Wall clock time and date at job start Sat Apr 11 2020 05:56:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.39463 * 120.13856 * 2 1 4 4 C 1.47744 * 120.09020 * 0.02562 * 3 2 1 5 5 O 1.21591 * 119.99845 * 51.55686 * 4 3 2 6 6 N 1.34782 * 119.99875 * 231.55062 * 4 3 2 7 7 C 1.36872 * 119.99886 * 185.03404 * 6 4 3 8 8 H 1.08001 * 120.00036 * 325.91129 * 7 6 4 9 9 C 1.39043 * 120.00051 * 145.90969 * 7 6 4 10 10 N 1.31365 * 120.00121 * 159.76129 * 9 7 6 11 11 Si 1.86802 * 119.99965 * 339.76361 * 9 7 6 12 12 H 1.48506 * 109.47112 * 91.94430 * 11 9 7 13 13 H 1.48504 * 109.47179 * 211.94256 * 11 9 7 14 14 H 1.48500 * 109.47330 * 331.94522 * 11 9 7 15 15 C 1.46500 * 119.99965 * 5.03654 * 6 4 3 16 16 C 1.50703 * 109.46684 * 83.93647 * 15 6 4 17 17 O 1.20824 * 120.00562 * 359.97438 * 16 15 6 18 18 O 1.34227 * 119.99560 * 179.97438 * 16 15 6 19 19 C 1.39692 * 119.81900 * 180.23046 * 3 2 1 20 20 C 1.38043 * 120.09032 * 359.77315 * 19 3 2 21 21 C 1.38129 * 120.28737 * 359.97438 * 20 19 3 22 22 C 1.39067 * 120.13735 * 179.75361 * 2 1 3 23 23 C 1.48359 * 120.05132 * 0.02562 * 22 2 1 24 24 C 1.39332 * 119.72582 * 171.15353 * 23 22 2 25 25 C 1.38399 * 119.06713 * 179.97438 * 24 23 22 26 26 C 1.38784 * 118.50949 * 359.97438 * 25 24 23 27 27 C 1.38246 * 119.37076 * 0.25965 * 26 25 24 28 28 N 1.31767 * 120.88633 * 359.46951 * 27 26 25 29 29 H 1.09004 * 109.46865 * 262.41088 * 1 2 3 30 30 H 1.08990 * 109.47716 * 22.41419 * 1 2 3 31 31 H 1.09001 * 109.47262 * 142.42192 * 1 2 3 32 32 H 0.97005 * 119.99857 * 179.97438 * 10 9 7 33 33 H 1.08992 * 109.46578 * 203.93289 * 15 6 4 34 34 H 1.08998 * 109.46941 * 323.93604 * 15 6 4 35 35 H 0.96696 * 117.00014 * 180.02562 * 18 16 15 36 36 H 1.07997 * 119.95417 * 179.78981 * 19 3 2 37 37 H 1.08005 * 119.85751 * 179.97438 * 20 19 3 38 38 H 1.07997 * 119.90858 * 180.02562 * 21 20 19 39 39 H 1.08001 * 120.46611 * 359.95533 * 24 23 22 40 40 H 1.08003 * 120.74258 * 180.02562 * 25 24 23 41 41 H 1.08006 * 120.31325 * 179.97438 * 26 25 24 42 42 H 1.07997 * 119.55325 * 179.74869 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2073 1.2061 0.0000 4 6 1.4737 2.4885 0.0006 5 8 0.6038 2.6910 0.8257 6 7 1.7687 3.4341 -0.9135 7 6 1.1630 4.6598 -0.8501 8 1 0.1431 4.7410 -0.5044 9 6 1.8609 5.8007 -1.2307 10 7 1.2071 6.8933 -1.5540 11 14 3.7281 5.7796 -1.2825 12 1 4.1813 5.3997 -2.6447 13 1 4.2478 7.1295 -0.9464 14 1 4.2395 4.7929 -0.2975 15 6 2.7377 3.1498 -1.9749 16 6 2.0453 2.4409 -3.1103 17 8 0.8639 2.1977 -3.0400 18 8 2.7412 2.0797 -4.1998 19 6 3.6042 1.1983 -0.0049 20 6 4.2896 0.0001 -0.0050 21 6 3.6002 -1.1969 0.0003 22 6 2.2053 -1.2027 0.0052 23 6 1.4677 -2.4899 0.0101 24 6 2.1617 -3.6845 -0.1708 25 6 1.4601 -4.8775 -0.1632 26 6 0.0858 -4.8366 0.0258 27 6 -0.5394 -3.6151 0.1945 28 7 0.1533 -2.4942 0.1882 29 1 -0.3633 -0.1357 1.0187 30 1 -0.3634 0.9499 -0.3918 31 1 -0.3634 -0.8144 -0.6267 32 1 1.6940 7.6893 -1.8192 33 1 3.1647 4.0850 -2.3368 34 1 3.5322 2.5158 -1.5812 35 1 2.2538 1.6278 -4.9021 36 1 4.1486 2.1310 -0.0083 37 1 5.3696 -0.0016 -0.0091 38 1 4.1426 -2.1307 0.0006 39 1 3.2320 -3.6796 -0.3153 40 1 1.9708 -5.8192 -0.3005 41 1 -0.4904 -5.7500 0.0365 42 1 -1.6092 -3.5796 0.3377 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001610405159.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:41 Heat of formation + Delta-G solvation = -46.630630 kcal Electronic energy + Delta-G solvation = -29817.440586 eV Core-core repulsion = 25728.099002 eV Total energy + Delta-G solvation = -4089.341584 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.126 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.99949 -41.31535 -40.55276 -39.13988 -37.31540 -36.75951 -34.58716 -34.21259 -33.55237 -32.89124 -30.69359 -29.81827 -28.31964 -27.11597 -25.22234 -24.43672 -23.63208 -23.19310 -22.05822 -20.74664 -19.31580 -19.27039 -18.60886 -18.04318 -17.71103 -17.48287 -17.15393 -16.68236 -16.61959 -16.45132 -16.17650 -15.71065 -15.44457 -15.05257 -14.84234 -14.62699 -14.38890 -14.27287 -14.19942 -14.05789 -14.00827 -13.72196 -13.10462 -12.97697 -12.88379 -12.66763 -12.62896 -12.53868 -12.31884 -12.08999 -11.91210 -11.71778 -11.15309 -10.88627 -10.68646 -10.59867 -10.11021 -9.99702 -9.71092 -9.19043 -8.57512 -6.23826 -0.45175 0.12130 0.39217 0.75509 1.11476 1.13184 1.29818 1.43613 1.58103 2.05171 2.13548 2.48424 2.60276 2.94710 3.08521 3.19049 3.51319 3.72641 3.81546 3.89867 3.96266 4.04005 4.07433 4.10140 4.21247 4.27652 4.37646 4.51528 4.56020 4.68450 4.77364 4.81466 4.86050 4.95641 5.13345 5.27184 5.31303 5.34490 5.37538 5.43617 5.53937 5.58165 5.81207 5.91767 5.95359 6.36512 6.76076 6.93221 7.08207 7.10077 7.63532 8.60052 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.017808 B = 0.003696 C = 0.003608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1571.948807 B = 7573.761587 C = 7759.033038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C -0.029 4.029 3 C -0.145 4.145 4 C 0.516 3.484 5 O -0.596 6.596 6 N -0.451 5.451 7 C -0.343 4.343 8 H 0.040 0.960 9 C 0.006 3.994 10 N -0.906 5.906 11 Si 0.935 3.065 12 H -0.225 1.225 13 H -0.275 1.275 14 H -0.233 1.233 15 C 0.079 3.921 16 C 0.465 3.535 17 O -0.537 6.537 18 O -0.500 6.500 19 C -0.101 4.101 20 C -0.109 4.109 21 C -0.071 4.071 22 C -0.068 4.068 23 C 0.140 3.860 24 C -0.157 4.157 25 C -0.071 4.071 26 C -0.169 4.169 27 C 0.077 3.923 28 N -0.511 5.511 29 H 0.060 0.940 30 H 0.012 0.988 31 H 0.094 0.906 32 H 0.285 0.715 33 H 0.117 0.883 34 H 0.154 0.846 35 H 0.425 0.575 36 H 0.143 0.857 37 H 0.184 0.816 38 H 0.177 0.823 39 H 0.169 0.831 40 H 0.175 0.825 41 H 0.166 0.834 42 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.811 -25.866 -2.726 29.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.030 4.030 3 C -0.149 4.149 4 C 0.307 3.693 5 O -0.479 6.479 6 N -0.172 5.172 7 C -0.471 4.471 8 H 0.058 0.942 9 C -0.196 4.196 10 N -0.542 5.542 11 Si 0.755 3.245 12 H -0.150 1.150 13 H -0.201 1.201 14 H -0.156 1.156 15 C -0.045 4.045 16 C 0.306 3.694 17 O -0.426 6.426 18 O -0.313 6.313 19 C -0.120 4.120 20 C -0.126 4.126 21 C -0.090 4.090 22 C -0.069 4.069 23 C 0.005 3.995 24 C -0.177 4.177 25 C -0.097 4.097 26 C -0.188 4.188 27 C -0.080 4.080 28 N -0.221 5.221 29 H 0.078 0.922 30 H 0.031 0.969 31 H 0.113 0.887 32 H 0.095 0.905 33 H 0.134 0.866 34 H 0.171 0.829 35 H 0.287 0.713 36 H 0.160 0.840 37 H 0.201 0.799 38 H 0.195 0.805 39 H 0.186 0.814 40 H 0.192 0.808 41 H 0.183 0.817 42 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 12.766 -24.631 -1.938 27.810 hybrid contribution -0.870 0.312 -0.482 1.042 sum 11.896 -24.318 -2.420 27.180 Atomic orbital electron populations 1.20767 0.91581 0.99938 1.01882 1.20104 0.96295 0.91623 0.95010 1.19944 0.95509 0.91889 1.07528 1.18840 0.84528 0.84799 0.81103 1.90613 1.34770 1.80996 1.41559 1.43182 1.40140 1.12061 1.21776 1.18628 0.97590 0.82988 1.47870 0.94248 1.26342 1.05333 0.93668 0.94274 1.69847 1.39467 1.04182 1.40715 0.86092 0.77182 0.79840 0.81384 1.14962 1.20094 1.15589 1.22136 0.93323 1.02580 0.86480 1.24246 0.85854 0.75651 0.83665 1.90724 1.18727 1.52606 1.80517 1.84460 1.46201 1.72021 1.28655 1.21677 0.91091 1.01122 0.98116 1.21450 1.02202 0.89838 0.99143 1.21770 0.91057 1.00568 0.95559 1.18619 0.94122 0.89765 1.04420 1.19895 0.89623 0.92778 0.97179 1.22378 1.02892 0.91562 1.00830 1.22016 0.94145 0.99292 0.94235 1.22561 0.96347 0.99724 1.00178 1.23218 1.01226 0.88069 0.95501 1.67971 1.08537 1.32029 1.13564 0.92160 0.96901 0.88736 0.90539 0.86638 0.82869 0.71341 0.83982 0.79913 0.80541 0.81383 0.80793 0.81687 0.81670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.75 7.77 71.24 0.55 -3.19 16 2 C -0.03 -1.12 5.94 -19.37 -0.12 -1.23 16 3 C -0.15 -5.98 5.05 -20.12 -0.10 -6.08 16 4 C 0.52 27.55 5.90 86.76 0.51 28.06 16 5 O -0.60 -37.53 15.51 -4.00 -0.06 -37.59 16 6 N -0.45 -23.83 1.81 -642.99 -1.16 -24.99 16 7 C -0.34 -21.47 9.49 84.10 0.80 -20.67 16 8 H 0.04 2.94 7.79 -2.91 -0.02 2.92 16 9 C 0.01 0.36 5.34 84.96 0.45 0.81 16 10 N -0.91 -54.92 13.95 21.68 0.30 -54.62 16 11 Si 0.94 38.74 24.86 68.60 1.71 40.44 16 12 H -0.22 -7.80 6.54 99.48 0.65 -7.15 16 13 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 14 H -0.23 -8.72 7.11 99.48 0.71 -8.01 16 15 C 0.08 3.23 4.30 85.63 0.37 3.60 16 16 C 0.46 18.67 8.33 71.24 0.59 19.26 16 17 O -0.54 -26.72 17.04 21.97 0.37 -26.34 16 18 O -0.50 -13.97 13.42 -51.39 -0.69 -14.66 16 19 C -0.10 -3.00 7.61 22.57 0.17 -2.83 16 20 C -0.11 -2.11 10.02 22.20 0.22 -1.89 16 21 C -0.07 -1.38 9.40 22.55 0.21 -1.17 16 22 C -0.07 -1.98 5.86 -20.08 -0.12 -2.10 16 23 C 0.14 3.62 6.63 41.98 0.28 3.90 16 24 C -0.16 -2.51 9.44 22.57 0.21 -2.30 16 25 C -0.07 -0.85 10.17 22.44 0.23 -0.62 16 26 C -0.17 -2.33 10.11 22.40 0.23 -2.10 16 27 C 0.08 1.62 11.18 84.70 0.95 2.57 16 28 N -0.51 -14.83 6.28 -184.85 -1.16 -15.99 16 29 H 0.06 2.69 8.11 -2.38 -0.02 2.67 16 30 H 0.01 0.64 6.35 -2.39 -0.02 0.63 16 31 H 0.09 3.83 5.81 -2.39 -0.01 3.82 16 32 H 0.28 15.53 8.31 -92.70 -0.77 14.76 16 33 H 0.12 4.63 2.85 -2.39 -0.01 4.62 16 34 H 0.15 4.92 4.17 -2.39 -0.01 4.91 16 35 H 0.43 7.92 9.10 -74.06 -0.67 7.25 16 36 H 0.14 3.82 6.99 -2.91 -0.02 3.80 16 37 H 0.18 1.73 8.06 -2.91 -0.02 1.70 16 38 H 0.18 1.64 6.25 -2.91 -0.02 1.63 16 39 H 0.17 1.43 6.27 -2.91 -0.02 1.42 16 40 H 0.17 0.68 8.06 -2.91 -0.02 0.65 16 41 H 0.17 1.14 8.06 -2.91 -0.02 1.12 16 42 H 0.17 2.85 8.06 -2.91 -0.02 2.82 16 Total: -1.00 -95.79 350.39 5.13 -90.66 By element: Atomic # 1 Polarization: 28.68 SS G_CDS: 0.38 Total: 29.06 kcal Atomic # 6 Polarization: 8.58 SS G_CDS: 5.44 Total: 14.02 kcal Atomic # 7 Polarization: -93.58 SS G_CDS: -2.02 Total: -95.60 kcal Atomic # 8 Polarization: -78.21 SS G_CDS: -0.38 Total: -78.59 kcal Atomic # 14 Polarization: 38.74 SS G_CDS: 1.71 Total: 40.44 kcal Total: -95.79 5.13 -90.66 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001610405159.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.029 kcal (2) G-P(sol) polarization free energy of solvation -95.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.660 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds