Wall clock time and date at job start Sat Apr 11 2020 05:56:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.39463 * 120.13856 * 2 1 4 4 C 1.47744 * 120.09020 * 0.02562 * 3 2 1 5 5 O 1.21591 * 119.99845 * 51.55686 * 4 3 2 6 6 N 1.34782 * 119.99875 * 231.55062 * 4 3 2 7 7 C 1.36872 * 119.99886 * 185.03404 * 6 4 3 8 8 H 1.08001 * 120.00036 * 325.91129 * 7 6 4 9 9 C 1.39043 * 120.00051 * 145.90969 * 7 6 4 10 10 N 1.31365 * 120.00121 * 159.76129 * 9 7 6 11 11 Si 1.86802 * 119.99965 * 339.76361 * 9 7 6 12 12 H 1.48506 * 109.47112 * 91.94430 * 11 9 7 13 13 H 1.48504 * 109.47179 * 211.94256 * 11 9 7 14 14 H 1.48500 * 109.47330 * 331.94522 * 11 9 7 15 15 C 1.46500 * 119.99965 * 5.03654 * 6 4 3 16 16 C 1.50703 * 109.46684 * 83.93647 * 15 6 4 17 17 O 1.20824 * 120.00562 * 359.97438 * 16 15 6 18 18 O 1.34227 * 119.99560 * 179.97438 * 16 15 6 19 19 C 1.39692 * 119.81900 * 180.23046 * 3 2 1 20 20 C 1.38043 * 120.09032 * 359.77315 * 19 3 2 21 21 C 1.38129 * 120.28737 * 359.97438 * 20 19 3 22 22 C 1.39067 * 120.13735 * 179.75361 * 2 1 3 23 23 C 1.48359 * 120.05132 * 0.02562 * 22 2 1 24 24 C 1.39332 * 119.72582 * 171.15353 * 23 22 2 25 25 C 1.38399 * 119.06713 * 179.97438 * 24 23 22 26 26 C 1.38784 * 118.50949 * 359.97438 * 25 24 23 27 27 C 1.38246 * 119.37076 * 0.25965 * 26 25 24 28 28 N 1.31767 * 120.88633 * 359.46951 * 27 26 25 29 29 H 1.09004 * 109.46865 * 262.41088 * 1 2 3 30 30 H 1.08990 * 109.47716 * 22.41419 * 1 2 3 31 31 H 1.09001 * 109.47262 * 142.42192 * 1 2 3 32 32 H 0.97005 * 119.99857 * 179.97438 * 10 9 7 33 33 H 1.08992 * 109.46578 * 203.93289 * 15 6 4 34 34 H 1.08998 * 109.46941 * 323.93604 * 15 6 4 35 35 H 0.96696 * 117.00014 * 180.02562 * 18 16 15 36 36 H 1.07997 * 119.95417 * 179.78981 * 19 3 2 37 37 H 1.08005 * 119.85751 * 179.97438 * 20 19 3 38 38 H 1.07997 * 119.90858 * 180.02562 * 21 20 19 39 39 H 1.08001 * 120.46611 * 359.95533 * 24 23 22 40 40 H 1.08003 * 120.74258 * 180.02562 * 25 24 23 41 41 H 1.08006 * 120.31325 * 179.97438 * 26 25 24 42 42 H 1.07997 * 119.55325 * 179.74869 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2073 1.2061 0.0000 4 6 1.4737 2.4885 0.0006 5 8 0.6038 2.6910 0.8257 6 7 1.7687 3.4341 -0.9135 7 6 1.1630 4.6598 -0.8501 8 1 0.1431 4.7410 -0.5044 9 6 1.8609 5.8007 -1.2307 10 7 1.2071 6.8933 -1.5540 11 14 3.7281 5.7796 -1.2825 12 1 4.1813 5.3997 -2.6447 13 1 4.2478 7.1295 -0.9464 14 1 4.2395 4.7929 -0.2975 15 6 2.7377 3.1498 -1.9749 16 6 2.0453 2.4409 -3.1103 17 8 0.8639 2.1977 -3.0400 18 8 2.7412 2.0797 -4.1998 19 6 3.6042 1.1983 -0.0049 20 6 4.2896 0.0001 -0.0050 21 6 3.6002 -1.1969 0.0003 22 6 2.2053 -1.2027 0.0052 23 6 1.4677 -2.4899 0.0101 24 6 2.1617 -3.6845 -0.1708 25 6 1.4601 -4.8775 -0.1632 26 6 0.0858 -4.8366 0.0258 27 6 -0.5394 -3.6151 0.1945 28 7 0.1533 -2.4942 0.1882 29 1 -0.3633 -0.1357 1.0187 30 1 -0.3634 0.9499 -0.3918 31 1 -0.3634 -0.8144 -0.6267 32 1 1.6940 7.6893 -1.8192 33 1 3.1647 4.0850 -2.3368 34 1 3.5322 2.5158 -1.5812 35 1 2.2538 1.6278 -4.9021 36 1 4.1486 2.1310 -0.0083 37 1 5.3696 -0.0016 -0.0091 38 1 4.1426 -2.1307 0.0006 39 1 3.2320 -3.6796 -0.3153 40 1 1.9708 -5.8192 -0.3005 41 1 -0.4904 -5.7500 0.0365 42 1 -1.6092 -3.5796 0.3377 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001610405159.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:42 Heat of formation + Delta-G solvation = -20.691684 kcal Electronic energy + Delta-G solvation = -29816.315788 eV Core-core repulsion = 25728.099002 eV Total energy + Delta-G solvation = -4088.216787 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.126 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.69621 -40.05687 -39.13754 -37.71001 -35.70838 -34.92402 -33.42665 -32.75300 -32.10208 -31.80138 -29.60907 -28.09146 -26.93530 -25.30865 -24.17076 -23.54190 -22.24933 -21.68326 -20.96016 -19.19680 -17.76217 -17.36990 -17.30889 -16.68707 -16.39177 -16.16539 -16.05605 -15.48592 -15.20656 -15.00771 -14.83231 -14.44086 -14.11009 -13.77733 -13.40647 -13.28400 -13.02609 -12.98228 -12.79560 -12.59376 -12.33613 -12.20969 -11.99842 -11.72807 -11.47217 -11.28124 -11.09375 -11.05499 -10.86364 -10.55303 -10.11053 -10.08411 -9.96108 -9.73217 -9.29990 -9.13416 -8.73098 -8.47647 -8.18365 -7.97793 -6.48297 -4.04755 0.49003 1.10696 1.36998 1.73094 2.71491 2.88210 3.07551 3.10126 3.20889 3.46695 3.84027 3.98892 4.04186 4.11907 4.23959 4.52937 4.66945 4.82596 4.85576 4.92958 4.99843 5.08507 5.16600 5.27292 5.39721 5.42402 5.52985 5.58263 5.61778 5.79259 5.82500 5.92267 5.97727 6.10083 6.21517 6.37625 6.43130 6.50144 6.56391 6.81904 6.88197 6.90830 7.09653 7.39652 7.87815 8.14091 8.32613 8.41327 8.82150 9.17292 9.57668 10.63551 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.017808 B = 0.003696 C = 0.003608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1571.948807 B = 7573.761587 C = 7759.033038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.008 3.992 3 C -0.117 4.117 4 C 0.522 3.478 5 O -0.535 6.535 6 N -0.442 5.442 7 C -0.313 4.313 8 H 0.114 0.886 9 C 0.057 3.943 10 N -0.854 5.854 11 Si 0.862 3.138 12 H -0.268 1.268 13 H -0.279 1.279 14 H -0.258 1.258 15 C 0.083 3.917 16 C 0.457 3.543 17 O -0.489 6.489 18 O -0.525 6.525 19 C -0.089 4.089 20 C -0.135 4.135 21 C -0.088 4.088 22 C -0.072 4.072 23 C 0.180 3.820 24 C -0.167 4.167 25 C -0.074 4.074 26 C -0.183 4.183 27 C 0.102 3.898 28 N -0.466 5.466 29 H 0.076 0.924 30 H 0.065 0.935 31 H 0.086 0.914 32 H 0.276 0.724 33 H 0.114 0.886 34 H 0.113 0.887 35 H 0.400 0.600 36 H 0.132 0.868 37 H 0.130 0.870 38 H 0.126 0.874 39 H 0.136 0.864 40 H 0.133 0.867 41 H 0.132 0.868 42 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.623 -21.117 -1.396 22.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.006 3.994 3 C -0.120 4.120 4 C 0.311 3.689 5 O -0.415 6.415 6 N -0.164 5.164 7 C -0.440 4.440 8 H 0.132 0.868 9 C -0.149 4.149 10 N -0.490 5.490 11 Si 0.689 3.311 12 H -0.196 1.196 13 H -0.205 1.205 14 H -0.182 1.182 15 C -0.042 4.042 16 C 0.296 3.704 17 O -0.374 6.374 18 O -0.337 6.337 19 C -0.108 4.108 20 C -0.153 4.153 21 C -0.107 4.107 22 C -0.072 4.072 23 C 0.044 3.956 24 C -0.187 4.187 25 C -0.100 4.100 26 C -0.203 4.203 27 C -0.056 4.056 28 N -0.175 5.175 29 H 0.095 0.905 30 H 0.084 0.916 31 H 0.104 0.896 32 H 0.087 0.913 33 H 0.131 0.869 34 H 0.130 0.870 35 H 0.258 0.742 36 H 0.150 0.850 37 H 0.148 0.852 38 H 0.144 0.856 39 H 0.154 0.846 40 H 0.151 0.849 41 H 0.150 0.850 42 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 6.555 -19.854 -0.551 20.915 hybrid contribution 1.207 -0.945 -0.866 1.761 sum 7.762 -20.799 -1.417 22.245 Atomic orbital electron populations 1.21050 0.89255 1.02856 1.03070 1.20161 0.97419 0.90068 0.91769 1.20292 0.93797 0.94595 1.03361 1.17901 0.85373 0.83270 0.82338 1.90681 1.32057 1.79459 1.39293 1.43241 1.39643 1.13244 1.20255 1.19127 0.99552 0.79812 1.45553 0.86829 1.25363 0.98362 0.95191 0.96004 1.69708 1.36392 1.03068 1.39836 0.87245 0.86490 0.78885 0.78509 1.19585 1.20545 1.18187 1.21960 0.93624 1.01555 0.87094 1.24484 0.86673 0.76377 0.82844 1.90710 1.16627 1.50579 1.79489 1.84559 1.47218 1.72501 1.29428 1.21500 0.93181 0.98750 0.97382 1.20889 0.99896 0.91688 1.02804 1.21182 0.92547 0.98334 0.98672 1.18287 0.92451 0.90501 1.06001 1.19799 0.89451 0.92127 0.94182 1.22061 1.01408 0.92598 1.02647 1.21495 0.94322 0.98250 0.95929 1.22161 0.95557 0.99688 1.02895 1.22894 1.00533 0.87635 0.94531 1.68200 1.07267 1.29740 1.12253 0.90534 0.91571 0.89615 0.91287 0.86860 0.86991 0.74175 0.85020 0.85216 0.85625 0.84616 0.84869 0.84962 0.82558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.07 7.77 36.01 0.28 -1.79 16 2 C 0.01 0.14 5.94 -103.86 -0.62 -0.47 16 3 C -0.12 -2.33 5.05 -105.01 -0.53 -2.86 16 4 C 0.52 12.82 5.90 -12.37 -0.07 12.75 16 5 O -0.54 -14.92 15.51 5.29 0.08 -14.84 16 6 N -0.44 -11.00 1.81 -117.21 -0.21 -11.22 16 7 C -0.31 -8.94 9.49 -15.00 -0.14 -9.08 16 8 H 0.11 3.68 7.79 -52.49 -0.41 3.27 16 9 C 0.06 1.55 5.34 -17.45 -0.09 1.46 16 10 N -0.85 -24.40 13.95 55.50 0.77 -23.63 16 11 Si 0.86 19.11 24.86 -169.99 -4.23 14.88 16 12 H -0.27 -5.46 6.54 56.52 0.37 -5.09 16 13 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 14 H -0.26 -5.39 7.11 56.52 0.40 -4.98 16 15 C 0.08 1.73 4.30 -5.19 -0.02 1.71 16 16 C 0.46 9.23 8.33 36.01 0.30 9.53 16 17 O -0.49 -11.52 17.04 -18.75 -0.32 -11.84 16 18 O -0.53 -8.12 13.42 -39.25 -0.53 -8.65 16 19 C -0.09 -1.45 7.61 -39.11 -0.30 -1.74 16 20 C -0.13 -1.71 10.02 -39.69 -0.40 -2.11 16 21 C -0.09 -1.10 9.40 -39.15 -0.37 -1.47 16 22 C -0.07 -1.10 5.86 -104.96 -0.62 -1.71 16 23 C 0.18 2.48 6.63 -82.94 -0.55 1.94 16 24 C -0.17 -1.74 9.44 -39.12 -0.37 -2.11 16 25 C -0.07 -0.63 10.17 -39.32 -0.40 -1.03 16 26 C -0.18 -1.58 10.11 -39.38 -0.40 -1.98 16 27 C 0.10 1.10 11.18 -17.58 -0.20 0.91 16 28 N -0.47 -6.64 6.28 -9.78 -0.06 -6.70 16 29 H 0.08 1.48 8.11 -51.93 -0.42 1.06 16 30 H 0.07 1.51 6.35 -51.93 -0.33 1.18 16 31 H 0.09 1.55 5.81 -51.93 -0.30 1.25 16 32 H 0.28 7.24 8.31 -40.82 -0.34 6.90 16 33 H 0.11 2.40 2.85 -51.93 -0.15 2.26 16 34 H 0.11 1.97 4.17 -51.93 -0.22 1.75 16 35 H 0.40 4.32 9.10 45.56 0.41 4.74 16 36 H 0.13 2.02 6.99 -52.49 -0.37 1.65 16 37 H 0.13 1.20 8.06 -52.48 -0.42 0.77 16 38 H 0.13 1.12 6.25 -52.49 -0.33 0.79 16 39 H 0.14 1.07 6.27 -52.49 -0.33 0.75 16 40 H 0.13 0.73 8.06 -52.48 -0.42 0.31 16 41 H 0.13 0.76 8.06 -52.48 -0.42 0.34 16 42 H 0.16 1.31 8.06 -52.49 -0.42 0.88 16 LS Contribution 350.39 15.07 5.28 5.28 Total: -1.00 -35.78 350.39 -6.99 -42.77 By element: Atomic # 1 Polarization: 15.31 SS G_CDS: -3.29 Total: 12.02 kcal Atomic # 6 Polarization: 6.42 SS G_CDS: -4.49 Total: 1.93 kcal Atomic # 7 Polarization: -42.05 SS G_CDS: 0.50 Total: -41.55 kcal Atomic # 8 Polarization: -34.57 SS G_CDS: -0.76 Total: -35.33 kcal Atomic # 14 Polarization: 19.11 SS G_CDS: -4.23 Total: 14.88 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -35.78 -6.99 -42.77 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001610405159.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.080 kcal (2) G-P(sol) polarization free energy of solvation -35.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.771 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds