Wall clock time and date at job start Sat Apr 11 2020 05:56:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86798 * 120.00083 * 2 1 4 4 H 1.48510 * 109.47186 * 264.81740 * 3 2 1 5 5 H 1.48492 * 109.47200 * 24.81753 * 3 2 1 6 6 H 1.48500 * 109.47448 * 144.82177 * 3 2 1 7 7 C 1.37884 * 120.00194 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99542 * 353.51316 * 7 2 1 9 9 C 1.50700 * 120.00024 * 173.51309 * 7 2 1 10 10 H 1.08999 * 109.47213 * 33.99271 * 9 7 2 11 11 C 1.50701 * 109.46879 * 153.98488 * 9 7 2 12 12 O 1.21281 * 119.99871 * 119.99721 * 11 9 7 13 13 N 1.34781 * 120.00109 * 300.00288 * 11 9 7 14 14 C 1.46505 * 119.99700 * 179.97438 * 13 11 9 15 15 C 1.50699 * 109.46889 * 179.97438 * 14 13 11 16 16 C 1.38627 * 120.75557 * 89.99786 * 15 14 13 17 17 C 1.38577 * 119.36111 * 179.72245 * 16 15 14 18 18 N 1.31506 * 120.90512 * 0.02562 * 17 16 15 19 19 C 1.32747 * 121.64355 * 359.97438 * 18 17 16 20 20 C 1.48068 * 119.72905 * 180.02562 * 19 18 17 21 21 O 1.21426 * 120.00402 * 180.02562 * 20 19 18 22 22 O 1.34677 * 119.99875 * 359.97438 * 20 19 18 23 23 C 1.38593 * 120.75721 * 269.71971 * 15 14 13 24 24 C 1.50699 * 109.47106 * 273.98545 * 9 7 2 25 25 C 1.38232 * 119.99896 * 305.81158 * 24 9 7 26 26 C 1.38234 * 119.99876 * 179.78571 * 25 24 9 27 27 C 1.38242 * 119.99708 * 0.45021 * 26 25 24 28 28 C 1.38230 * 120.00130 * 359.80433 * 27 26 25 29 29 C 1.38230 * 119.99694 * 126.09228 * 24 9 7 30 30 H 0.96993 * 120.00235 * 0.02562 * 1 2 3 31 31 H 0.96992 * 120.00206 * 359.97438 * 13 11 9 32 32 H 1.09001 * 109.47262 * 60.00103 * 14 13 11 33 33 H 1.08994 * 109.47190 * 299.99723 * 14 13 11 34 34 H 1.08001 * 120.31691 * 359.75283 * 16 15 14 35 35 H 1.08001 * 119.54981 * 179.97438 * 17 16 15 36 36 H 0.96699 * 117.00380 * 180.02562 * 22 20 19 37 37 H 1.08002 * 120.46722 * 0.25483 * 23 15 14 38 38 H 1.07998 * 120.00441 * 0.02562 * 25 24 9 39 39 H 1.07998 * 120.00412 * 180.27890 * 26 25 24 40 40 H 1.08003 * 119.99360 * 179.83340 * 27 26 25 41 41 H 1.07994 * 120.00211 * 179.97438 * 28 27 26 42 42 H 1.08003 * 120.00328 * 359.97438 * 29 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.6062 1.9832 -1.3944 5 1 1.3962 2.6817 0.5876 6 1 3.4877 1.4743 0.8066 7 6 2.0045 -1.1941 -0.0005 8 1 1.4697 -2.1264 0.1047 9 6 3.5043 -1.1982 -0.1480 10 1 3.9197 -0.3162 0.3396 11 6 4.0687 -2.4395 0.4937 12 8 4.7017 -3.2317 -0.1716 13 7 3.8699 -2.6693 1.8068 14 6 4.4182 -3.8763 2.4303 15 6 4.0578 -3.8938 3.8935 16 6 2.8837 -4.4897 4.3273 17 6 2.5837 -4.4942 5.6802 18 7 3.3962 -3.9415 6.5541 19 6 4.5299 -3.3607 6.1807 20 6 5.4138 -2.7518 7.2008 21 8 6.4517 -2.2188 6.8647 22 8 5.0659 -2.7883 8.5013 23 6 4.8953 -3.3195 4.8366 24 6 3.8653 -1.1804 -1.6110 25 6 3.3469 -2.1380 -2.4625 26 6 3.6744 -2.1190 -3.8053 27 6 4.5279 -1.1479 -4.2949 28 6 5.0504 -0.1935 -3.4424 29 6 4.7194 -0.2099 -2.1003 30 1 -0.4850 0.8400 -0.0004 31 1 3.3640 -2.0356 2.3389 32 1 5.5030 -3.8797 2.3237 33 1 4.0024 -4.7580 1.9428 34 1 2.2097 -4.9464 3.6178 35 1 1.6696 -4.9572 6.0215 36 1 5.6746 -2.3774 9.1303 37 1 5.8181 -2.8469 4.5341 38 1 2.6828 -2.8987 -2.0794 39 1 3.2659 -2.8645 -4.4714 40 1 4.7859 -1.1347 -5.3435 41 1 5.7175 0.5649 -3.8247 42 1 5.1277 0.5359 -1.4343 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001608177591.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:13 Heat of formation + Delta-G solvation = -65.308424 kcal Electronic energy + Delta-G solvation = -28088.819032 eV Core-core repulsion = 23998.667518 eV Total energy + Delta-G solvation = -4090.151514 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.126 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.06253 -39.80395 -39.30999 -37.95198 -36.39234 -35.18363 -33.70970 -32.31638 -31.84930 -31.51214 -30.13881 -28.19461 -26.55860 -25.54602 -23.65155 -22.98272 -21.87071 -21.52105 -20.95907 -19.47958 -18.45245 -17.67601 -17.18115 -16.75532 -16.24199 -16.19232 -16.15284 -16.02515 -15.45770 -14.96863 -14.61365 -14.45662 -13.97526 -13.93429 -13.79574 -13.65916 -13.10226 -12.74570 -12.66148 -12.61064 -12.50253 -12.15372 -11.96990 -11.84686 -11.83104 -11.19610 -11.15343 -11.02247 -10.47463 -10.37484 -10.16227 -9.96047 -9.92728 -9.60272 -9.57070 -8.99553 -8.79540 -8.63526 -8.13657 -7.83778 -6.35001 -4.39812 0.21758 0.81703 2.11663 2.15204 2.21321 2.56435 3.14316 3.20324 3.25262 3.41096 3.46334 3.89107 3.99390 4.19535 4.35021 4.60504 4.62472 4.64422 4.70854 4.96989 5.16059 5.30752 5.46580 5.49861 5.54758 5.59559 5.65474 5.72519 5.91754 5.99781 6.01795 6.12150 6.22893 6.26601 6.29913 6.44835 6.72240 6.83258 6.88143 7.15941 7.23267 7.24843 7.32568 7.57903 7.67931 7.78746 8.05990 8.17184 8.63012 8.94949 9.23386 10.75802 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.012945 B = 0.002952 C = 0.002798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2162.491954 B = 9481.268869 C =10004.444748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.089 3.911 3 Si 0.862 3.138 4 H -0.264 1.264 5 H -0.285 1.285 6 H -0.263 1.263 7 C -0.515 4.515 8 H 0.082 0.918 9 C 0.023 3.977 10 H 0.069 0.931 11 C 0.540 3.460 12 O -0.556 6.556 13 N -0.727 5.727 14 C 0.160 3.840 15 C -0.062 4.062 16 C -0.114 4.114 17 C 0.097 3.903 18 N -0.433 5.433 19 C 0.081 3.919 20 C 0.545 3.455 21 O -0.505 6.505 22 O -0.493 6.493 23 C -0.086 4.086 24 C -0.030 4.030 25 C -0.070 4.070 26 C -0.130 4.130 27 C -0.142 4.142 28 C -0.129 4.129 29 C -0.136 4.136 30 H 0.269 0.731 31 H 0.408 0.592 32 H 0.078 0.922 33 H 0.081 0.919 34 H 0.150 0.850 35 H 0.170 0.830 36 H 0.412 0.588 37 H 0.153 0.847 38 H 0.118 0.882 39 H 0.111 0.889 40 H 0.109 0.891 41 H 0.109 0.891 42 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.037 -6.136 9.412 13.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.116 4.116 3 Si 0.689 3.311 4 H -0.189 1.189 5 H -0.211 1.211 6 H -0.188 1.188 7 C -0.553 4.553 8 H 0.100 0.900 9 C 0.001 3.999 10 H 0.087 0.913 11 C 0.329 3.671 12 O -0.434 6.434 13 N -0.381 5.381 14 C 0.037 3.963 15 C -0.071 4.071 16 C -0.134 4.134 17 C -0.063 4.063 18 N -0.145 5.145 19 C -0.055 4.055 20 C 0.387 3.613 21 O -0.393 6.393 22 O -0.303 6.303 23 C -0.107 4.107 24 C -0.031 4.031 25 C -0.088 4.088 26 C -0.148 4.148 27 C -0.160 4.160 28 C -0.147 4.147 29 C -0.154 4.154 30 H 0.079 0.921 31 H 0.243 0.757 32 H 0.096 0.904 33 H 0.099 0.901 34 H 0.168 0.832 35 H 0.187 0.813 36 H 0.271 0.729 37 H 0.170 0.830 38 H 0.136 0.864 39 H 0.129 0.871 40 H 0.127 0.873 41 H 0.127 0.873 42 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 7.147 -6.613 9.463 13.578 hybrid contribution 0.552 1.591 -0.221 1.698 sum 7.699 -5.023 9.242 13.035 Atomic orbital electron populations 1.69856 1.06209 1.27576 1.47950 1.24927 0.94660 0.98768 0.93290 0.87023 0.80252 0.83977 0.79838 1.18912 1.21095 1.18818 1.20500 0.86699 0.95374 1.52688 0.89950 1.18509 0.98814 0.93081 0.89483 0.91313 1.21097 0.77263 0.88168 0.80578 1.90613 1.41383 1.48832 1.62586 1.45918 1.57655 1.23936 1.10558 1.20103 0.99748 0.90428 0.86054 1.20423 0.94154 0.96154 0.96330 1.22566 0.96228 0.96861 0.97747 1.22911 0.98381 0.96017 0.89023 1.67630 1.02065 1.05750 1.39050 1.19872 0.93726 1.01355 0.90508 1.20472 0.83197 0.75843 0.81808 1.90927 1.24554 1.41878 1.81931 1.84679 1.53813 1.74404 1.17393 1.22061 1.00808 0.96454 0.91385 1.20059 0.92708 0.93494 0.96812 1.20835 0.97726 0.97886 0.92371 1.21038 0.99114 0.98904 0.95744 1.20869 0.99775 0.96631 0.98752 1.20878 1.00962 0.99084 0.93809 1.20971 0.99261 0.99633 0.95529 0.92078 0.75713 0.90414 0.90110 0.83182 0.81311 0.72930 0.82971 0.86444 0.87103 0.87319 0.87273 0.87470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.39 13.96 55.43 0.77 -23.62 16 2 C 0.09 2.30 5.47 -17.82 -0.10 2.20 16 3 Si 0.86 19.66 26.74 -169.99 -4.55 15.11 16 4 H -0.26 -6.11 7.11 56.52 0.40 -5.71 16 5 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 6 H -0.26 -5.60 6.31 56.52 0.36 -5.25 16 7 C -0.52 -12.70 8.03 -34.44 -0.28 -12.98 16 8 H 0.08 2.21 8.05 -52.49 -0.42 1.79 16 9 C 0.02 0.49 1.89 -94.08 -0.18 0.32 16 10 H 0.07 1.49 5.15 -51.93 -0.27 1.22 16 11 C 0.54 10.92 7.04 -10.98 -0.08 10.84 16 12 O -0.56 -12.34 15.41 5.56 0.09 -12.25 16 13 N -0.73 -11.90 5.45 -61.47 -0.33 -12.23 16 14 C 0.16 2.09 5.85 -5.19 -0.03 2.06 16 15 C -0.06 -0.70 5.28 -104.35 -0.55 -1.25 16 16 C -0.11 -1.11 9.82 -39.31 -0.39 -1.50 16 17 C 0.10 0.94 11.18 -17.57 -0.20 0.74 16 18 N -0.43 -5.17 10.12 -9.81 -0.10 -5.27 16 19 C 0.08 0.99 6.75 -83.03 -0.56 0.43 16 20 C 0.54 6.45 8.32 34.76 0.29 6.73 16 21 O -0.51 -6.95 17.11 -19.21 -0.33 -7.28 16 22 O -0.49 -4.57 13.24 -40.43 -0.54 -5.10 16 23 C -0.09 -1.00 9.34 -39.04 -0.36 -1.37 16 24 C -0.03 -0.65 3.95 -104.63 -0.41 -1.06 16 25 C -0.07 -1.50 8.29 -39.58 -0.33 -1.83 16 26 C -0.13 -2.43 10.05 -39.58 -0.40 -2.83 16 27 C -0.14 -2.48 10.05 -39.58 -0.40 -2.88 16 28 C -0.13 -2.33 10.05 -39.58 -0.40 -2.73 16 29 C -0.14 -2.74 9.26 -39.58 -0.37 -3.11 16 30 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 31 H 0.41 6.51 8.35 -40.82 -0.34 6.17 16 32 H 0.08 1.00 8.10 -51.93 -0.42 0.58 16 33 H 0.08 1.04 8.10 -51.93 -0.42 0.62 16 34 H 0.15 1.23 8.06 -52.49 -0.42 0.81 16 35 H 0.17 1.12 8.06 -52.49 -0.42 0.70 16 36 H 0.41 1.68 9.11 45.56 0.42 2.10 16 37 H 0.15 1.71 7.64 -52.49 -0.40 1.31 16 38 H 0.12 2.59 7.90 -52.49 -0.41 2.18 16 39 H 0.11 1.77 8.06 -52.49 -0.42 1.34 16 40 H 0.11 1.55 8.06 -52.48 -0.42 1.13 16 41 H 0.11 1.63 8.06 -52.49 -0.42 1.21 16 42 H 0.11 2.01 7.96 -52.48 -0.42 1.59 16 LS Contribution 372.11 15.07 5.61 5.61 Total: -1.00 -32.77 372.11 -8.09 -40.86 By element: Atomic # 1 Polarization: 16.37 SS G_CDS: -3.98 Total: 12.39 kcal Atomic # 6 Polarization: -3.49 SS G_CDS: -4.73 Total: -8.21 kcal Atomic # 7 Polarization: -41.46 SS G_CDS: 0.34 Total: -41.12 kcal Atomic # 8 Polarization: -23.85 SS G_CDS: -0.78 Total: -24.63 kcal Atomic # 14 Polarization: 19.66 SS G_CDS: -4.55 Total: 15.11 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -32.77 -8.09 -40.86 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608177591.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.450 kcal (2) G-P(sol) polarization free energy of solvation -32.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.858 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds