Wall clock time and date at job start Sat Apr 11 2020 05:56:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30745 * 1 3 3 Si 1.86800 * 120.00067 * 2 1 4 4 H 1.48498 * 109.47229 * 270.00356 * 3 2 1 5 5 H 1.48494 * 109.47149 * 30.00330 * 3 2 1 6 6 H 1.48504 * 109.47124 * 150.00207 * 3 2 1 7 7 C 1.40031 * 119.99850 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99667 * 180.02562 * 7 2 1 9 9 C 1.41315 * 119.99953 * 359.97438 * 7 2 1 10 10 C 1.40586 * 119.78340 * 180.02562 * 9 7 2 11 11 C 1.38348 * 119.15055 * 180.02562 * 10 9 7 12 12 C 1.38637 * 118.67855 * 359.97438 * 11 10 9 13 13 C 1.39755 * 119.49007 * 0.02562 * 12 11 10 14 14 N 1.38831 * 119.58591 * 179.97438 * 13 12 11 15 15 C 1.46506 * 119.99665 * 359.97438 * 14 13 12 16 16 C 1.50699 * 109.47063 * 179.97438 * 15 14 13 17 17 C 1.38355 * 119.86613 * 90.00143 * 16 15 14 18 18 C 1.38000 * 120.17084 * 180.02562 * 17 16 15 19 19 C 1.39305 * 119.90732 * 359.97438 * 18 17 16 20 20 C 1.48434 * 120.12752 * 179.72587 * 19 18 17 21 21 N 1.34051 * 126.67855 * 359.68433 * 20 19 18 22 22 N 1.28993 * 107.26763 * 179.86915 * 21 20 19 23 23 N 1.28733 * 108.94257 * 0.40474 * 22 21 20 24 24 H 0.97002 * 125.33517 * 179.76493 * 23 22 21 25 25 N 1.28867 * 109.32229 * 359.74135 * 23 22 21 26 26 C 1.39498 * 119.73887 * 0.02562 * 19 18 17 27 27 F 1.35096 * 120.08386 * 179.97438 * 26 19 18 28 28 C 1.38246 * 119.86999 * 269.97941 * 16 15 14 29 29 N 1.31983 * 120.83592 * 0.25186 * 13 12 11 30 30 H 0.96996 * 119.99864 * 359.97438 * 1 2 3 31 31 H 1.08005 * 120.42597 * 0.02562 * 10 9 7 32 32 H 1.07996 * 120.66377 * 179.97438 * 11 10 9 33 33 H 1.07996 * 120.25511 * 180.02562 * 12 11 10 34 34 H 0.97001 * 120.00534 * 179.97438 * 14 13 12 35 35 H 1.09006 * 109.46763 * 60.00245 * 15 14 13 36 36 H 1.08999 * 109.47254 * 300.00616 * 15 14 13 37 37 H 1.08002 * 119.91407 * 0.02562 * 17 16 15 38 38 H 1.07998 * 120.04781 * 180.02562 * 18 17 16 39 39 H 1.08003 * 119.95380 * 0.02800 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2415 1.6177 0.0000 4 1 2.4889 2.0465 -1.4000 5 1 1.4390 2.6526 0.7001 6 1 3.5391 1.4401 0.7000 7 6 2.0076 -1.2127 -0.0005 8 1 3.0876 -1.2127 -0.0001 9 6 1.3010 -2.4365 -0.0005 10 6 2.0084 -3.6514 -0.0005 11 6 1.3035 -4.8418 -0.0011 12 6 -0.0821 -4.7945 -0.0011 13 6 -0.7282 -3.5552 -0.0010 14 7 -2.1156 -3.5055 -0.0016 15 6 -2.8930 -4.7473 -0.0027 16 6 -4.3638 -4.4191 -0.0024 17 6 -5.0362 -4.2680 -1.2021 18 6 -6.3830 -3.9670 -1.2092 19 6 -7.0672 -3.8154 -0.0053 20 6 -8.5144 -3.4856 -0.0072 21 7 -9.2916 -3.2985 -1.0832 22 7 -10.4798 -3.0346 -0.6562 23 7 -10.4723 -3.0412 0.6311 24 1 -11.2405 -2.8683 1.1976 25 7 -9.2842 -3.3139 1.0492 26 6 -6.3854 -3.9685 1.2021 27 9 -7.0419 -3.8225 2.3738 28 6 -5.0359 -4.2707 1.1965 29 7 -0.0360 -2.4314 -0.0060 30 1 -0.4850 0.8400 0.0004 31 1 3.0885 -3.6554 -0.0001 32 1 1.8221 -5.7891 -0.0015 33 1 -0.6578 -5.7082 -0.0011 34 1 -2.5703 -2.6486 -0.0012 35 1 -2.6506 -5.3284 0.8871 36 1 -2.6498 -5.3274 -0.8929 37 1 -4.5058 -4.3860 -2.1355 38 1 -6.9060 -3.8499 -2.1468 39 1 -4.5060 -4.3896 2.1301 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001606351094.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:07 Heat of formation + Delta-G solvation = 129.596100 kcal Electronic energy + Delta-G solvation = -27044.000274 eV Core-core repulsion = 22903.425652 eV Total energy + Delta-G solvation = -4140.574622 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.114 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -49.97939 -45.54284 -40.56423 -39.87516 -36.88175 -35.55798 -35.15968 -34.54421 -32.60008 -32.07018 -31.68764 -30.35586 -27.47767 -27.10302 -25.85547 -24.56996 -23.67670 -23.32361 -22.53392 -21.94819 -20.28310 -19.25164 -18.59084 -18.25356 -17.88502 -17.67602 -17.19397 -16.71566 -16.58657 -16.41240 -15.94341 -15.36254 -15.27703 -15.02268 -14.92759 -14.80218 -14.43246 -14.10440 -13.62728 -13.58567 -13.51260 -13.35949 -12.88787 -12.76911 -12.69219 -12.55999 -12.48306 -12.29941 -12.23552 -12.13534 -11.99007 -11.70419 -11.26746 -10.62717 -10.01721 -9.78298 -9.72106 -9.39403 -8.25547 -8.19161 -6.43424 -0.57925 0.06449 0.11542 1.10376 1.10396 1.33932 1.40235 1.43309 1.55864 1.60969 2.27062 2.35894 2.49530 2.90180 2.95882 2.96457 3.12616 3.54070 3.75435 4.03949 4.10394 4.13950 4.17617 4.35051 4.43801 4.50287 4.62543 4.73586 4.87598 4.92230 4.99475 5.04359 5.05904 5.13372 5.16700 5.40360 5.42396 5.53282 5.68765 5.76528 6.02215 6.11412 6.26783 6.59231 6.87162 6.97762 7.01696 7.25738 8.38998 8.54800 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.014736 B = 0.002337 C = 0.002135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1899.691906 B =11977.007777 C =13112.277777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.750 5.750 2 C 0.027 3.973 3 Si 0.983 3.017 4 H -0.264 1.264 5 H -0.270 1.270 6 H -0.258 1.258 7 C -0.472 4.472 8 H 0.084 0.916 9 C 0.259 3.741 10 C -0.345 4.345 11 C -0.030 4.030 12 C -0.363 4.363 13 C 0.396 3.604 14 N -0.730 5.730 15 C 0.177 3.823 16 C -0.047 4.047 17 C -0.103 4.103 18 C -0.045 4.045 19 C -0.061 4.061 20 C 0.206 3.794 21 N -0.283 5.283 22 N -0.052 5.052 23 N -0.200 5.200 24 H 0.495 0.505 25 N -0.293 5.293 26 C 0.123 3.877 27 F -0.130 7.130 28 C -0.136 4.136 29 N -0.565 5.565 30 H 0.275 0.725 31 H 0.100 0.900 32 H 0.129 0.871 33 H 0.125 0.875 34 H 0.393 0.607 35 H 0.073 0.927 36 H 0.082 0.918 37 H 0.159 0.841 38 H 0.161 0.839 39 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.340 -7.082 0.519 20.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.373 5.373 2 C -0.195 4.195 3 Si 0.803 3.197 4 H -0.189 1.189 5 H -0.195 1.195 6 H -0.181 1.181 7 C -0.504 4.504 8 H 0.103 0.897 9 C 0.132 3.868 10 C -0.368 4.368 11 C -0.054 4.054 12 C -0.389 4.389 13 C 0.155 3.845 14 N -0.365 5.365 15 C 0.054 3.946 16 C -0.049 4.049 17 C -0.121 4.121 18 C -0.065 4.065 19 C -0.065 4.065 20 C -0.074 4.074 21 N -0.156 5.156 22 N -0.047 5.047 23 N -0.051 5.051 24 H 0.354 0.646 25 N -0.146 5.146 26 C 0.101 3.899 27 F -0.108 7.108 28 C -0.156 4.156 29 N -0.288 5.288 30 H 0.085 0.915 31 H 0.118 0.882 32 H 0.147 0.853 33 H 0.143 0.857 34 H 0.227 0.773 35 H 0.091 0.909 36 H 0.100 0.900 37 H 0.177 0.823 38 H 0.179 0.821 39 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -20.636 -6.243 0.286 21.561 hybrid contribution 0.435 0.321 0.977 1.117 sum -20.200 -5.921 1.263 21.088 Atomic orbital electron populations 1.70239 1.08624 1.28520 1.29870 1.26907 0.95732 1.04185 0.92641 0.85211 0.79029 0.76133 0.79299 1.18872 1.19472 1.18135 1.19914 0.94531 0.90557 1.45427 0.89746 1.18649 0.87710 0.93132 0.87323 1.21689 0.98937 0.93890 1.22267 1.21023 0.93916 0.97060 0.93449 1.20986 0.94878 0.96176 1.26833 1.18915 0.85716 0.90274 0.89554 1.44244 1.01282 1.07847 1.83164 1.20198 0.84825 0.86508 1.03087 1.19887 0.95193 0.97081 0.92713 1.21348 0.93565 0.98397 0.98813 1.21229 0.93951 0.94536 0.96773 1.17433 0.86417 1.08652 0.94044 1.23551 0.96587 1.02421 0.84852 1.76058 0.96219 1.17512 1.25790 1.78838 1.16055 1.14982 0.94790 1.47817 1.09634 1.42096 1.05510 0.64590 1.75106 0.92938 1.20015 1.26492 1.17609 0.90657 1.01291 0.80328 1.91534 1.80998 1.92849 1.45434 1.21112 0.91695 1.02275 1.00471 1.68158 1.07914 1.26369 1.26362 0.91478 0.88220 0.85290 0.85702 0.77302 0.90852 0.89978 0.82341 0.82099 0.83218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -40.55 11.46 21.84 0.25 -40.30 16 2 C 0.03 1.40 5.50 85.29 0.47 1.87 16 3 Si 0.98 38.83 29.56 68.60 2.03 40.86 16 4 H -0.26 -10.08 7.11 99.48 0.71 -9.37 16 5 H -0.27 -10.22 7.11 99.48 0.71 -9.51 16 6 H -0.26 -9.86 7.11 99.48 0.71 -9.15 16 7 C -0.47 -26.19 9.14 23.46 0.21 -25.98 16 8 H 0.08 4.42 7.85 -2.91 -0.02 4.39 16 9 C 0.26 14.65 6.55 40.19 0.26 14.91 16 10 C -0.34 -17.37 9.83 22.87 0.22 -17.15 16 11 C -0.03 -1.32 10.15 22.39 0.23 -1.09 16 12 C -0.36 -15.37 9.34 22.73 0.21 -15.16 16 13 C 0.40 18.44 7.65 133.40 1.02 19.46 16 14 N -0.73 -26.78 5.71 -348.70 -1.99 -28.77 16 15 C 0.18 4.55 5.00 85.63 0.43 4.98 16 16 C -0.05 -1.03 5.25 -19.83 -0.10 -1.14 16 17 C -0.10 -1.95 9.68 22.24 0.22 -1.74 16 18 C -0.04 -0.86 9.70 22.47 0.22 -0.64 16 19 C -0.06 -1.38 5.88 -20.00 -0.12 -1.50 16 20 C 0.21 4.77 7.92 137.37 1.09 5.86 16 21 N -0.28 -6.49 12.23 -52.19 -0.64 -7.13 16 22 N -0.05 -0.98 13.47 37.02 0.50 -0.48 16 23 N -0.20 -2.81 7.90 37.02 0.29 -2.52 16 24 H 0.49 1.84 8.96 -347.53 -3.12 -1.28 16 25 N -0.29 -6.12 11.09 -52.14 -0.58 -6.69 16 26 C 0.12 2.90 7.28 22.59 0.16 3.07 16 27 F -0.13 -3.31 15.84 44.97 0.71 -2.59 16 28 C -0.14 -3.05 9.66 22.28 0.22 -2.84 16 29 N -0.57 -31.26 7.89 -186.59 -1.47 -32.73 16 30 H 0.27 13.49 8.29 -92.71 -0.77 12.72 16 31 H 0.10 4.72 8.06 -2.91 -0.02 4.70 16 32 H 0.13 4.59 8.06 -2.91 -0.02 4.56 16 33 H 0.13 4.34 6.68 -2.91 -0.02 4.32 16 34 H 0.39 15.10 8.58 -92.71 -0.80 14.30 16 35 H 0.07 1.80 7.86 -2.38 -0.02 1.78 16 36 H 0.08 1.92 7.86 -2.39 -0.02 1.90 16 37 H 0.16 2.49 8.06 -2.91 -0.02 2.47 16 38 H 0.16 2.58 7.89 -2.91 -0.02 2.56 16 39 H 0.15 3.16 8.06 -2.91 -0.02 3.14 16 Total: -1.00 -70.98 351.21 1.08 -69.90 By element: Atomic # 1 Polarization: 30.29 SS G_CDS: -2.76 Total: 27.54 kcal Atomic # 6 Polarization: -21.81 SS G_CDS: 4.74 Total: -17.08 kcal Atomic # 7 Polarization: -114.98 SS G_CDS: -3.64 Total: -118.62 kcal Atomic # 9 Polarization: -3.31 SS G_CDS: 0.71 Total: -2.59 kcal Atomic # 14 Polarization: 38.83 SS G_CDS: 2.03 Total: 40.86 kcal Total: -70.98 1.08 -69.90 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001606351094.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 199.492 kcal (2) G-P(sol) polarization free energy of solvation -70.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 128.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.896 kcal (6) G-S(sol) free energy of system = (1) + (5) 129.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds