 2020 05:55:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30831 * 1 3 3 Si 1.86800 * 120.00197 * 2 1 4 4 H 1.48509 * 109.46619 * 269.99661 * 3 2 1 5 5 H 1.48493 * 109.47038 * 29.99649 * 3 2 1 6 6 H 1.48498 * 109.47060 * 149.99876 * 3 2 1 7 7 C 1.39942 * 119.99581 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99351 * 162.61146 * 7 2 1 9 9 C 1.41428 * 120.00139 * 342.60686 * 7 2 1 10 10 C 1.40787 * 120.17945 * 154.90825 * 9 7 2 11 11 C 1.37707 * 120.04253 * 180.02562 * 10 9 7 12 12 C 1.38369 * 120.41352 * 359.67763 * 11 10 9 13 13 C 1.39876 * 120.35537 * 0.60530 * 12 11 10 14 14 C 1.47887 * 120.02720 * 179.68973 * 13 12 11 15 15 O 1.21550 * 120.00342 * 179.72166 * 14 13 12 16 16 N 1.34780 * 119.99701 * 359.72964 * 14 13 12 17 17 C 1.46496 * 119.99807 * 179.97438 * 16 14 13 18 18 H 1.09003 * 109.47784 * 324.99830 * 17 16 14 19 19 C 1.53001 * 109.47277 * 204.99600 * 17 16 14 20 20 C 1.50706 * 109.46732 * 65.00082 * 19 17 16 21 21 C 1.38649 * 120.78961 * 270.29630 * 20 19 17 22 22 C 1.38203 * 119.16041 * 180.21926 * 21 20 19 23 23 N 1.31867 * 120.76658 * 359.48316 * 22 21 20 24 24 C 1.31876 * 121.72354 * 0.27264 * 23 22 21 25 25 C 1.38199 * 120.76564 * 359.97438 * 24 23 22 26 26 C 1.50700 * 109.47275 * 84.99859 * 17 16 14 27 27 O 1.20833 * 119.99836 * 0.02562 * 26 17 16 28 28 O 1.34232 * 120.00383 * 179.97438 * 26 17 16 29 29 C 1.39031 * 119.95134 * 359.42075 * 13 12 11 30 30 H 0.97002 * 119.99757 * 0.02562 * 1 2 3 31 31 H 1.08000 * 119.97651 * 0.02562 * 10 9 7 32 32 H 1.08006 * 119.79592 * 180.02562 * 11 10 9 33 33 H 1.08006 * 119.82312 * 180.29847 * 12 11 10 34 34 H 0.96994 * 120.00047 * 359.97438 * 16 14 13 35 35 H 1.08997 * 109.47241 * 305.00415 * 19 17 16 36 36 H 1.09000 * 109.47390 * 185.00067 * 19 17 16 37 37 H 1.08001 * 120.41877 * 0.02562 * 21 20 19 38 38 H 1.07998 * 119.61998 * 179.75247 * 22 21 20 39 39 H 1.08003 * 119.61767 * 180.02562 * 24 23 22 40 40 H 1.08002 * 120.42264 * 180.02562 * 25 24 23 41 41 H 0.96697 * 117.00339 * 179.97438 * 28 26 17 42 42 H 1.08000 * 120.20321 * 180.25811 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2424 1.6177 0.0000 4 1 2.4899 2.0463 -1.4002 5 1 1.4398 2.6526 0.6999 6 1 3.5399 1.4401 0.7001 7 6 2.0079 -1.2120 0.0005 8 1 3.0509 -1.2334 -0.2790 9 6 1.3492 -2.4086 0.3672 10 6 1.8187 -3.6486 -0.1063 11 6 1.1748 -4.8119 0.2521 12 6 0.0690 -4.7732 1.0829 13 6 -0.4154 -3.5501 1.5584 14 6 -1.6019 -3.5166 2.4405 15 8 -2.0194 -2.4540 2.8575 16 7 -2.2202 -4.6645 2.7821 17 6 -3.3953 -4.6313 3.6563 18 1 -3.2809 -3.8323 4.3889 19 6 -3.5298 -5.9721 4.3810 20 6 -2.3529 -6.1655 5.3021 21 6 -1.1964 -6.7863 4.8554 22 6 -0.1391 -6.9502 5.7301 23 7 -0.2178 -6.5151 6.9725 24 6 -1.2997 -5.9160 7.4302 25 6 -2.3985 -5.7214 6.6148 26 6 -4.6300 -4.3814 2.8292 27 8 -4.5378 -4.2453 1.6321 28 8 -5.8322 -4.3108 3.4221 29 6 0.2228 -2.3664 1.2057 30 1 -0.4850 0.8401 -0.0004 31 1 2.6843 -3.6874 -0.7510 32 1 1.5386 -5.7610 -0.1131 33 1 -0.4258 -5.6918 1.3618 34 1 -1.8872 -5.5124 2.4491 35 1 -3.5551 -6.7797 3.6493 36 1 -4.4516 -5.9799 4.9627 37 1 -1.1240 -7.1401 3.8375 38 1 0.7637 -7.4363 5.3911 39 1 -1.3272 -5.5726 8.4538 40 1 -3.2816 -5.2296 6.9953 41 1 -6.5949 -4.1485 2.8503 42 1 -0.1452 -1.4201 1.5739 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601077658.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:49 Heat of formation + Delta-G solvation = -74.691872 kcal Electronic energy + Delta-G solvation = -28798.010890 eV Core-core repulsion = 24707.452480 eV Total energy + Delta-G solvation = -4090.558411 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.126 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.84427 -40.07039 -39.05230 -37.14446 -36.13987 -35.76218 -33.79896 -33.08102 -31.33612 -30.76501 -29.52490 -29.27075 -25.84170 -25.27179 -23.65652 -23.00584 -22.14604 -21.17083 -20.74432 -19.74861 -18.16810 -17.86914 -17.23182 -16.61656 -16.53163 -16.20161 -15.84075 -15.70788 -15.32684 -15.07441 -14.67530 -14.04513 -13.97844 -13.86290 -13.83509 -13.39638 -13.29071 -12.87389 -12.70683 -12.62361 -12.53488 -12.14741 -11.68750 -11.59431 -11.52359 -11.18552 -11.08704 -10.79020 -10.70337 -10.51703 -10.09574 -9.76045 -9.71738 -9.61235 -9.28422 -9.23210 -9.19265 -9.00680 -7.66999 -7.54025 -6.81046 -4.42991 1.01673 1.04464 2.10460 2.18855 2.75426 2.81509 3.07147 3.09841 3.15414 3.42457 3.66898 3.85208 3.91456 4.29535 4.37508 4.48446 4.50294 4.62159 4.87450 4.95586 5.01339 5.20938 5.22508 5.38854 5.53474 5.58399 5.63164 5.70488 5.82680 6.03581 6.10887 6.22926 6.42552 6.51271 6.56224 6.68468 6.95076 6.98003 7.18551 7.34897 7.62402 7.69341 7.84297 7.85949 7.86298 7.97452 8.15108 8.47789 8.75065 8.79909 8.82311 10.13630 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.010925 B = 0.003461 C = 0.003080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2562.416150 B = 8089.353237 C = 9088.030434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.783 5.783 2 C 0.073 3.927 3 Si 0.910 3.090 4 H -0.269 1.269 5 H -0.275 1.275 6 H -0.259 1.259 7 C -0.460 4.460 8 H 0.082 0.918 9 C 0.100 3.900 10 C -0.210 4.210 11 C -0.096 4.096 12 C -0.216 4.216 13 C -0.125 4.125 14 C 0.574 3.426 15 O -0.540 6.540 16 N -0.715 5.715 17 C 0.167 3.833 18 H 0.127 0.873 19 C -0.083 4.083 20 C -0.039 4.039 21 C -0.159 4.159 22 C 0.104 3.896 23 N -0.486 5.486 24 C 0.099 3.901 25 C -0.167 4.167 26 C 0.461 3.539 27 O -0.491 6.491 28 O -0.519 6.519 29 C -0.090 4.090 30 H 0.285 0.715 31 H 0.096 0.904 32 H 0.094 0.906 33 H 0.088 0.912 34 H 0.404 0.596 35 H 0.090 0.910 36 H 0.107 0.893 37 H 0.134 0.866 38 H 0.157 0.843 39 H 0.155 0.845 40 H 0.136 0.864 41 H 0.409 0.591 42 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.387 -12.212 10.550 18.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.407 5.407 2 C -0.146 4.146 3 Si 0.734 3.266 4 H -0.194 1.194 5 H -0.200 1.200 6 H -0.183 1.183 7 C -0.489 4.489 8 H 0.100 0.900 9 C 0.097 3.903 10 C -0.230 4.230 11 C -0.115 4.115 12 C -0.236 4.236 13 C -0.128 4.128 14 C 0.366 3.634 15 O -0.417 6.417 16 N -0.371 5.371 17 C 0.059 3.941 18 H 0.145 0.855 19 C -0.121 4.121 20 C -0.048 4.048 21 C -0.179 4.179 22 C -0.053 4.053 23 N -0.195 5.195 24 C -0.058 4.058 25 C -0.186 4.186 26 C 0.300 3.700 27 O -0.376 6.376 28 O -0.331 6.331 29 C -0.110 4.110 30 H 0.096 0.904 31 H 0.114 0.886 32 H 0.112 0.888 33 H 0.106 0.894 34 H 0.241 0.759 35 H 0.108 0.892 36 H 0.125 0.875 37 H 0.152 0.848 38 H 0.174 0.826 39 H 0.172 0.828 40 H 0.154 0.846 41 H 0.267 0.733 42 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -7.811 -11.411 11.298 17.857 hybrid contribution -0.894 0.636 -1.381 1.763 sum -8.705 -10.775 9.918 17.036 Atomic orbital electron populations 1.69796 1.07590 1.29812 1.33483 1.25975 0.94762 1.01577 0.92302 0.86287 0.80625 0.80489 0.79249 1.19405 1.19955 1.18332 1.19585 0.98065 0.91006 1.40198 0.90030 1.17585 0.91123 0.92507 0.89078 1.21106 1.03455 0.92802 1.05625 1.20420 0.96044 0.96763 0.98238 1.20279 1.01424 0.94417 1.07473 1.19336 0.96189 0.95491 1.01793 1.18916 0.83056 0.82384 0.79036 1.90702 1.66573 1.29913 1.54547 1.45758 1.28275 1.10789 1.52230 1.20216 0.82059 1.00363 0.91505 0.85536 1.20858 0.97645 0.95607 0.98000 1.20018 0.95006 0.95564 0.94166 1.22062 0.93942 1.00590 1.01256 1.22784 0.98033 0.95588 0.88845 1.67680 1.26180 1.09733 1.15953 1.22752 0.88476 0.94551 1.00036 1.22056 1.00857 1.01545 0.94191 1.24153 0.84879 0.73056 0.87939 1.90784 1.86342 1.44089 1.16392 1.84497 1.17761 1.84394 1.46474 1.21626 0.96395 0.96320 0.96700 0.90418 0.88557 0.88831 0.89419 0.75854 0.89196 0.87498 0.84777 0.82574 0.82793 0.84589 0.73265 0.84917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -21.01 10.97 55.55 0.61 -20.40 16 2 C 0.07 1.86 5.14 -17.34 -0.09 1.77 16 3 Si 0.91 18.88 29.59 -169.99 -5.03 13.85 16 4 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 5 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 6 H -0.26 -5.30 7.11 56.52 0.40 -4.90 16 7 C -0.46 -12.11 9.05 -37.73 -0.34 -12.46 16 8 H 0.08 2.03 7.90 -52.49 -0.41 1.62 16 9 C 0.10 2.64 5.57 -106.87 -0.59 2.04 16 10 C -0.21 -4.96 9.78 -38.81 -0.38 -5.34 16 11 C -0.10 -2.03 10.01 -39.73 -0.40 -2.42 16 12 C -0.22 -4.46 9.55 -38.92 -0.37 -4.83 16 13 C -0.12 -2.95 5.87 -105.04 -0.62 -3.56 16 14 C 0.57 12.47 7.60 -12.31 -0.09 12.37 16 15 O -0.54 -13.44 16.00 5.32 0.09 -13.35 16 16 N -0.72 -11.39 4.02 -55.86 -0.22 -11.61 16 17 C 0.17 2.16 2.47 -69.08 -0.17 1.99 16 18 H 0.13 1.76 7.58 -51.93 -0.39 1.37 16 19 C -0.08 -0.71 4.90 -27.88 -0.14 -0.85 16 20 C -0.04 -0.38 4.98 -104.31 -0.52 -0.90 16 21 C -0.16 -1.61 9.25 -39.44 -0.36 -1.98 16 22 C 0.10 1.16 11.18 -17.55 -0.20 0.96 16 23 N -0.49 -6.01 10.36 -13.25 -0.14 -6.14 16 24 C 0.10 1.02 11.18 -17.55 -0.20 0.83 16 25 C -0.17 -1.56 9.82 -39.44 -0.39 -1.95 16 26 C 0.46 6.43 7.66 36.01 0.28 6.71 16 27 O -0.49 -9.04 17.08 -18.76 -0.32 -9.36 16 28 O -0.52 -5.13 13.23 -39.26 -0.52 -5.65 16 29 C -0.09 -2.42 8.23 -38.44 -0.32 -2.74 16 30 H 0.28 7.04 8.30 -40.82 -0.34 6.70 16 31 H 0.10 2.11 8.06 -52.49 -0.42 1.69 16 32 H 0.09 1.65 8.06 -52.48 -0.42 1.23 16 33 H 0.09 1.46 6.38 -52.48 -0.33 1.13 16 34 H 0.40 5.54 5.92 -40.82 -0.24 5.30 16 35 H 0.09 0.65 8.10 -51.93 -0.42 0.23 16 36 H 0.11 0.70 7.96 -51.93 -0.41 0.29 16 37 H 0.13 1.12 7.63 -52.49 -0.40 0.72 16 38 H 0.16 1.42 8.06 -52.49 -0.42 0.99 16 39 H 0.15 1.19 8.06 -52.48 -0.42 0.77 16 40 H 0.14 0.94 8.06 -52.49 -0.42 0.52 16 41 H 0.41 2.49 9.10 45.56 0.41 2.90 16 42 H 0.13 3.86 5.77 -52.49 -0.30 3.56 16 LS Contribution 369.74 15.07 5.57 5.57 Total: -1.00 -35.00 369.74 -8.62 -43.62 By element: Atomic # 1 Polarization: 17.58 SS G_CDS: -3.76 Total: 13.83 kcal Atomic # 6 Polarization: -5.46 SS G_CDS: -4.90 Total: -10.36 kcal Atomic # 7 Polarization: -38.40 SS G_CDS: 0.25 Total: -38.16 kcal Atomic # 8 Polarization: -27.60 SS G_CDS: -0.75 Total: -28.36 kcal Atomic # 14 Polarization: 18.88 SS G_CDS: -5.03 Total: 13.85 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -35.00 -8.62 -43.62 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601077658.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.076 kcal (2) G-P(sol) polarization free energy of solvation -34.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.616 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds