Wall clock time and date at job start Sat Apr 11 2020 05:56:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30635 * 1 3 3 Si 1.86805 * 119.99750 * 2 1 4 4 H 1.48503 * 109.46834 * 240.00084 * 3 2 1 5 5 H 1.48500 * 109.47045 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.46917 * 120.00054 * 3 2 1 7 7 C 1.40124 * 120.00442 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00141 * 180.02562 * 7 2 1 9 9 C 1.41688 * 119.99812 * 359.97438 * 7 2 1 10 10 O 1.21789 * 119.99840 * 0.02562 * 9 7 2 11 11 N 1.34778 * 120.00126 * 180.02562 * 9 7 2 12 12 C 1.39382 * 120.00076 * 174.52869 * 11 9 7 13 13 C 1.38977 * 120.12695 * 339.56866 * 12 11 9 14 14 C 1.38047 * 119.98134 * 179.97438 * 13 12 11 15 15 C 1.38467 * 120.23591 * 359.97412 * 14 13 12 16 16 C 1.38150 * 120.25188 * 359.79020 * 15 14 13 17 17 C 1.38733 * 120.01470 * 0.46330 * 16 15 14 18 18 N 1.40006 * 120.11911 * 179.78634 * 17 16 15 19 19 N 1.39969 * 125.94183 * 131.89290 * 18 17 16 20 20 C 1.30703 * 109.00578 * 179.77971 * 19 18 17 21 21 C 1.40763 * 108.46389 * 0.38353 * 20 19 18 22 22 C 1.48332 * 126.33656 * 179.88055 * 21 20 19 23 23 N 1.33722 * 126.31612 * 179.71753 * 22 21 20 24 24 N 1.28563 * 109.84739 * 179.97438 * 23 22 21 25 25 N 1.28917 * 109.73649 * 359.97438 * 24 23 22 26 26 H 0.97004 * 126.42516 * 179.97438 * 25 24 23 27 27 N 1.32033 * 126.31749 * 359.71016 * 22 21 20 28 28 C 1.36124 * 125.94449 * 311.92368 * 18 17 16 29 29 N 1.38668 * 126.45150 * 359.97438 * 28 18 17 30 30 H 0.97000 * 120.00242 * 0.02562 * 1 2 3 31 31 H 0.97001 * 119.99693 * 354.52940 * 11 9 7 32 32 H 1.08002 * 120.00619 * 359.95049 * 13 12 11 33 33 H 1.08006 * 119.87832 * 180.02562 * 14 13 12 34 34 H 1.08001 * 119.87123 * 180.02562 * 15 14 13 35 35 H 1.07998 * 119.99252 * 180.23303 * 16 15 14 36 36 H 1.07995 * 125.76685 * 180.22713 * 20 19 18 37 37 H 0.97000 * 120.00105 * 174.03673 * 29 28 18 38 38 H 0.97000 * 120.00257 * 354.03711 * 29 28 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2403 1.6178 0.0000 4 1 3.0940 1.6965 -1.2126 5 1 1.2752 2.7465 -0.0006 6 1 3.0940 1.6965 1.2125 7 6 2.0071 -1.2135 -0.0005 8 1 3.0871 -1.2134 -0.0001 9 6 1.2987 -2.4405 -0.0005 10 8 0.0808 -2.4406 -0.0005 11 7 1.9726 -3.6077 -0.0005 12 6 1.2805 -4.8121 0.1145 13 6 -0.0045 -4.8304 0.6435 14 6 -0.6875 -6.0248 0.7557 15 6 -0.0970 -7.2071 0.3422 16 6 1.1780 -7.1995 -0.1896 17 6 1.8759 -6.0057 -0.3022 18 7 3.1699 -5.9961 -0.8366 19 7 3.6437 -5.1267 -1.8259 20 6 4.8966 -5.4053 -2.0728 21 6 5.2842 -6.4813 -1.2522 22 6 6.6232 -7.1182 -1.2122 23 7 6.9924 -8.1370 -0.4286 24 7 8.2221 -8.4372 -0.6535 25 7 8.7011 -7.6587 -1.5626 26 1 9.6043 -7.6733 -1.9161 27 7 7.6703 -6.7840 -1.9437 28 6 4.1858 -6.8311 -0.4850 29 7 4.1311 -7.8416 0.4630 30 1 -0.4850 0.8400 -0.0004 31 1 2.9393 -3.6096 -0.0806 32 1 -0.4685 -3.9104 0.9672 33 1 -1.6862 -6.0370 1.1666 34 1 -0.6369 -8.1381 0.4322 35 1 1.6330 -8.1235 -0.5143 36 1 5.5271 -4.8975 -2.7876 37 1 4.8865 -8.4389 0.5793 38 1 3.3375 -7.9513 1.0098 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001606345224.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:05 Heat of formation + Delta-G solvation = 205.006028 kcal Electronic energy + Delta-G solvation = -28363.333032 eV Core-core repulsion = 24245.948391 eV Total energy + Delta-G solvation = -4117.384641 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.114 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -43.16574 -41.36323 -39.20082 -37.17678 -34.88857 -34.15829 -33.62429 -33.01868 -32.62481 -32.12093 -29.56708 -28.52968 -28.45923 -26.43833 -24.64431 -23.71485 -22.67216 -22.43187 -20.68106 -20.39621 -19.84865 -18.79733 -18.08815 -17.47188 -16.56773 -16.55526 -16.31956 -15.75813 -15.47661 -15.18324 -14.85942 -14.32524 -14.12956 -13.93666 -13.76352 -13.40506 -13.17152 -12.94227 -12.67804 -12.32687 -12.03550 -11.52971 -11.42585 -11.29445 -11.20757 -11.11708 -11.00073 -10.94879 -10.85137 -10.67440 -10.55634 -10.40060 -9.70201 -9.37787 -8.94535 -8.24705 -7.76237 -7.68173 -7.06583 -6.42823 -4.96313 0.82476 1.34855 1.82763 1.87818 2.04064 2.33667 2.39934 3.05581 3.10802 3.12926 3.20995 3.69118 3.86648 3.93961 4.06444 4.19616 4.40808 4.53201 4.84496 5.08390 5.28544 5.39494 5.42130 5.59544 5.63088 5.67590 5.75112 5.88762 5.98759 6.29331 6.41021 6.43443 6.57805 6.73040 6.90721 6.99986 7.17319 7.30167 7.34691 7.54651 7.76283 7.91023 7.97897 8.08088 8.11660 8.74308 9.16704 10.29669 10.48714 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.010909 B = 0.003572 C = 0.002782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2566.176855 B = 7835.846363 C =10063.120902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.744 5.744 2 C 0.089 3.911 3 Si 0.914 3.086 4 H -0.264 1.264 5 H -0.278 1.278 6 H -0.265 1.265 7 C -0.531 4.531 8 H 0.070 0.930 9 C 0.542 3.458 10 O -0.563 6.563 11 N -0.676 5.676 12 C 0.226 3.774 13 C -0.141 4.141 14 C -0.088 4.088 15 C -0.162 4.162 16 C -0.101 4.101 17 C 0.052 3.948 18 N -0.329 5.329 19 N -0.279 5.279 20 C 0.117 3.883 21 C -0.266 4.266 22 C 0.318 3.682 23 N -0.324 5.324 24 N 0.006 4.994 25 N -0.305 5.305 26 H 0.467 0.533 27 N -0.308 5.308 28 C 0.429 3.571 29 N -0.833 5.833 30 H 0.275 0.725 31 H 0.396 0.604 32 H 0.171 0.829 33 H 0.122 0.878 34 H 0.121 0.879 35 H 0.119 0.881 36 H 0.192 0.808 37 H 0.426 0.574 38 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.151 -15.099 0.020 18.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.371 5.371 2 C -0.135 4.135 3 Si 0.738 3.262 4 H -0.189 1.189 5 H -0.203 1.203 6 H -0.190 1.190 7 C -0.565 4.565 8 H 0.088 0.912 9 C 0.353 3.647 10 O -0.448 6.448 11 N -0.314 5.314 12 C 0.120 3.880 13 C -0.162 4.162 14 C -0.108 4.108 15 C -0.183 4.183 16 C -0.122 4.122 17 C -0.042 4.042 18 N -0.110 5.110 19 N -0.094 5.094 20 C -0.075 4.075 21 C -0.287 4.287 22 C 0.039 3.961 23 N -0.203 5.203 24 N 0.010 4.990 25 N -0.152 5.152 26 H 0.320 0.680 27 N -0.152 5.152 28 C 0.194 3.806 29 N -0.382 5.382 30 H 0.085 0.915 31 H 0.230 0.770 32 H 0.188 0.812 33 H 0.140 0.860 34 H 0.139 0.861 35 H 0.137 0.863 36 H 0.209 0.791 37 H 0.260 0.740 38 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges 9.522 -14.358 -0.126 17.229 hybrid contribution 2.045 0.203 -0.170 2.062 sum 11.568 -14.155 -0.296 18.283 Atomic orbital electron populations 1.69984 1.07278 1.28181 1.31702 1.25752 0.94686 1.00712 0.92347 0.86312 0.79888 0.80190 0.79829 1.18894 1.20252 1.19010 1.20006 0.94457 0.89931 1.52132 0.91158 1.17030 0.87509 0.81933 0.78244 1.90540 1.13467 1.85613 1.55156 1.44230 1.10232 1.04230 1.72723 1.18033 0.92982 0.85429 0.91561 1.22026 0.93612 1.00501 1.00053 1.21197 0.99492 0.92005 0.98084 1.20702 0.94780 0.98313 1.04473 1.20616 0.94919 0.95411 1.01234 1.17061 0.84071 0.94829 1.08260 1.45413 1.07315 1.27126 1.31126 1.77780 1.11596 1.13981 1.06080 1.23718 0.92576 0.93735 0.97442 1.16216 0.88544 1.09705 1.14263 1.22469 0.93179 0.90768 0.89729 1.75205 1.03833 1.16396 1.24896 1.78204 1.04561 1.12920 1.03332 1.50923 1.14937 1.22012 1.27329 0.67962 1.78947 0.96173 1.15597 1.24516 1.18156 0.87361 0.86415 0.88642 1.41872 1.23423 1.33515 1.39387 0.91451 0.77000 0.81176 0.85962 0.86137 0.86266 0.79119 0.73961 0.76397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -20.98 11.73 55.55 0.65 -20.32 16 2 C 0.09 2.35 5.50 -17.35 -0.10 2.25 16 3 Si 0.91 19.27 29.56 -169.99 -5.02 14.25 16 4 H -0.26 -5.48 7.11 56.52 0.40 -5.08 16 5 H -0.28 -5.68 7.11 56.52 0.40 -5.28 16 6 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 7 C -0.53 -14.47 9.31 -37.56 -0.35 -14.82 16 8 H 0.07 1.78 7.85 -52.49 -0.41 1.37 16 9 C 0.54 14.93 7.41 -14.94 -0.11 14.82 16 10 O -0.56 -16.92 11.79 5.11 0.06 -16.86 16 11 N -0.68 -15.77 4.99 -12.33 -0.06 -15.83 16 12 C 0.23 4.73 6.50 -83.59 -0.54 4.19 16 13 C -0.14 -2.88 8.77 -39.38 -0.35 -3.22 16 14 C -0.09 -1.41 10.03 -39.57 -0.40 -1.81 16 15 C -0.16 -2.24 10.04 -39.53 -0.40 -2.63 16 16 C -0.10 -1.46 8.47 -39.43 -0.33 -1.80 16 17 C 0.05 0.92 6.11 -83.38 -0.51 0.41 16 18 N -0.33 -5.54 3.29 -9.20 -0.03 -5.57 16 19 N -0.28 -5.00 11.05 30.79 0.34 -4.66 16 20 C 0.12 1.75 11.97 -17.08 -0.20 1.54 16 21 C -0.27 -3.83 6.15 -104.70 -0.64 -4.48 16 22 C 0.32 4.26 8.14 -156.43 -1.27 2.99 16 23 N -0.32 -4.07 10.73 32.11 0.34 -3.73 16 24 N 0.01 0.07 13.42 60.35 0.81 0.88 16 25 N -0.31 -2.72 8.44 60.35 0.51 -2.21 16 26 H 0.47 1.97 8.96 -331.91 -2.98 -1.01 16 27 N -0.31 -3.73 12.90 32.12 0.41 -3.32 16 28 C 0.43 6.17 7.80 -152.31 -1.19 4.99 16 29 N -0.83 -9.20 8.81 31.60 0.28 -8.92 16 30 H 0.27 6.99 8.29 -40.82 -0.34 6.66 16 31 H 0.40 8.75 7.26 -40.82 -0.30 8.45 16 32 H 0.17 4.06 5.46 -52.49 -0.29 3.77 16 33 H 0.12 1.65 8.06 -52.48 -0.42 1.22 16 34 H 0.12 1.28 8.06 -52.49 -0.42 0.85 16 35 H 0.12 1.45 7.76 -52.49 -0.41 1.04 16 36 H 0.19 2.31 8.06 -52.49 -0.42 1.88 16 37 H 0.43 4.28 7.26 -40.82 -0.30 3.99 16 38 H 0.41 3.96 7.48 -40.82 -0.31 3.65 16 LS Contribution 338.74 15.07 5.10 5.10 Total: -1.00 -33.91 338.74 -8.38 -42.29 By element: Atomic # 1 Polarization: 21.86 SS G_CDS: -5.38 Total: 16.47 kcal Atomic # 6 Polarization: 8.83 SS G_CDS: -6.39 Total: 2.43 kcal Atomic # 7 Polarization: -66.94 SS G_CDS: 3.26 Total: -63.68 kcal Atomic # 8 Polarization: -16.92 SS G_CDS: 0.06 Total: -16.86 kcal Atomic # 14 Polarization: 19.27 SS G_CDS: -5.02 Total: 14.25 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -33.91 -8.38 -42.29 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001606345224.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 247.292 kcal (2) G-P(sol) polarization free energy of solvation -33.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 213.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.286 kcal (6) G-S(sol) free energy of system = (1) + (5) 205.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds