Wall clock time and date at job start Sat Apr 11 2020 05:56:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86795 * 120.00629 * 2 1 4 4 H 1.48498 * 109.47369 * 269.54666 * 3 2 1 5 5 H 1.48504 * 109.46935 * 29.54422 * 3 2 1 6 6 H 1.48496 * 109.47508 * 149.54398 * 3 2 1 7 7 C 1.37882 * 119.99662 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00004 * 352.43278 * 7 2 1 9 9 C 1.50695 * 120.00082 * 172.43186 * 7 2 1 10 10 H 1.09005 * 109.47611 * 354.76592 * 9 7 2 11 11 C 1.50706 * 109.47389 * 234.76822 * 9 7 2 12 12 O 1.21278 * 119.99901 * 249.03838 * 11 9 7 13 13 N 1.34776 * 119.99955 * 69.03059 * 11 9 7 14 14 C 1.46495 * 120.00082 * 180.02562 * 13 11 9 15 15 C 1.50701 * 109.47428 * 180.02562 * 14 13 11 16 16 C 1.38624 * 120.75364 * 89.99641 * 15 14 13 17 17 C 1.38581 * 119.35527 * 179.97438 * 16 15 14 18 18 N 1.31506 * 120.90918 * 0.02562 * 17 16 15 19 19 C 1.32739 * 121.63816 * 359.97438 * 18 17 16 20 20 C 1.48077 * 119.72470 * 180.02562 * 19 18 17 21 21 O 1.21434 * 120.00004 * 180.02562 * 20 19 18 22 22 O 1.34679 * 120.00092 * 0.02562 * 20 19 18 23 23 C 1.38588 * 120.75084 * 269.72224 * 15 14 13 24 24 C 1.50705 * 109.47373 * 114.76639 * 9 7 2 25 25 C 1.38238 * 119.99627 * 51.80961 * 24 9 7 26 26 C 1.38235 * 119.99522 * 179.81361 * 25 24 9 27 27 C 1.38235 * 120.00138 * 0.39159 * 26 25 24 28 28 C 1.38234 * 119.99883 * 359.85892 * 27 26 25 29 29 C 1.38230 * 120.00207 * 359.95582 * 28 27 26 30 30 H 0.97000 * 119.99506 * 359.97438 * 1 2 3 31 31 H 0.97004 * 119.99589 * 0.02562 * 13 11 9 32 32 H 1.09007 * 109.46966 * 300.00085 * 14 13 11 33 33 H 1.08999 * 109.47384 * 60.00210 * 14 13 11 34 34 H 1.07997 * 120.32358 * 0.02562 * 16 15 14 35 35 H 1.08003 * 119.54541 * 179.97438 * 17 16 15 36 36 H 0.96694 * 117.00354 * 180.02562 * 22 20 19 37 37 H 1.07997 * 120.47702 * 359.97438 * 23 15 14 38 38 H 1.07999 * 119.99828 * 359.97438 * 25 24 9 39 39 H 1.08004 * 119.99552 * 180.22531 * 26 25 24 40 40 H 1.07997 * 119.99982 * 179.83783 * 27 26 25 41 41 H 1.08003 * 119.99484 * 179.97438 * 28 27 26 42 42 H 1.08000 * 120.00288 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.5065 2.0408 -1.4000 5 1 1.4420 2.6554 0.6904 6 1 3.5419 1.4428 0.7096 7 6 2.0045 -1.1941 -0.0005 8 1 1.4715 -2.1254 0.1222 9 6 3.5016 -1.1998 -0.1724 10 1 3.8482 -0.1862 -0.3737 11 6 3.8714 -2.0956 -1.3266 12 8 4.4510 -3.1409 -1.1214 13 7 3.5578 -1.7350 -2.5868 14 6 3.9167 -2.6059 -3.7087 15 6 3.4577 -1.9776 -4.9993 16 6 4.2885 -1.1221 -5.7061 17 6 3.8370 -0.5609 -6.8900 18 7 2.6341 -0.8288 -7.3490 19 6 1.8076 -1.6423 -6.7031 20 6 0.4624 -1.9149 -7.2588 21 8 -0.2978 -2.6579 -6.6719 22 8 0.0821 -1.3387 -8.4152 23 6 2.1974 -2.2465 -5.5094 24 6 4.1501 -1.7113 1.0882 25 6 3.7383 -2.9101 1.6399 26 6 4.3358 -3.3811 2.7940 27 6 5.3394 -2.6494 3.4009 28 6 5.7475 -1.4482 2.8520 29 6 5.1528 -0.9790 1.6958 30 1 -0.4849 0.8401 0.0004 31 1 3.0944 -0.8987 -2.7509 32 1 4.9984 -2.7385 -3.7342 33 1 3.4346 -3.5756 -3.5847 34 1 5.2783 -0.8959 -5.3382 35 1 4.4816 0.1064 -7.4429 36 1 -0.8053 -1.5465 -8.7382 37 1 1.5258 -2.9120 -4.9875 38 1 2.9516 -3.4798 1.1677 39 1 4.0166 -4.3195 3.2230 40 1 5.8044 -3.0162 4.3040 41 1 6.5314 -0.8764 3.3265 42 1 5.4713 -0.0403 1.2672 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001608177590.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:09 Heat of formation + Delta-G solvation = -88.960937 kcal Electronic energy + Delta-G solvation = -28178.798750 eV Core-core repulsion = 24087.621587 eV Total energy + Delta-G solvation = -4091.177164 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.126 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.96492 -41.02175 -40.52203 -39.40096 -37.26355 -36.39516 -35.52605 -33.58674 -33.23966 -32.70946 -31.61128 -29.70967 -27.84989 -26.48459 -25.38851 -23.92331 -23.35476 -22.66282 -22.18558 -21.00953 -19.39591 -19.13663 -18.68166 -17.86596 -17.71052 -17.44619 -17.06599 -16.96574 -16.76274 -16.37552 -15.98525 -15.76096 -15.36104 -15.31854 -14.83440 -14.79044 -14.50805 -14.36686 -14.14177 -13.87253 -13.76062 -13.56419 -13.37112 -12.97352 -12.87374 -12.76132 -12.70973 -12.10752 -12.04478 -11.92035 -11.71621 -11.40780 -11.18451 -10.87029 -10.80442 -10.52244 -10.41747 -10.03224 -9.62489 -9.36104 -8.36589 -6.44777 -0.67277 -0.06683 0.66172 0.72224 1.23462 1.30908 1.38826 1.47240 1.76020 1.84659 2.28406 2.38838 2.75503 2.98836 3.11552 3.17827 3.42283 3.72424 3.78807 3.84861 4.09395 4.22953 4.26470 4.33457 4.37910 4.42160 4.45511 4.51822 4.59831 4.66591 4.72371 4.85111 4.90522 5.10340 5.20376 5.33994 5.34723 5.38614 5.43203 5.51645 5.71899 5.76161 5.95058 6.19808 6.32375 6.52983 6.58139 6.60820 6.88985 7.19205 7.40230 8.78514 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.012977 B = 0.003125 C = 0.002886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2157.091787 B = 8959.207686 C = 9701.303480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.030 3.970 3 Si 0.925 3.075 4 H -0.247 1.247 5 H -0.289 1.289 6 H -0.238 1.238 7 C -0.504 4.504 8 H 0.031 0.969 9 C 0.032 3.968 10 H 0.078 0.922 11 C 0.531 3.469 12 O -0.582 6.582 13 N -0.720 5.720 14 C 0.163 3.837 15 C -0.069 4.069 16 C -0.100 4.100 17 C 0.101 3.899 18 N -0.447 5.447 19 C 0.065 3.935 20 C 0.545 3.455 21 O -0.536 6.536 22 O -0.488 6.488 23 C -0.095 4.095 24 C -0.058 4.058 25 C -0.105 4.105 26 C -0.135 4.135 27 C -0.135 4.135 28 C -0.124 4.124 29 C -0.146 4.146 30 H 0.270 0.730 31 H 0.406 0.594 32 H 0.099 0.901 33 H 0.065 0.935 34 H 0.183 0.817 35 H 0.210 0.790 36 H 0.433 0.567 37 H 0.136 0.864 38 H 0.086 0.914 39 H 0.132 0.868 40 H 0.149 0.851 41 H 0.150 0.850 42 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.927 2.073 -11.338 16.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.170 4.170 3 Si 0.747 3.253 4 H -0.171 1.171 5 H -0.215 1.215 6 H -0.162 1.162 7 C -0.541 4.541 8 H 0.050 0.950 9 C 0.010 3.990 10 H 0.096 0.904 11 C 0.320 3.680 12 O -0.462 6.462 13 N -0.371 5.371 14 C 0.040 3.960 15 C -0.077 4.077 16 C -0.120 4.120 17 C -0.060 4.060 18 N -0.158 5.158 19 C -0.069 4.069 20 C 0.388 3.612 21 O -0.426 6.426 22 O -0.300 6.300 23 C -0.116 4.116 24 C -0.058 4.058 25 C -0.123 4.123 26 C -0.153 4.153 27 C -0.153 4.153 28 C -0.141 4.141 29 C -0.164 4.164 30 H 0.080 0.920 31 H 0.240 0.760 32 H 0.117 0.883 33 H 0.083 0.917 34 H 0.200 0.800 35 H 0.227 0.773 36 H 0.295 0.705 37 H 0.154 0.846 38 H 0.104 0.896 39 H 0.149 0.851 40 H 0.167 0.833 41 H 0.168 0.832 42 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 11.998 1.665 -11.718 16.853 hybrid contribution -1.515 0.129 0.546 1.615 sum 10.483 1.794 -11.172 15.425 Atomic orbital electron populations 1.70029 1.08344 1.28563 1.49902 1.25889 0.95366 1.02576 0.93143 0.86039 0.80079 0.78610 0.80552 1.17107 1.21482 1.16164 1.20475 0.88621 0.93671 1.51382 0.95037 1.18337 0.95889 0.95997 0.88752 0.90386 1.21291 0.75557 0.86694 0.84476 1.90570 1.43774 1.26419 1.85433 1.45856 1.60967 1.25070 1.05229 1.20185 1.01630 0.93025 0.81135 1.20268 0.93459 0.97641 0.96349 1.22867 1.01968 0.92796 0.94396 1.23606 0.91176 0.97427 0.93774 1.67668 1.04780 1.11025 1.32376 1.19897 0.93027 0.99717 0.94293 1.20569 0.86098 0.75923 0.78588 1.90935 1.54124 1.36622 1.60896 1.84615 1.41351 1.67135 1.36916 1.22064 0.96792 0.98301 0.94400 1.20000 0.94387 0.94567 0.96895 1.20837 0.98952 0.96208 0.96330 1.21339 0.97655 1.00710 0.95613 1.21353 0.97666 0.95404 1.00888 1.21370 1.00382 0.96794 0.95584 1.21265 0.96927 1.00379 0.97792 0.92045 0.75974 0.88258 0.91710 0.79980 0.77345 0.70493 0.84574 0.89615 0.85056 0.83285 0.83229 0.85592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.47 13.96 21.45 0.30 -54.17 16 2 C 0.03 1.62 5.47 84.66 0.46 2.08 16 3 Si 0.92 38.69 27.02 68.60 1.85 40.54 16 4 H -0.25 -9.28 7.11 99.48 0.71 -8.58 16 5 H -0.29 -12.38 7.11 99.48 0.71 -11.67 16 6 H -0.24 -9.14 6.72 99.48 0.67 -8.47 16 7 C -0.50 -26.83 8.22 25.60 0.21 -26.62 16 8 H 0.03 1.95 7.67 -2.91 -0.02 1.93 16 9 C 0.03 1.41 2.20 -13.03 -0.03 1.39 16 10 H 0.08 3.19 4.58 -2.38 -0.01 3.18 16 11 C 0.53 22.39 6.99 87.66 0.61 23.01 16 12 O -0.58 -26.96 15.36 -3.02 -0.05 -27.00 16 13 N -0.72 -24.63 5.55 -466.79 -2.59 -27.22 16 14 C 0.16 4.40 5.85 85.63 0.50 4.90 16 15 C -0.07 -1.57 5.28 -19.69 -0.10 -1.67 16 16 C -0.10 -1.57 9.82 22.44 0.22 -1.35 16 17 C 0.10 1.58 11.18 84.82 0.95 2.53 16 18 N -0.45 -10.27 10.12 -184.94 -1.87 -12.14 16 19 C 0.07 1.74 6.75 41.89 0.28 2.02 16 20 C 0.54 14.79 8.32 70.43 0.59 15.37 16 21 O -0.54 -17.67 17.11 20.05 0.34 -17.33 16 22 O -0.49 -9.84 13.24 -55.88 -0.74 -10.58 16 23 C -0.09 -2.55 9.34 22.62 0.21 -2.34 16 24 C -0.06 -2.51 4.37 -19.86 -0.09 -2.59 16 25 C -0.10 -4.62 8.23 22.27 0.18 -4.44 16 26 C -0.14 -4.84 10.05 22.27 0.22 -4.62 16 27 C -0.14 -4.09 10.05 22.27 0.22 -3.86 16 28 C -0.12 -3.77 10.05 22.27 0.22 -3.55 16 29 C -0.15 -5.33 9.67 22.27 0.22 -5.11 16 30 H 0.27 14.81 8.31 -92.71 -0.77 14.04 16 31 H 0.41 13.52 8.46 -92.71 -0.78 12.73 16 32 H 0.10 2.31 8.10 -2.38 -0.02 2.29 16 33 H 0.06 1.95 8.10 -2.39 -0.02 1.93 16 34 H 0.18 1.61 8.06 -2.91 -0.02 1.59 16 35 H 0.21 1.48 8.06 -2.91 -0.02 1.46 16 36 H 0.43 4.26 9.11 -74.06 -0.67 3.59 16 37 H 0.14 4.09 7.64 -2.91 -0.02 4.07 16 38 H 0.09 4.19 7.53 -2.91 -0.02 4.16 16 39 H 0.13 3.99 8.06 -2.91 -0.02 3.97 16 40 H 0.15 3.30 8.06 -2.91 -0.02 3.28 16 41 H 0.15 3.35 8.06 -2.91 -0.02 3.33 16 42 H 0.13 4.08 7.96 -2.91 -0.02 4.06 16 Total: -1.00 -77.57 372.87 1.73 -75.84 By element: Atomic # 1 Polarization: 37.30 SS G_CDS: -0.40 Total: 36.90 kcal Atomic # 6 Polarization: -9.73 SS G_CDS: 4.89 Total: -4.85 kcal Atomic # 7 Polarization: -89.36 SS G_CDS: -4.16 Total: -93.52 kcal Atomic # 8 Polarization: -54.47 SS G_CDS: -0.44 Total: -54.91 kcal Atomic # 14 Polarization: 38.69 SS G_CDS: 1.85 Total: 40.54 kcal Total: -77.57 1.73 -75.84 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608177590.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.120 kcal (2) G-P(sol) polarization free energy of solvation -77.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.841 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds