Wall clock time and date at job start Sat Apr 11 2020 05:56:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86798 * 120.00083 * 2 1 4 4 H 1.48510 * 109.47186 * 264.81740 * 3 2 1 5 5 H 1.48492 * 109.47200 * 24.81753 * 3 2 1 6 6 H 1.48500 * 109.47448 * 144.82177 * 3 2 1 7 7 C 1.37884 * 120.00194 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99542 * 353.51316 * 7 2 1 9 9 C 1.50700 * 120.00024 * 173.51309 * 7 2 1 10 10 H 1.08999 * 109.47213 * 33.99271 * 9 7 2 11 11 C 1.50701 * 109.46879 * 153.98488 * 9 7 2 12 12 O 1.21281 * 119.99871 * 119.99721 * 11 9 7 13 13 N 1.34781 * 120.00109 * 300.00288 * 11 9 7 14 14 C 1.46505 * 119.99700 * 179.97438 * 13 11 9 15 15 C 1.50699 * 109.46889 * 179.97438 * 14 13 11 16 16 C 1.38627 * 120.75557 * 89.99786 * 15 14 13 17 17 C 1.38577 * 119.36111 * 179.72245 * 16 15 14 18 18 N 1.31506 * 120.90512 * 0.02562 * 17 16 15 19 19 C 1.32747 * 121.64355 * 359.97438 * 18 17 16 20 20 C 1.48068 * 119.72905 * 180.02562 * 19 18 17 21 21 O 1.21426 * 120.00402 * 180.02562 * 20 19 18 22 22 O 1.34677 * 119.99875 * 359.97438 * 20 19 18 23 23 C 1.38593 * 120.75721 * 269.71971 * 15 14 13 24 24 C 1.50699 * 109.47106 * 273.98545 * 9 7 2 25 25 C 1.38232 * 119.99896 * 305.81158 * 24 9 7 26 26 C 1.38234 * 119.99876 * 179.78571 * 25 24 9 27 27 C 1.38242 * 119.99708 * 0.45021 * 26 25 24 28 28 C 1.38230 * 120.00130 * 359.80433 * 27 26 25 29 29 C 1.38230 * 119.99694 * 126.09228 * 24 9 7 30 30 H 0.96993 * 120.00235 * 0.02562 * 1 2 3 31 31 H 0.96992 * 120.00206 * 359.97438 * 13 11 9 32 32 H 1.09001 * 109.47262 * 60.00103 * 14 13 11 33 33 H 1.08994 * 109.47190 * 299.99723 * 14 13 11 34 34 H 1.08001 * 120.31691 * 359.75283 * 16 15 14 35 35 H 1.08001 * 119.54981 * 179.97438 * 17 16 15 36 36 H 0.96699 * 117.00380 * 180.02562 * 22 20 19 37 37 H 1.08002 * 120.46722 * 0.25483 * 23 15 14 38 38 H 1.07998 * 120.00441 * 0.02562 * 25 24 9 39 39 H 1.07998 * 120.00412 * 180.27890 * 26 25 24 40 40 H 1.08003 * 119.99360 * 179.83340 * 27 26 25 41 41 H 1.07994 * 120.00211 * 179.97438 * 28 27 26 42 42 H 1.08003 * 120.00328 * 359.97438 * 29 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.6062 1.9832 -1.3944 5 1 1.3962 2.6817 0.5876 6 1 3.4877 1.4743 0.8066 7 6 2.0045 -1.1941 -0.0005 8 1 1.4697 -2.1264 0.1047 9 6 3.5043 -1.1982 -0.1480 10 1 3.9197 -0.3162 0.3396 11 6 4.0687 -2.4395 0.4937 12 8 4.7017 -3.2317 -0.1716 13 7 3.8699 -2.6693 1.8068 14 6 4.4182 -3.8763 2.4303 15 6 4.0578 -3.8938 3.8935 16 6 2.8837 -4.4897 4.3273 17 6 2.5837 -4.4942 5.6802 18 7 3.3962 -3.9415 6.5541 19 6 4.5299 -3.3607 6.1807 20 6 5.4138 -2.7518 7.2008 21 8 6.4517 -2.2188 6.8647 22 8 5.0659 -2.7883 8.5013 23 6 4.8953 -3.3195 4.8366 24 6 3.8653 -1.1804 -1.6110 25 6 3.3469 -2.1380 -2.4625 26 6 3.6744 -2.1190 -3.8053 27 6 4.5279 -1.1479 -4.2949 28 6 5.0504 -0.1935 -3.4424 29 6 4.7194 -0.2099 -2.1003 30 1 -0.4850 0.8400 -0.0004 31 1 3.3640 -2.0356 2.3389 32 1 5.5030 -3.8797 2.3237 33 1 4.0024 -4.7580 1.9428 34 1 2.2097 -4.9464 3.6178 35 1 1.6696 -4.9572 6.0215 36 1 5.6746 -2.3774 9.1303 37 1 5.8181 -2.8469 4.5341 38 1 2.6828 -2.8987 -2.0794 39 1 3.2659 -2.8645 -4.4714 40 1 4.7859 -1.1347 -5.3435 41 1 5.7175 0.5649 -3.8247 42 1 5.1277 0.5359 -1.4343 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001608177591.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:12 Heat of formation + Delta-G solvation = -87.581725 kcal Electronic energy + Delta-G solvation = -28089.784874 eV Core-core repulsion = 23998.667518 eV Total energy + Delta-G solvation = -4091.117357 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.126 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.95057 -41.03350 -40.50917 -39.41291 -37.23666 -36.39281 -35.52082 -33.58438 -33.19318 -32.69922 -31.61726 -29.70331 -27.81856 -26.45891 -25.36530 -23.92516 -23.35862 -22.67636 -22.17731 -21.00993 -19.34896 -19.08768 -18.68021 -17.83973 -17.71054 -17.43052 -17.06094 -16.94495 -16.75229 -16.40930 -15.97245 -15.77272 -15.42132 -15.28758 -14.86404 -14.74553 -14.47994 -14.29362 -14.15491 -13.91804 -13.71294 -13.57540 -13.41971 -12.99074 -12.91659 -12.73989 -12.67662 -12.08066 -12.04124 -12.00050 -11.64084 -11.41511 -11.17967 -10.85245 -10.79788 -10.50273 -10.40979 -10.02890 -9.63061 -9.36703 -8.34550 -6.41416 -0.65547 -0.06212 0.65130 0.71747 1.24997 1.33351 1.38614 1.42001 1.77899 1.83861 2.30407 2.38405 2.76321 2.96911 3.12084 3.18146 3.43670 3.74063 3.80237 3.85210 4.10364 4.21104 4.26159 4.33982 4.34526 4.40153 4.46067 4.59911 4.62507 4.65711 4.73024 4.82443 4.91766 5.11010 5.19943 5.33162 5.36360 5.40395 5.43183 5.52126 5.70475 5.74957 5.95685 6.19966 6.30835 6.53744 6.60430 6.62048 6.91720 7.24156 7.39041 8.79432 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.012945 B = 0.002952 C = 0.002798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2162.491954 B = 9481.268869 C =10004.444748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.043 3.957 3 Si 0.911 3.089 4 H -0.266 1.266 5 H -0.287 1.287 6 H -0.239 1.239 7 C -0.499 4.499 8 H 0.047 0.953 9 C 0.022 3.978 10 H 0.073 0.927 11 C 0.538 3.462 12 O -0.579 6.579 13 N -0.717 5.717 14 C 0.163 3.837 15 C -0.067 4.067 16 C -0.106 4.106 17 C 0.100 3.900 18 N -0.447 5.447 19 C 0.065 3.935 20 C 0.549 3.451 21 O -0.532 6.532 22 O -0.490 6.490 23 C -0.088 4.088 24 C -0.057 4.057 25 C -0.100 4.100 26 C -0.134 4.134 27 C -0.137 4.137 28 C -0.127 4.127 29 C -0.154 4.154 30 H 0.269 0.731 31 H 0.410 0.590 32 H 0.081 0.919 33 H 0.084 0.916 34 H 0.168 0.832 35 H 0.202 0.798 36 H 0.434 0.566 37 H 0.151 0.849 38 H 0.094 0.906 39 H 0.135 0.865 40 H 0.149 0.851 41 H 0.146 0.854 42 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.254 -5.735 9.082 13.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.158 4.158 3 Si 0.736 3.264 4 H -0.190 1.190 5 H -0.213 1.213 6 H -0.163 1.163 7 C -0.537 4.537 8 H 0.065 0.935 9 C 0.001 3.999 10 H 0.091 0.909 11 C 0.326 3.674 12 O -0.459 6.459 13 N -0.369 5.369 14 C 0.040 3.960 15 C -0.075 4.075 16 C -0.127 4.127 17 C -0.060 4.060 18 N -0.159 5.159 19 C -0.070 4.070 20 C 0.392 3.608 21 O -0.422 6.422 22 O -0.302 6.302 23 C -0.109 4.109 24 C -0.058 4.058 25 C -0.118 4.118 26 C -0.152 4.152 27 C -0.155 4.155 28 C -0.145 4.145 29 C -0.172 4.172 30 H 0.078 0.922 31 H 0.245 0.755 32 H 0.099 0.901 33 H 0.102 0.898 34 H 0.186 0.814 35 H 0.219 0.781 36 H 0.296 0.704 37 H 0.169 0.831 38 H 0.112 0.888 39 H 0.153 0.847 40 H 0.167 0.833 41 H 0.164 0.836 42 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 8.389 -6.221 9.196 13.915 hybrid contribution 0.151 1.340 -0.120 1.354 sum 8.540 -4.881 9.075 13.384 Atomic orbital electron populations 1.69976 1.07824 1.28258 1.50454 1.25567 0.95132 1.01820 0.93276 0.86226 0.80031 0.80158 0.79993 1.19047 1.21264 1.16266 1.20463 0.88265 0.93783 1.51149 0.93463 1.18455 0.96736 0.94164 0.90542 0.90892 1.20825 0.77303 0.87584 0.81646 1.90589 1.42639 1.49279 1.63428 1.45848 1.56715 1.24877 1.09453 1.20183 0.99815 0.88896 0.87076 1.20232 0.95002 0.97250 0.95011 1.22810 0.95631 0.95842 0.98377 1.23461 0.98860 0.95029 0.88645 1.67668 1.02243 1.06167 1.39826 1.19992 0.94216 1.02059 0.90767 1.20451 0.82660 0.75247 0.82453 1.90911 1.25607 1.43202 1.82460 1.84632 1.54477 1.74289 1.16827 1.22060 1.00877 0.96490 0.91486 1.20102 0.94441 0.94804 0.96440 1.20844 0.98785 0.98124 0.94082 1.21373 0.99083 0.99897 0.94849 1.21345 0.98172 0.95259 1.00701 1.21348 1.00616 0.99675 0.92887 1.21239 0.99359 0.99489 0.97109 0.92181 0.75481 0.90075 0.89780 0.81442 0.78089 0.70426 0.83099 0.88797 0.84709 0.83328 0.83648 0.86340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -52.85 13.96 21.45 0.30 -52.55 16 2 C 0.04 2.25 5.47 84.66 0.46 2.71 16 3 Si 0.91 40.22 26.74 68.60 1.83 42.06 16 4 H -0.27 -11.73 7.11 99.48 0.71 -11.03 16 5 H -0.29 -12.62 7.11 99.48 0.71 -11.92 16 6 H -0.24 -9.49 6.31 99.48 0.63 -8.87 16 7 C -0.50 -25.33 8.03 25.60 0.21 -25.12 16 8 H 0.05 2.67 8.05 -2.91 -0.02 2.65 16 9 C 0.02 0.99 1.89 -13.03 -0.02 0.97 16 10 H 0.07 3.11 5.15 -2.39 -0.01 3.10 16 11 C 0.54 22.07 7.04 87.66 0.62 22.69 16 12 O -0.58 -26.09 15.41 -3.03 -0.05 -26.13 16 13 N -0.72 -23.58 5.45 -466.78 -2.54 -26.13 16 14 C 0.16 4.20 5.85 85.63 0.50 4.70 16 15 C -0.07 -1.45 5.28 -19.69 -0.10 -1.55 16 16 C -0.11 -1.92 9.82 22.44 0.22 -1.70 16 17 C 0.10 1.74 11.18 84.82 0.95 2.69 16 18 N -0.45 -10.06 10.12 -184.96 -1.87 -11.93 16 19 C 0.06 1.54 6.75 41.88 0.28 1.82 16 20 C 0.55 12.70 8.32 70.43 0.59 13.29 16 21 O -0.53 -14.55 17.11 20.07 0.34 -14.21 16 22 O -0.49 -8.50 13.24 -55.86 -0.74 -9.24 16 23 C -0.09 -2.02 9.34 22.62 0.21 -1.80 16 24 C -0.06 -2.49 3.95 -19.87 -0.08 -2.57 16 25 C -0.10 -4.35 8.29 22.27 0.18 -4.17 16 26 C -0.13 -4.82 10.05 22.27 0.22 -4.60 16 27 C -0.14 -4.31 10.05 22.27 0.22 -4.09 16 28 C -0.13 -4.17 10.05 22.27 0.22 -3.95 16 29 C -0.15 -5.95 9.26 22.27 0.21 -5.75 16 30 H 0.27 14.52 8.31 -92.71 -0.77 13.75 16 31 H 0.41 13.12 8.35 -92.71 -0.77 12.35 16 32 H 0.08 2.06 8.10 -2.39 -0.02 2.04 16 33 H 0.08 2.14 8.10 -2.39 -0.02 2.12 16 34 H 0.17 2.43 8.06 -2.91 -0.02 2.40 16 35 H 0.20 2.07 8.06 -2.91 -0.02 2.05 16 36 H 0.43 2.95 9.11 -74.06 -0.67 2.27 16 37 H 0.15 3.41 7.64 -2.91 -0.02 3.39 16 38 H 0.09 4.38 7.90 -2.91 -0.02 4.36 16 39 H 0.14 4.05 8.06 -2.91 -0.02 4.03 16 40 H 0.15 3.48 8.06 -2.91 -0.02 3.45 16 41 H 0.15 3.65 8.06 -2.91 -0.02 3.63 16 42 H 0.12 4.18 7.96 -2.91 -0.02 4.16 16 Total: -1.00 -72.37 372.11 1.73 -70.64 By element: Atomic # 1 Polarization: 34.37 SS G_CDS: -0.44 Total: 33.93 kcal Atomic # 6 Polarization: -11.32 SS G_CDS: 4.89 Total: -6.43 kcal Atomic # 7 Polarization: -86.49 SS G_CDS: -4.12 Total: -90.61 kcal Atomic # 8 Polarization: -49.15 SS G_CDS: -0.44 Total: -49.59 kcal Atomic # 14 Polarization: 40.22 SS G_CDS: 1.83 Total: 42.06 kcal Total: -72.37 1.73 -70.64 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608177591.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.944 kcal (2) G-P(sol) polarization free energy of solvation -72.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.638 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds