Wall clock time and date at job start Sat Apr 11 2020 05:56:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86795 * 120.00629 * 2 1 4 4 H 1.48498 * 109.47369 * 269.54666 * 3 2 1 5 5 H 1.48504 * 109.46935 * 29.54422 * 3 2 1 6 6 H 1.48496 * 109.47508 * 149.54398 * 3 2 1 7 7 C 1.37882 * 119.99662 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00004 * 352.43278 * 7 2 1 9 9 C 1.50695 * 120.00082 * 172.43186 * 7 2 1 10 10 H 1.09005 * 109.47611 * 354.76592 * 9 7 2 11 11 C 1.50706 * 109.47389 * 234.76822 * 9 7 2 12 12 O 1.21278 * 119.99901 * 249.03838 * 11 9 7 13 13 N 1.34776 * 119.99955 * 69.03059 * 11 9 7 14 14 C 1.46495 * 120.00082 * 180.02562 * 13 11 9 15 15 C 1.50701 * 109.47428 * 180.02562 * 14 13 11 16 16 C 1.38624 * 120.75364 * 89.99641 * 15 14 13 17 17 C 1.38581 * 119.35527 * 179.97438 * 16 15 14 18 18 N 1.31506 * 120.90918 * 0.02562 * 17 16 15 19 19 C 1.32739 * 121.63816 * 359.97438 * 18 17 16 20 20 C 1.48077 * 119.72470 * 180.02562 * 19 18 17 21 21 O 1.21434 * 120.00004 * 180.02562 * 20 19 18 22 22 O 1.34679 * 120.00092 * 0.02562 * 20 19 18 23 23 C 1.38588 * 120.75084 * 269.72224 * 15 14 13 24 24 C 1.50705 * 109.47373 * 114.76639 * 9 7 2 25 25 C 1.38238 * 119.99627 * 51.80961 * 24 9 7 26 26 C 1.38235 * 119.99522 * 179.81361 * 25 24 9 27 27 C 1.38235 * 120.00138 * 0.39159 * 26 25 24 28 28 C 1.38234 * 119.99883 * 359.85892 * 27 26 25 29 29 C 1.38230 * 120.00207 * 359.95582 * 28 27 26 30 30 H 0.97000 * 119.99506 * 359.97438 * 1 2 3 31 31 H 0.97004 * 119.99589 * 0.02562 * 13 11 9 32 32 H 1.09007 * 109.46966 * 300.00085 * 14 13 11 33 33 H 1.08999 * 109.47384 * 60.00210 * 14 13 11 34 34 H 1.07997 * 120.32358 * 0.02562 * 16 15 14 35 35 H 1.08003 * 119.54541 * 179.97438 * 17 16 15 36 36 H 0.96694 * 117.00354 * 180.02562 * 22 20 19 37 37 H 1.07997 * 120.47702 * 359.97438 * 23 15 14 38 38 H 1.07999 * 119.99828 * 359.97438 * 25 24 9 39 39 H 1.08004 * 119.99552 * 180.22531 * 26 25 24 40 40 H 1.07997 * 119.99982 * 179.83783 * 27 26 25 41 41 H 1.08003 * 119.99484 * 179.97438 * 28 27 26 42 42 H 1.08000 * 120.00288 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.5065 2.0408 -1.4000 5 1 1.4420 2.6554 0.6904 6 1 3.5419 1.4428 0.7096 7 6 2.0045 -1.1941 -0.0005 8 1 1.4715 -2.1254 0.1222 9 6 3.5016 -1.1998 -0.1724 10 1 3.8482 -0.1862 -0.3737 11 6 3.8714 -2.0956 -1.3266 12 8 4.4510 -3.1409 -1.1214 13 7 3.5578 -1.7350 -2.5868 14 6 3.9167 -2.6059 -3.7087 15 6 3.4577 -1.9776 -4.9993 16 6 4.2885 -1.1221 -5.7061 17 6 3.8370 -0.5609 -6.8900 18 7 2.6341 -0.8288 -7.3490 19 6 1.8076 -1.6423 -6.7031 20 6 0.4624 -1.9149 -7.2588 21 8 -0.2978 -2.6579 -6.6719 22 8 0.0821 -1.3387 -8.4152 23 6 2.1974 -2.2465 -5.5094 24 6 4.1501 -1.7113 1.0882 25 6 3.7383 -2.9101 1.6399 26 6 4.3358 -3.3811 2.7940 27 6 5.3394 -2.6494 3.4009 28 6 5.7475 -1.4482 2.8520 29 6 5.1528 -0.9790 1.6958 30 1 -0.4849 0.8401 0.0004 31 1 3.0944 -0.8987 -2.7509 32 1 4.9984 -2.7385 -3.7342 33 1 3.4346 -3.5756 -3.5847 34 1 5.2783 -0.8959 -5.3382 35 1 4.4816 0.1064 -7.4429 36 1 -0.8053 -1.5465 -8.7382 37 1 1.5258 -2.9120 -4.9875 38 1 2.9516 -3.4798 1.1677 39 1 4.0166 -4.3195 3.2230 40 1 5.8044 -3.0162 4.3040 41 1 6.5314 -0.8764 3.3265 42 1 5.4713 -0.0403 1.2672 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001608177590.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:10 Heat of formation + Delta-G solvation = -65.654377 kcal Electronic energy + Delta-G solvation = -28177.788102 eV Core-core repulsion = 24087.621587 eV Total energy + Delta-G solvation = -4090.166515 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.126 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.01052 -39.73817 -39.27612 -37.94732 -36.29972 -35.14996 -33.70035 -32.28058 -31.81564 -31.57198 -30.16780 -28.19019 -26.56521 -25.49733 -23.66218 -22.95751 -21.89131 -21.48326 -20.92685 -19.45746 -18.38196 -17.63264 -17.20456 -16.73227 -16.23837 -16.18068 -16.14361 -15.94742 -15.42995 -14.93366 -14.69133 -14.38196 -13.97049 -13.92403 -13.77092 -13.59171 -13.07917 -12.77817 -12.69550 -12.58515 -12.54243 -12.09729 -12.00833 -11.79042 -11.73741 -11.19726 -11.12571 -11.06193 -10.52264 -10.30333 -10.12365 -10.02530 -9.90267 -9.55971 -9.54562 -9.10462 -8.75586 -8.59490 -8.17103 -7.85995 -6.37050 -4.39888 0.25020 0.85184 2.11402 2.17196 2.20586 2.63543 3.04201 3.17884 3.19003 3.44328 3.51936 3.92493 4.02665 4.13593 4.35461 4.60292 4.64536 4.66791 4.73909 4.96910 5.16850 5.32282 5.49686 5.52818 5.54524 5.56848 5.66923 5.72229 5.92098 6.02516 6.07827 6.15656 6.20849 6.25416 6.31320 6.36851 6.69749 6.81717 6.91163 7.13726 7.20785 7.22752 7.36538 7.55122 7.74985 7.75664 8.06570 8.20973 8.65939 9.00002 9.20178 10.74070 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.012977 B = 0.003125 C = 0.002886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2157.091787 B = 8959.207686 C = 9701.303480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.877 5.877 2 C 0.083 3.917 3 Si 0.863 3.137 4 H -0.273 1.273 5 H -0.282 1.282 6 H -0.258 1.258 7 C -0.510 4.510 8 H 0.084 0.916 9 C 0.030 3.970 10 H 0.065 0.935 11 C 0.533 3.467 12 O -0.558 6.558 13 N -0.729 5.729 14 C 0.161 3.839 15 C -0.062 4.062 16 C -0.121 4.121 17 C 0.094 3.906 18 N -0.434 5.434 19 C 0.085 3.915 20 C 0.543 3.457 21 O -0.500 6.500 22 O -0.494 6.494 23 C -0.081 4.081 24 C -0.027 4.027 25 C -0.073 4.073 26 C -0.130 4.130 27 C -0.142 4.142 28 C -0.130 4.130 29 C -0.133 4.133 30 H 0.270 0.730 31 H 0.404 0.596 32 H 0.079 0.921 33 H 0.080 0.920 34 H 0.147 0.853 35 H 0.168 0.832 36 H 0.413 0.587 37 H 0.156 0.844 38 H 0.118 0.882 39 H 0.111 0.889 40 H 0.109 0.891 41 H 0.109 0.891 42 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.981 -0.191 -11.156 13.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.512 5.512 2 C -0.122 4.122 3 Si 0.690 3.310 4 H -0.198 1.198 5 H -0.207 1.207 6 H -0.183 1.183 7 C -0.547 4.547 8 H 0.102 0.898 9 C 0.009 3.991 10 H 0.083 0.917 11 C 0.322 3.678 12 O -0.436 6.436 13 N -0.382 5.382 14 C 0.037 3.963 15 C -0.070 4.070 16 C -0.142 4.142 17 C -0.066 4.066 18 N -0.145 5.145 19 C -0.051 4.051 20 C 0.384 3.616 21 O -0.386 6.386 22 O -0.304 6.304 23 C -0.102 4.102 24 C -0.028 4.028 25 C -0.091 4.091 26 C -0.148 4.148 27 C -0.160 4.160 28 C -0.148 4.148 29 C -0.151 4.151 30 H 0.080 0.920 31 H 0.238 0.762 32 H 0.097 0.903 33 H 0.098 0.902 34 H 0.165 0.835 35 H 0.185 0.815 36 H 0.271 0.729 37 H 0.174 0.826 38 H 0.136 0.864 39 H 0.129 0.871 40 H 0.127 0.873 41 H 0.127 0.873 42 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 8.058 -0.592 -11.478 14.036 hybrid contribution -0.322 0.930 0.504 1.106 sum 7.736 0.337 -10.974 13.431 Atomic orbital electron populations 1.69869 1.06226 1.27576 1.47533 1.25057 0.94761 0.98715 0.93703 0.87031 0.80985 0.83997 0.79026 1.19820 1.20747 1.18263 1.20547 0.86582 0.95625 1.51924 0.89797 1.18399 0.98409 0.94895 0.87430 0.91707 1.21566 0.75385 0.87242 0.83572 1.90595 1.42378 1.25762 1.84880 1.45921 1.62161 1.24802 1.05289 1.20098 1.00625 0.94128 0.81448 1.20441 0.93404 0.96394 0.96807 1.22499 1.01263 0.95134 0.95279 1.22869 0.91920 0.97969 0.93878 1.67623 1.03721 1.11101 1.32100 1.19903 0.92576 0.98682 0.93955 1.20450 0.86157 0.76578 0.78388 1.90955 1.53062 1.34884 1.59743 1.84662 1.39627 1.67904 1.38256 1.22139 0.96206 0.97896 0.93927 1.19931 0.92527 0.93656 0.96665 1.20887 0.98297 0.95513 0.94410 1.21043 0.97474 0.99645 0.96627 1.20876 0.99007 0.95981 1.00171 1.20886 1.00439 0.96711 0.96761 1.20990 0.97324 0.99918 0.96900 0.92012 0.76193 0.90298 0.90217 0.83488 0.81483 0.72912 0.82645 0.86370 0.87093 0.87319 0.87252 0.87257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.45 13.96 55.43 0.77 -23.67 16 2 C 0.08 2.14 5.47 -17.82 -0.10 2.04 16 3 Si 0.86 19.01 27.02 -169.99 -4.59 14.42 16 4 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 5 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 6 H -0.26 -5.46 6.72 56.52 0.38 -5.08 16 7 C -0.51 -12.86 8.22 -34.44 -0.28 -13.14 16 8 H 0.08 2.37 7.67 -52.49 -0.40 1.97 16 9 C 0.03 0.66 2.20 -94.07 -0.21 0.46 16 10 H 0.07 1.37 4.58 -51.93 -0.24 1.13 16 11 C 0.53 10.99 6.99 -10.98 -0.08 10.92 16 12 O -0.56 -12.57 15.36 5.56 0.09 -12.49 16 13 N -0.73 -12.40 5.55 -61.47 -0.34 -12.74 16 14 C 0.16 2.19 5.85 -5.20 -0.03 2.16 16 15 C -0.06 -0.73 5.28 -104.35 -0.55 -1.28 16 16 C -0.12 -1.16 9.82 -39.31 -0.39 -1.54 16 17 C 0.09 0.90 11.18 -17.56 -0.20 0.71 16 18 N -0.43 -5.38 10.12 -9.81 -0.10 -5.48 16 19 C 0.08 1.12 6.75 -83.02 -0.56 0.56 16 20 C 0.54 7.14 8.32 34.77 0.29 7.43 16 21 O -0.50 -7.75 17.11 -19.22 -0.33 -8.08 16 22 O -0.49 -5.08 13.24 -40.44 -0.54 -5.62 16 23 C -0.08 -1.05 9.34 -39.04 -0.36 -1.42 16 24 C -0.03 -0.58 4.37 -104.62 -0.46 -1.04 16 25 C -0.07 -1.55 8.23 -39.58 -0.33 -1.87 16 26 C -0.13 -2.37 10.05 -39.58 -0.40 -2.77 16 27 C -0.14 -2.39 10.05 -39.58 -0.40 -2.79 16 28 C -0.13 -2.24 10.05 -39.59 -0.40 -2.63 16 29 C -0.13 -2.59 9.67 -39.59 -0.38 -2.97 16 30 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 31 H 0.40 6.77 8.46 -40.82 -0.35 6.42 16 32 H 0.08 0.99 8.10 -51.93 -0.42 0.57 16 33 H 0.08 1.14 8.10 -51.93 -0.42 0.72 16 34 H 0.15 1.04 8.06 -52.49 -0.42 0.61 16 35 H 0.17 1.04 8.06 -52.48 -0.42 0.62 16 36 H 0.41 2.13 9.11 45.56 0.42 2.54 16 37 H 0.16 2.09 7.64 -52.49 -0.40 1.69 16 38 H 0.12 2.62 7.53 -52.49 -0.40 2.22 16 39 H 0.11 1.73 8.06 -52.48 -0.42 1.31 16 40 H 0.11 1.49 8.06 -52.49 -0.42 1.07 16 41 H 0.11 1.54 8.06 -52.48 -0.42 1.12 16 42 H 0.11 1.96 7.96 -52.49 -0.42 1.54 16 LS Contribution 372.87 15.07 5.62 5.62 Total: -1.00 -33.13 372.87 -8.14 -41.26 By element: Atomic # 1 Polarization: 17.86 SS G_CDS: -3.90 Total: 13.96 kcal Atomic # 6 Polarization: -2.37 SS G_CDS: -4.82 Total: -7.19 kcal Atomic # 7 Polarization: -42.22 SS G_CDS: 0.33 Total: -41.89 kcal Atomic # 8 Polarization: -25.41 SS G_CDS: -0.78 Total: -26.19 kcal Atomic # 14 Polarization: 19.01 SS G_CDS: -4.59 Total: 14.42 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -33.13 -8.14 -41.26 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608177590.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.391 kcal (2) G-P(sol) polarization free energy of solvation -33.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.263 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds