Wall clock time and date at job start Sat Apr 11 2020 05:56:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30745 * 1 3 3 Si 1.86800 * 120.00067 * 2 1 4 4 H 1.48498 * 109.47229 * 270.00356 * 3 2 1 5 5 H 1.48494 * 109.47149 * 30.00330 * 3 2 1 6 6 H 1.48504 * 109.47124 * 150.00207 * 3 2 1 7 7 C 1.40031 * 119.99850 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99667 * 180.02562 * 7 2 1 9 9 C 1.41315 * 119.99953 * 359.97438 * 7 2 1 10 10 C 1.40586 * 119.78340 * 180.02562 * 9 7 2 11 11 C 1.38348 * 119.15055 * 180.02562 * 10 9 7 12 12 C 1.38637 * 118.67855 * 359.97438 * 11 10 9 13 13 C 1.39755 * 119.49007 * 0.02562 * 12 11 10 14 14 N 1.38831 * 119.58591 * 179.97438 * 13 12 11 15 15 C 1.46506 * 119.99665 * 359.97438 * 14 13 12 16 16 C 1.50699 * 109.47063 * 179.97438 * 15 14 13 17 17 C 1.38355 * 119.86613 * 90.00143 * 16 15 14 18 18 C 1.38000 * 120.17084 * 180.02562 * 17 16 15 19 19 C 1.39305 * 119.90732 * 359.97438 * 18 17 16 20 20 C 1.48434 * 120.12752 * 179.72587 * 19 18 17 21 21 N 1.34051 * 126.67855 * 359.68433 * 20 19 18 22 22 N 1.28993 * 107.26763 * 179.86915 * 21 20 19 23 23 N 1.28733 * 108.94257 * 0.40474 * 22 21 20 24 24 H 0.97002 * 125.33517 * 179.76493 * 23 22 21 25 25 N 1.28867 * 109.32229 * 359.74135 * 23 22 21 26 26 C 1.39498 * 119.73887 * 0.02562 * 19 18 17 27 27 F 1.35096 * 120.08386 * 179.97438 * 26 19 18 28 28 C 1.38246 * 119.86999 * 269.97941 * 16 15 14 29 29 N 1.31983 * 120.83592 * 0.25186 * 13 12 11 30 30 H 0.96996 * 119.99864 * 359.97438 * 1 2 3 31 31 H 1.08005 * 120.42597 * 0.02562 * 10 9 7 32 32 H 1.07996 * 120.66377 * 179.97438 * 11 10 9 33 33 H 1.07996 * 120.25511 * 180.02562 * 12 11 10 34 34 H 0.97001 * 120.00534 * 179.97438 * 14 13 12 35 35 H 1.09006 * 109.46763 * 60.00245 * 15 14 13 36 36 H 1.08999 * 109.47254 * 300.00616 * 15 14 13 37 37 H 1.08002 * 119.91407 * 0.02562 * 17 16 15 38 38 H 1.07998 * 120.04781 * 180.02562 * 18 17 16 39 39 H 1.08003 * 119.95380 * 0.02800 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2415 1.6177 0.0000 4 1 2.4889 2.0465 -1.4000 5 1 1.4390 2.6526 0.7001 6 1 3.5391 1.4401 0.7000 7 6 2.0076 -1.2127 -0.0005 8 1 3.0876 -1.2127 -0.0001 9 6 1.3010 -2.4365 -0.0005 10 6 2.0084 -3.6514 -0.0005 11 6 1.3035 -4.8418 -0.0011 12 6 -0.0821 -4.7945 -0.0011 13 6 -0.7282 -3.5552 -0.0010 14 7 -2.1156 -3.5055 -0.0016 15 6 -2.8930 -4.7473 -0.0027 16 6 -4.3638 -4.4191 -0.0024 17 6 -5.0362 -4.2680 -1.2021 18 6 -6.3830 -3.9670 -1.2092 19 6 -7.0672 -3.8154 -0.0053 20 6 -8.5144 -3.4856 -0.0072 21 7 -9.2916 -3.2985 -1.0832 22 7 -10.4798 -3.0346 -0.6562 23 7 -10.4723 -3.0412 0.6311 24 1 -11.2405 -2.8683 1.1976 25 7 -9.2842 -3.3139 1.0492 26 6 -6.3854 -3.9685 1.2021 27 9 -7.0419 -3.8225 2.3738 28 6 -5.0359 -4.2707 1.1965 29 7 -0.0360 -2.4314 -0.0060 30 1 -0.4850 0.8400 0.0004 31 1 3.0885 -3.6554 -0.0001 32 1 1.8221 -5.7891 -0.0015 33 1 -0.6578 -5.7082 -0.0011 34 1 -2.5703 -2.6486 -0.0012 35 1 -2.6506 -5.3284 0.8871 36 1 -2.6498 -5.3274 -0.8929 37 1 -4.5058 -4.3860 -2.1355 38 1 -6.9060 -3.8499 -2.1468 39 1 -4.5060 -4.3896 2.1301 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001606351094.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:08 Heat of formation + Delta-G solvation = 149.205769 kcal Electronic energy + Delta-G solvation = -27043.149935 eV Core-core repulsion = 22903.425652 eV Total energy + Delta-G solvation = -4139.724283 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.114 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -49.02540 -44.73309 -39.55345 -38.18353 -35.54461 -34.57725 -33.84416 -33.18190 -31.38299 -30.79765 -30.28571 -28.77911 -26.20958 -25.34168 -25.03818 -23.56509 -22.79514 -21.70773 -21.27279 -20.35089 -19.51087 -17.60149 -17.44770 -17.32017 -16.85281 -16.43684 -16.12422 -15.73001 -14.99125 -14.76761 -14.44280 -14.33935 -14.14678 -13.95951 -13.57748 -13.33401 -13.02000 -12.78102 -12.65528 -12.57066 -12.10917 -11.90794 -11.76886 -11.65639 -11.42086 -11.24808 -11.18980 -11.16840 -10.98421 -10.62374 -10.44823 -9.93694 -9.51405 -9.13520 -8.91789 -8.81051 -7.92016 -7.51777 -6.55593 -6.32934 -4.47565 0.31478 0.87010 0.99030 1.94153 2.00523 2.87568 3.11897 3.14867 3.22848 3.29709 3.30067 3.34034 3.77506 3.98739 4.00091 4.31374 4.53349 4.64707 4.84171 4.92526 4.98886 5.06094 5.19778 5.49116 5.53510 5.79272 5.82841 5.88621 5.97335 6.05839 6.07521 6.14514 6.35851 6.55143 6.57071 6.83941 6.88013 6.92008 7.24608 7.57726 7.79269 7.83870 7.90187 8.15736 8.33785 8.64792 8.79619 9.10440 10.23795 10.39839 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.014736 B = 0.002337 C = 0.002135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1899.691906 B =11977.007777 C =13112.277777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.715 5.715 2 C 0.071 3.929 3 Si 0.905 3.095 4 H -0.270 1.270 5 H -0.278 1.278 6 H -0.262 1.262 7 C -0.433 4.433 8 H 0.083 0.917 9 C 0.292 3.708 10 C -0.315 4.315 11 C -0.032 4.032 12 C -0.368 4.368 13 C 0.411 3.589 14 N -0.735 5.735 15 C 0.177 3.823 16 C -0.042 4.042 17 C -0.112 4.112 18 C -0.050 4.050 19 C -0.058 4.058 20 C 0.220 3.780 21 N -0.265 5.265 22 N -0.050 5.050 23 N -0.228 5.228 24 H 0.476 0.524 25 N -0.282 5.282 26 C 0.136 3.864 27 F -0.122 7.122 28 C -0.138 4.138 29 N -0.530 5.530 30 H 0.270 0.730 31 H 0.095 0.905 32 H 0.093 0.907 33 H 0.090 0.910 34 H 0.398 0.602 35 H 0.066 0.934 36 H 0.068 0.932 37 H 0.143 0.857 38 H 0.146 0.854 39 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.385 -6.487 0.823 19.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.336 5.336 2 C -0.154 4.154 3 Si 0.729 3.271 4 H -0.195 1.195 5 H -0.203 1.203 6 H -0.186 1.186 7 C -0.465 4.465 8 H 0.101 0.899 9 C 0.165 3.835 10 C -0.338 4.338 11 C -0.056 4.056 12 C -0.394 4.394 13 C 0.172 3.828 14 N -0.373 5.373 15 C 0.052 3.948 16 C -0.044 4.044 17 C -0.130 4.130 18 C -0.070 4.070 19 C -0.062 4.062 20 C -0.060 4.060 21 N -0.138 5.138 22 N -0.045 5.045 23 N -0.074 5.074 24 H 0.330 0.670 25 N -0.133 5.133 26 C 0.114 3.886 27 F -0.100 7.100 28 C -0.157 4.157 29 N -0.252 5.252 30 H 0.081 0.919 31 H 0.113 0.887 32 H 0.111 0.889 33 H 0.109 0.891 34 H 0.233 0.767 35 H 0.084 0.916 36 H 0.086 0.914 37 H 0.160 0.840 38 H 0.164 0.836 39 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -19.624 -5.607 0.585 20.418 hybrid contribution 0.336 0.280 0.860 0.965 sum -19.288 -5.327 1.445 20.062 Atomic orbital electron populations 1.70143 1.07117 1.27361 1.29001 1.26049 0.94865 1.00904 0.93591 0.86383 0.80510 0.81079 0.79140 1.19500 1.20267 1.18610 1.19586 0.94163 0.89383 1.43398 0.89888 1.18196 0.86855 0.91858 0.86589 1.21544 0.98445 0.93481 1.20353 1.20595 0.93458 0.96372 0.95190 1.20592 0.94642 0.95397 1.28795 1.18468 0.83960 0.90332 0.90062 1.44065 1.02678 1.06223 1.84350 1.20019 0.84264 0.88396 1.02132 1.20090 0.96332 0.95766 0.92194 1.21170 0.93544 0.99682 0.98629 1.21071 0.94033 0.95243 0.96614 1.17256 0.86214 1.09022 0.93737 1.23453 0.96276 1.01687 0.84559 1.76078 0.95741 1.16622 1.25363 1.78901 1.16607 1.14956 0.94079 1.47774 1.09697 1.44119 1.05808 0.66994 1.75144 0.92091 1.19737 1.26369 1.17528 0.90434 1.00276 0.80353 1.91560 1.80837 1.92640 1.44999 1.21075 0.91797 1.02634 1.00192 1.68194 1.07671 1.24334 1.24970 0.91928 0.88710 0.88918 0.89136 0.76741 0.91641 0.91388 0.83969 0.83596 0.83579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.71 -18.84 11.46 55.55 0.64 -18.20 16 2 C 0.07 1.81 5.50 -17.34 -0.10 1.71 16 3 Si 0.90 18.65 29.56 -169.99 -5.02 13.62 16 4 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 5 H -0.28 -5.62 7.11 56.52 0.40 -5.22 16 6 H -0.26 -5.32 7.11 56.52 0.40 -4.92 16 7 C -0.43 -11.63 9.14 -37.74 -0.34 -11.98 16 8 H 0.08 2.09 7.85 -52.49 -0.41 1.68 16 9 C 0.29 8.02 6.55 -85.00 -0.56 7.47 16 10 C -0.32 -7.85 9.83 -38.66 -0.38 -8.23 16 11 C -0.03 -0.72 10.15 -39.39 -0.40 -1.12 16 12 C -0.37 -8.14 9.34 -38.87 -0.36 -8.50 16 13 C 0.41 9.66 7.65 -155.31 -1.19 8.47 16 14 N -0.74 -13.80 5.71 -61.57 -0.35 -14.15 16 15 C 0.18 2.46 5.00 -5.19 -0.03 2.43 16 16 C -0.04 -0.50 5.25 -104.58 -0.55 -1.05 16 17 C -0.11 -1.17 9.68 -39.63 -0.38 -1.56 16 18 C -0.05 -0.52 9.70 -39.27 -0.38 -0.90 16 19 C -0.06 -0.68 5.88 -104.83 -0.62 -1.30 16 20 C 0.22 2.67 7.92 -156.30 -1.24 1.43 16 21 N -0.26 -3.19 12.23 32.15 0.39 -2.80 16 22 N -0.05 -0.51 13.47 60.35 0.81 0.30 16 23 N -0.23 -1.78 7.90 60.35 0.48 -1.31 16 24 H 0.48 1.32 8.96 -340.36 -3.05 -1.73 16 25 N -0.28 -3.11 11.09 32.17 0.36 -2.75 16 26 C 0.14 1.66 7.28 -39.09 -0.28 1.37 16 27 F -0.12 -1.58 15.84 2.25 0.04 -1.55 16 28 C -0.14 -1.61 9.66 -39.56 -0.38 -1.99 16 29 N -0.53 -14.36 7.89 -10.33 -0.08 -14.44 16 30 H 0.27 6.48 8.29 -40.82 -0.34 6.14 16 31 H 0.09 2.20 8.06 -52.48 -0.42 1.78 16 32 H 0.09 1.79 8.06 -52.49 -0.42 1.36 16 33 H 0.09 1.74 6.68 -52.49 -0.35 1.38 16 34 H 0.40 7.65 8.58 -40.82 -0.35 7.30 16 35 H 0.07 0.89 7.86 -51.93 -0.41 0.48 16 36 H 0.07 0.90 7.86 -51.93 -0.41 0.49 16 37 H 0.14 1.31 8.06 -52.49 -0.42 0.89 16 38 H 0.15 1.31 7.89 -52.49 -0.41 0.90 16 39 H 0.15 1.60 8.06 -52.48 -0.42 1.18 16 LS Contribution 351.21 15.07 5.29 5.29 Total: -1.00 -32.23 351.21 -10.86 -43.09 By element: Atomic # 1 Polarization: 12.84 SS G_CDS: -6.22 Total: 6.62 kcal Atomic # 6 Polarization: -6.55 SS G_CDS: -7.19 Total: -13.74 kcal Atomic # 7 Polarization: -55.58 SS G_CDS: 2.24 Total: -53.34 kcal Atomic # 9 Polarization: -1.58 SS G_CDS: 0.04 Total: -1.55 kcal Atomic # 14 Polarization: 18.65 SS G_CDS: -5.02 Total: 13.62 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -32.23 -10.86 -43.09 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001606351094.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 192.299 kcal (2) G-P(sol) polarization free energy of solvation -32.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 160.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.094 kcal (6) G-S(sol) free energy of system = (1) + (5) 149.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds