Wall clock time and date at job start Sat Apr 11 2020 05:57:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 C 1.38287 * 119.88352 * 2 1 4 4 C 1.37963 * 120.20560 * 180.25768 * 3 2 1 5 5 C 1.39597 * 119.96508 * 359.46334 * 4 3 2 6 6 C 1.47859 * 120.11808 * 180.25666 * 5 4 3 7 7 O 1.21550 * 120.00016 * 180.02562 * 6 5 4 8 8 N 1.34776 * 119.99819 * 0.02562 * 6 5 4 9 9 N 1.40098 * 120.00012 * 180.02562 * 8 6 5 10 10 C 1.34776 * 120.00012 * 180.02562 * 9 8 6 11 11 O 1.21586 * 120.00380 * 0.02562 * 10 9 8 12 12 C 1.47646 * 120.00101 * 180.02562 * 10 9 8 13 13 C 1.40017 * 119.89237 * 359.72158 * 12 10 9 14 14 C 1.36318 * 120.10168 * 179.76429 * 13 12 10 15 15 C 1.40888 * 119.89425 * 0.51070 * 14 13 12 16 16 C 1.41107 * 120.10346 * 179.72048 * 15 14 13 17 17 H 1.08000 * 120.00343 * 204.66088 * 16 15 14 18 18 C 1.40231 * 120.00291 * 24.65347 * 16 15 14 19 19 N 1.30651 * 119.99417 * 17.86454 * 18 16 15 20 20 Si 1.86796 * 120.00332 * 197.86690 * 18 16 15 21 21 H 1.48495 * 109.47341 * 59.99659 * 20 18 16 22 22 H 1.48497 * 109.47380 * 180.02562 * 20 18 16 23 23 H 1.48502 * 109.46915 * 300.00245 * 20 18 16 24 24 C 1.40890 * 119.79286 * 359.74562 * 15 14 13 25 25 C 1.36315 * 119.88967 * 359.97438 * 24 15 14 26 26 C 1.39492 * 119.76476 * 0.28113 * 5 4 3 27 27 C 1.38493 * 119.79291 * 359.97438 * 26 5 4 28 28 O 1.35906 * 119.98249 * 179.97438 * 27 26 5 29 29 H 1.08992 * 109.47094 * 270.25660 * 1 2 3 30 30 H 1.09007 * 109.46547 * 30.25637 * 1 2 3 31 31 H 1.08998 * 109.47216 * 150.25404 * 1 2 3 32 32 H 1.08004 * 119.89620 * 0.02562 * 3 2 1 33 33 H 1.08003 * 120.01426 * 179.73898 * 4 3 2 34 34 H 0.96998 * 120.00248 * 0.02562 * 8 6 5 35 35 H 0.97002 * 120.00515 * 359.97438 * 9 8 6 36 36 H 1.08000 * 119.94542 * 0.02562 * 13 12 10 37 37 H 1.08003 * 120.05328 * 180.23496 * 14 13 12 38 38 H 0.97001 * 119.99288 * 179.97438 * 19 18 16 39 39 H 1.08004 * 120.04947 * 179.97438 * 24 15 14 40 40 H 1.08001 * 119.94481 * 179.97438 * 25 24 15 41 41 H 1.08002 * 120.09836 * 179.97438 * 26 5 4 42 42 H 0.96705 * 114.00111 * 90.00398 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1961 1.1990 0.0000 4 6 3.5757 1.2068 -0.0054 5 6 4.2798 0.0014 0.0005 6 6 5.7583 0.0058 0.0005 7 8 6.3692 -1.0451 0.0052 8 7 6.4287 1.1750 -0.0046 9 7 7.8297 1.1792 -0.0052 10 6 8.5000 2.3484 -0.0098 11 8 7.8890 3.3996 -0.0130 12 6 9.9765 2.3529 -0.0109 13 6 10.6780 1.1411 -0.0013 14 6 12.0411 1.1402 -0.0071 15 6 12.7441 2.3612 -0.0120 16 6 14.1552 2.3654 -0.0121 17 1 14.6927 3.2185 0.3747 18 6 14.8597 1.2618 -0.5144 19 7 14.2561 0.3982 -1.2870 20 14 16.6608 1.0265 -0.0788 21 1 16.8017 0.9019 1.3942 22 1 17.1710 -0.2060 -0.7314 23 1 17.4419 2.1969 -0.5534 24 6 12.0338 3.5779 -0.0163 25 6 10.6707 3.5687 -0.0162 26 6 3.5834 -1.2073 0.0059 27 6 2.1985 -1.2036 0.0058 28 8 1.5162 -2.3789 0.0105 29 1 -0.3633 0.0046 1.0276 30 1 -0.3633 0.8878 -0.5179 31 1 -0.3633 -0.8922 -0.5099 32 1 1.6525 2.1323 0.0004 33 1 4.1107 2.1450 -0.0096 34 1 5.9412 2.0135 -0.0080 35 1 8.3173 0.3406 -0.0014 36 1 10.1382 0.2057 0.0065 37 1 12.5814 0.2051 -0.0035 38 1 14.7436 -0.3650 -1.6347 39 1 12.5685 4.5163 -0.0196 40 1 10.1253 4.5009 -0.0190 41 1 4.1227 -2.1430 0.0100 42 1 1.3186 -2.7156 0.8953 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001654792792.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:09 Heat of formation + Delta-G solvation = -43.184844 kcal Electronic energy + Delta-G solvation = -27039.792804 eV Core-core repulsion = 22950.600640 eV Total energy + Delta-G solvation = -4089.192163 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.126 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.74432 -39.72518 -38.68238 -37.22200 -36.87017 -35.05057 -33.97613 -33.28200 -31.56453 -30.36138 -29.75171 -29.51488 -27.54606 -25.88169 -23.27130 -22.98945 -22.17193 -21.23699 -20.90958 -20.25861 -18.82899 -17.68127 -17.53913 -17.35581 -16.42022 -16.03903 -15.66566 -15.53052 -15.35329 -15.20177 -14.56595 -14.17087 -14.07510 -14.02479 -13.97360 -13.71698 -13.31142 -12.87040 -12.80635 -12.55356 -12.22032 -12.19078 -12.05066 -11.87034 -11.51238 -11.31910 -11.15991 -11.04999 -10.98534 -10.71133 -10.27507 -10.16599 -9.64232 -9.43126 -9.29339 -9.28266 -9.02383 -8.14944 -7.80214 -7.62462 -7.11187 -4.68704 0.41338 0.86732 2.03743 2.06792 2.51977 2.88006 2.91436 2.94734 2.96924 3.38583 3.67828 3.72768 3.76800 4.10042 4.37626 4.44598 4.46219 4.64174 4.77830 4.92123 5.12039 5.18460 5.29808 5.48036 5.48766 5.63992 5.71904 5.85342 5.89071 5.97839 6.02984 6.22030 6.29146 6.69717 6.74235 6.84099 6.90386 6.97795 7.05330 7.23772 7.35108 7.56039 7.67346 7.77653 7.97417 8.00219 8.04145 8.31443 8.54341 8.66146 8.86760 9.80337 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.026873 B = 0.001865 C = 0.001754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1041.676954 B =15008.897984 C =15962.625792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.086 4.086 3 C -0.111 4.111 4 C -0.090 4.090 5 C -0.111 4.111 6 C 0.553 3.447 7 O -0.539 6.539 8 N -0.512 5.512 9 N -0.534 5.534 10 C 0.575 3.425 11 O -0.576 6.576 12 C -0.282 4.282 13 C -0.062 4.062 14 C -0.176 4.176 15 C 0.129 3.871 16 C -0.436 4.436 17 H 0.087 0.913 18 C 0.073 3.927 19 N -0.766 5.766 20 Si 0.916 3.084 21 H -0.260 1.260 22 H -0.275 1.275 23 H -0.261 1.261 24 C -0.238 4.238 25 C -0.015 4.015 26 C -0.078 4.078 27 C 0.096 3.904 28 O -0.492 6.492 29 H 0.073 0.927 30 H 0.071 0.929 31 H 0.076 0.924 32 H 0.136 0.864 33 H 0.132 0.868 34 H 0.428 0.572 35 H 0.430 0.570 36 H 0.091 0.909 37 H 0.122 0.878 38 H 0.289 0.711 39 H 0.101 0.899 40 H 0.103 0.897 41 H 0.145 0.855 42 H 0.391 0.609 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.217 -3.163 3.323 20.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.087 4.087 3 C -0.129 4.129 4 C -0.109 4.109 5 C -0.116 4.116 6 C 0.340 3.660 7 O -0.416 6.416 8 N -0.257 5.257 9 N -0.285 5.285 10 C 0.372 3.628 11 O -0.457 6.457 12 C -0.288 4.288 13 C -0.081 4.081 14 C -0.195 4.195 15 C 0.126 3.874 16 C -0.463 4.463 17 H 0.105 0.895 18 C -0.150 4.150 19 N -0.388 5.388 20 Si 0.739 3.261 21 H -0.184 1.184 22 H -0.200 1.200 23 H -0.186 1.186 24 C -0.258 4.258 25 C -0.035 4.035 26 C -0.097 4.097 27 C 0.051 3.949 28 O -0.302 6.302 29 H 0.092 0.908 30 H 0.090 0.910 31 H 0.095 0.905 32 H 0.154 0.846 33 H 0.150 0.850 34 H 0.271 0.729 35 H 0.274 0.726 36 H 0.109 0.891 37 H 0.140 0.860 38 H 0.101 0.899 39 H 0.119 0.881 40 H 0.121 0.879 41 H 0.163 0.837 42 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges -20.120 -3.333 2.551 20.553 hybrid contribution 0.780 -0.287 0.516 0.978 sum -19.340 -3.621 3.067 19.913 Atomic orbital electron populations 1.20773 0.90239 1.03658 1.02654 1.20473 0.97121 0.92512 0.98618 1.20908 0.93603 0.97640 1.00736 1.21400 0.94703 0.97190 0.97582 1.19498 0.91558 0.94148 1.06384 1.18221 0.87100 0.82863 0.77830 1.90805 1.69162 1.30815 1.50812 1.44596 0.96776 1.09848 1.74520 1.45203 0.92673 1.11559 1.79040 1.18879 0.88337 0.81054 0.74550 1.90642 1.70041 1.31165 1.53894 1.18538 0.87748 0.94956 1.27566 1.20506 0.95066 0.94536 0.97987 1.20981 0.92328 0.98804 1.07379 1.17817 0.93318 0.91161 0.85137 1.19879 0.91672 1.01726 1.33022 0.89520 1.26151 1.01876 0.94484 0.92443 1.69733 1.39311 1.10023 1.19749 0.86218 0.80679 0.78877 0.80301 1.18379 1.19966 1.18579 1.20699 0.93042 0.97252 1.14759 1.20310 0.93865 0.95389 0.93913 1.21501 0.93143 0.98522 0.96573 1.18088 0.89261 0.85210 1.02337 1.84829 1.75819 1.35993 1.33560 0.90846 0.91049 0.90534 0.84647 0.84978 0.72933 0.72603 0.89140 0.86012 0.89934 0.88129 0.87880 0.83714 0.75333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.64 9.78 36.01 0.35 -0.29 16 2 C -0.09 -0.69 5.90 -104.39 -0.62 -1.30 16 3 C -0.11 -0.86 9.68 -39.66 -0.38 -1.24 16 4 C -0.09 -0.84 9.54 -39.18 -0.37 -1.21 16 5 C -0.11 -1.31 5.87 -104.99 -0.62 -1.92 16 6 C 0.55 8.28 7.89 -12.32 -0.10 8.18 16 7 O -0.54 -9.67 16.18 5.32 0.09 -9.58 16 8 N -0.51 -7.89 6.21 30.53 0.19 -7.70 16 9 N -0.53 -9.67 6.21 30.48 0.19 -9.49 16 10 C 0.58 11.98 7.88 -12.42 -0.10 11.88 16 11 O -0.58 -12.80 16.16 5.29 0.09 -12.71 16 12 C -0.28 -6.30 5.89 -104.73 -0.62 -6.91 16 13 C -0.06 -1.36 9.47 -39.61 -0.38 -1.74 16 14 C -0.18 -4.25 8.64 -39.27 -0.34 -4.59 16 15 C 0.13 3.21 5.58 -106.80 -0.60 2.61 16 16 C -0.44 -10.54 9.04 -37.75 -0.34 -10.88 16 17 H 0.09 1.98 7.91 -52.49 -0.42 1.57 16 18 C 0.07 1.66 5.14 -17.31 -0.09 1.57 16 19 N -0.77 -18.05 10.95 55.56 0.61 -17.45 16 20 Si 0.92 16.90 29.60 -169.99 -5.03 11.87 16 21 H -0.26 -4.77 7.11 56.52 0.40 -4.37 16 22 H -0.27 -4.96 7.11 56.52 0.40 -4.55 16 23 H -0.26 -4.78 7.11 56.52 0.40 -4.37 16 24 C -0.24 -5.56 9.73 -39.27 -0.38 -5.94 16 25 C -0.02 -0.35 9.52 -39.61 -0.38 -0.73 16 26 C -0.08 -0.86 9.53 -39.02 -0.37 -1.23 16 27 C 0.10 0.88 6.67 -39.28 -0.26 0.62 16 28 O -0.49 -3.83 12.53 -19.44 -0.24 -4.07 16 29 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.07 0.32 8.09 -51.93 -0.42 -0.10 16 31 H 0.08 0.44 7.52 -51.93 -0.39 0.05 16 32 H 0.14 0.72 8.06 -52.48 -0.42 0.29 16 33 H 0.13 1.04 6.40 -52.48 -0.34 0.71 16 34 H 0.43 5.84 6.03 -182.60 -1.10 4.74 16 35 H 0.43 7.67 6.00 -182.60 -1.10 6.57 16 36 H 0.09 1.76 6.37 -52.49 -0.33 1.43 16 37 H 0.12 2.99 6.16 -52.48 -0.32 2.67 16 38 H 0.29 6.16 8.29 -40.82 -0.34 5.82 16 39 H 0.10 2.17 8.06 -52.48 -0.42 1.75 16 40 H 0.10 2.22 7.63 -52.49 -0.40 1.82 16 41 H 0.15 1.66 7.65 -52.49 -0.40 1.26 16 42 H 0.39 1.21 9.06 45.56 0.41 1.62 16 LS Contribution 366.27 15.07 5.52 5.52 Total: -1.00 -30.55 366.27 -9.39 -39.93 By element: Atomic # 1 Polarization: 22.00 SS G_CDS: -5.21 Total: 16.79 kcal Atomic # 6 Polarization: -7.54 SS G_CDS: -5.58 Total: -13.13 kcal Atomic # 7 Polarization: -35.61 SS G_CDS: 0.99 Total: -34.63 kcal Atomic # 8 Polarization: -26.29 SS G_CDS: -0.07 Total: -26.36 kcal Atomic # 14 Polarization: 16.90 SS G_CDS: -5.03 Total: 11.87 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -30.55 -9.39 -39.93 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001654792792.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.251 kcal (2) G-P(sol) polarization free energy of solvation -30.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.934 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds