Wall clock time and date at job start Sat Apr 11 2020 05:57:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 C 1.38287 * 119.88352 * 2 1 4 4 C 1.37963 * 120.20560 * 180.25768 * 3 2 1 5 5 C 1.39597 * 119.96508 * 359.46334 * 4 3 2 6 6 C 1.47859 * 120.11808 * 180.25666 * 5 4 3 7 7 O 1.21550 * 120.00016 * 180.02562 * 6 5 4 8 8 N 1.34776 * 119.99819 * 0.02562 * 6 5 4 9 9 N 1.40098 * 120.00012 * 180.02562 * 8 6 5 10 10 C 1.34776 * 120.00012 * 180.02562 * 9 8 6 11 11 O 1.21586 * 120.00380 * 0.02562 * 10 9 8 12 12 C 1.47646 * 120.00101 * 180.02562 * 10 9 8 13 13 C 1.40017 * 119.89237 * 359.72158 * 12 10 9 14 14 C 1.36318 * 120.10168 * 179.76429 * 13 12 10 15 15 C 1.40888 * 119.89425 * 0.51070 * 14 13 12 16 16 C 1.41107 * 120.10346 * 179.72048 * 15 14 13 17 17 H 1.08000 * 120.00343 * 204.66088 * 16 15 14 18 18 C 1.40231 * 120.00291 * 24.65347 * 16 15 14 19 19 N 1.30651 * 119.99417 * 17.86454 * 18 16 15 20 20 Si 1.86796 * 120.00332 * 197.86690 * 18 16 15 21 21 H 1.48495 * 109.47341 * 59.99659 * 20 18 16 22 22 H 1.48497 * 109.47380 * 180.02562 * 20 18 16 23 23 H 1.48502 * 109.46915 * 300.00245 * 20 18 16 24 24 C 1.40890 * 119.79286 * 359.74562 * 15 14 13 25 25 C 1.36315 * 119.88967 * 359.97438 * 24 15 14 26 26 C 1.39492 * 119.76476 * 0.28113 * 5 4 3 27 27 C 1.38493 * 119.79291 * 359.97438 * 26 5 4 28 28 O 1.35906 * 119.98249 * 179.97438 * 27 26 5 29 29 H 1.08992 * 109.47094 * 270.25660 * 1 2 3 30 30 H 1.09007 * 109.46547 * 30.25637 * 1 2 3 31 31 H 1.08998 * 109.47216 * 150.25404 * 1 2 3 32 32 H 1.08004 * 119.89620 * 0.02562 * 3 2 1 33 33 H 1.08003 * 120.01426 * 179.73898 * 4 3 2 34 34 H 0.96998 * 120.00248 * 0.02562 * 8 6 5 35 35 H 0.97002 * 120.00515 * 359.97438 * 9 8 6 36 36 H 1.08000 * 119.94542 * 0.02562 * 13 12 10 37 37 H 1.08003 * 120.05328 * 180.23496 * 14 13 12 38 38 H 0.97001 * 119.99288 * 179.97438 * 19 18 16 39 39 H 1.08004 * 120.04947 * 179.97438 * 24 15 14 40 40 H 1.08001 * 119.94481 * 179.97438 * 25 24 15 41 41 H 1.08002 * 120.09836 * 179.97438 * 26 5 4 42 42 H 0.96705 * 114.00111 * 90.00398 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1961 1.1990 0.0000 4 6 3.5757 1.2068 -0.0054 5 6 4.2798 0.0014 0.0005 6 6 5.7583 0.0058 0.0005 7 8 6.3692 -1.0451 0.0052 8 7 6.4287 1.1750 -0.0046 9 7 7.8297 1.1792 -0.0052 10 6 8.5000 2.3484 -0.0098 11 8 7.8890 3.3996 -0.0130 12 6 9.9765 2.3529 -0.0109 13 6 10.6780 1.1411 -0.0013 14 6 12.0411 1.1402 -0.0071 15 6 12.7441 2.3612 -0.0120 16 6 14.1552 2.3654 -0.0121 17 1 14.6927 3.2185 0.3747 18 6 14.8597 1.2618 -0.5144 19 7 14.2561 0.3982 -1.2870 20 14 16.6608 1.0265 -0.0788 21 1 16.8017 0.9019 1.3942 22 1 17.1710 -0.2060 -0.7314 23 1 17.4419 2.1969 -0.5534 24 6 12.0338 3.5779 -0.0163 25 6 10.6707 3.5687 -0.0162 26 6 3.5834 -1.2073 0.0059 27 6 2.1985 -1.2036 0.0058 28 8 1.5162 -2.3789 0.0105 29 1 -0.3633 0.0046 1.0276 30 1 -0.3633 0.8878 -0.5179 31 1 -0.3633 -0.8922 -0.5099 32 1 1.6525 2.1323 0.0004 33 1 4.1107 2.1450 -0.0096 34 1 5.9412 2.0135 -0.0080 35 1 8.3173 0.3406 -0.0014 36 1 10.1382 0.2057 0.0065 37 1 12.5814 0.2051 -0.0035 38 1 14.7436 -0.3650 -1.6347 39 1 12.5685 4.5163 -0.0196 40 1 10.1253 4.5009 -0.0190 41 1 4.1227 -2.1430 0.0100 42 1 1.3186 -2.7156 0.8953 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001654792792.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:08 Heat of formation + Delta-G solvation = -63.037977 kcal Electronic energy + Delta-G solvation = -27040.653700 eV Core-core repulsion = 22950.600640 eV Total energy + Delta-G solvation = -4090.053060 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.126 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.81097 -40.90211 -40.02810 -38.93056 -37.58557 -36.50259 -35.73071 -34.07528 -32.97767 -31.55691 -31.32905 -30.87304 -28.42119 -27.49469 -24.40090 -23.75071 -23.60346 -22.84774 -22.27570 -21.57079 -19.88918 -19.40170 -18.99307 -18.40893 -17.64312 -17.21691 -16.85735 -16.68707 -16.42677 -16.21039 -15.88637 -15.74721 -15.58275 -15.22888 -15.09837 -14.76721 -14.54236 -14.21733 -13.95951 -13.76201 -13.30314 -13.27607 -13.20811 -12.92815 -12.87344 -12.71988 -12.49705 -12.46602 -12.37477 -11.83497 -11.82900 -11.42526 -11.40439 -11.14999 -10.97651 -10.01487 -9.79520 -9.65670 -9.57260 -9.33786 -8.83010 -6.52024 -0.39619 0.17409 0.33116 0.70276 1.12947 1.37132 1.41567 1.51792 1.53815 2.01915 2.15415 2.58859 2.72242 2.84232 3.22728 3.47860 3.64630 3.74668 3.89028 3.98189 4.08917 4.24553 4.28532 4.42208 4.52541 4.72844 4.83641 4.86402 4.90748 4.98785 5.07993 5.10478 5.15077 5.23308 5.24028 5.40527 5.48887 5.50544 5.60340 5.70536 5.81265 5.93762 5.96130 6.17895 6.45370 6.50305 6.72708 6.73777 6.78014 6.83936 7.29820 8.11502 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.026873 B = 0.001865 C = 0.001754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1041.676954 B =15008.897984 C =15962.625792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.080 4.080 3 C -0.105 4.105 4 C -0.088 4.088 5 C -0.131 4.131 6 C 0.556 3.444 7 O -0.575 6.575 8 N -0.508 5.508 9 N -0.530 5.530 10 C 0.580 3.420 11 O -0.590 6.590 12 C -0.290 4.290 13 C -0.057 4.057 14 C -0.197 4.197 15 C 0.102 3.898 16 C -0.464 4.464 17 H 0.091 0.909 18 C 0.036 3.964 19 N -0.795 5.795 20 Si 0.989 3.011 21 H -0.258 1.258 22 H -0.266 1.266 23 H -0.256 1.256 24 C -0.248 4.248 25 C -0.022 4.022 26 C -0.094 4.094 27 C 0.095 3.905 28 O -0.500 6.500 29 H 0.091 0.909 30 H 0.086 0.914 31 H 0.072 0.928 32 H 0.168 0.832 33 H 0.145 0.855 34 H 0.437 0.563 35 H 0.431 0.569 36 H 0.113 0.887 37 H 0.112 0.888 38 H 0.298 0.702 39 H 0.111 0.889 40 H 0.113 0.887 41 H 0.130 0.870 42 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.071 -2.795 3.624 22.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.081 4.081 3 C -0.123 4.123 4 C -0.107 4.107 5 C -0.136 4.136 6 C 0.345 3.655 7 O -0.454 6.454 8 N -0.255 5.255 9 N -0.278 5.278 10 C 0.375 3.625 11 O -0.473 6.473 12 C -0.296 4.296 13 C -0.076 4.076 14 C -0.216 4.216 15 C 0.098 3.902 16 C -0.491 4.491 17 H 0.109 0.891 18 C -0.184 4.184 19 N -0.418 5.418 20 Si 0.809 3.191 21 H -0.182 1.182 22 H -0.190 1.190 23 H -0.180 1.180 24 C -0.268 4.268 25 C -0.041 4.041 26 C -0.114 4.114 27 C 0.050 3.950 28 O -0.313 6.313 29 H 0.109 0.891 30 H 0.105 0.895 31 H 0.091 0.909 32 H 0.186 0.814 33 H 0.163 0.837 34 H 0.281 0.719 35 H 0.275 0.725 36 H 0.131 0.869 37 H 0.130 0.870 38 H 0.109 0.891 39 H 0.129 0.871 40 H 0.131 0.869 41 H 0.147 0.853 42 H 0.270 0.730 Dipole moment (debyes) X Y Z Total from point charges -22.016 -2.973 2.862 22.399 hybrid contribution 1.124 -0.456 0.415 1.282 sum -20.892 -3.429 3.277 21.424 Atomic orbital electron populations 1.20848 0.88080 1.04262 1.03941 1.20839 0.98655 0.91938 0.96634 1.21277 0.92909 0.98925 0.99197 1.21579 0.95611 0.96597 0.96913 1.19295 0.89284 0.95572 1.09421 1.18828 0.88397 0.81945 0.76300 1.90778 1.70210 1.31974 1.52441 1.44727 0.95145 1.10701 1.74952 1.44941 0.94411 1.10734 1.77756 1.18531 0.87830 0.81471 0.74640 1.90625 1.70180 1.31761 1.54701 1.18768 0.88966 0.94883 1.26961 1.20693 0.94568 0.95606 0.96734 1.20990 0.93139 0.98393 1.09094 1.18171 0.94217 0.91859 0.85908 1.20173 0.91853 1.02994 1.34087 0.89056 1.27001 1.06184 0.93582 0.91633 1.69767 1.41270 1.10560 1.20214 0.85127 0.74982 0.79117 0.79915 1.18163 1.19020 1.17968 1.20868 0.93490 0.97397 1.15025 1.20485 0.93816 0.96093 0.93717 1.21494 0.94214 0.97786 0.97857 1.18123 0.88561 0.86274 1.02031 1.84778 1.75357 1.35669 1.35491 0.89068 0.89534 0.90861 0.81440 0.83696 0.71880 0.72474 0.86929 0.86976 0.89075 0.87053 0.86884 0.85255 0.72979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.84 9.78 71.24 0.70 -0.14 16 2 C -0.08 -1.04 5.90 -19.71 -0.12 -1.16 16 3 C -0.11 -1.29 9.68 22.22 0.21 -1.08 16 4 C -0.09 -1.47 9.54 22.53 0.21 -1.26 16 5 C -0.13 -3.03 5.87 -20.10 -0.12 -3.15 16 6 C 0.56 16.76 7.89 86.79 0.68 17.45 16 7 O -0.57 -21.18 16.18 -3.87 -0.06 -21.24 16 8 N -0.51 -15.46 6.21 -175.60 -1.09 -16.55 16 9 N -0.53 -19.12 6.21 -175.73 -1.09 -20.21 16 10 C 0.58 24.00 7.88 86.73 0.68 24.69 16 11 O -0.59 -25.81 16.16 -3.99 -0.06 -25.87 16 12 C -0.29 -13.02 5.89 -19.93 -0.12 -13.14 16 13 C -0.06 -2.55 9.47 22.25 0.21 -2.34 16 14 C -0.20 -9.78 8.64 22.47 0.19 -9.59 16 15 C 0.10 5.19 5.58 -21.28 -0.12 5.07 16 16 C -0.46 -22.88 9.04 23.46 0.21 -22.67 16 17 H 0.09 4.24 7.91 -2.91 -0.02 4.22 16 18 C 0.04 1.64 5.14 85.35 0.44 2.07 16 19 N -0.80 -38.02 10.95 21.87 0.24 -37.78 16 20 Si 0.99 34.31 29.60 68.60 2.03 36.34 16 21 H -0.26 -8.79 7.11 99.48 0.71 -8.08 16 22 H -0.27 -8.76 7.11 99.48 0.71 -8.05 16 23 H -0.26 -8.58 7.11 99.48 0.71 -7.87 16 24 C -0.25 -11.82 9.73 22.47 0.22 -11.60 16 25 C -0.02 -1.00 9.52 22.25 0.21 -0.79 16 26 C -0.09 -2.07 9.53 22.63 0.22 -1.85 16 27 C 0.09 1.61 6.67 22.47 0.15 1.76 16 28 O -0.50 -7.00 12.53 -92.49 -1.16 -8.16 16 29 H 0.09 0.40 8.14 -2.39 -0.02 0.38 16 30 H 0.09 0.42 8.09 -2.38 -0.02 0.40 16 31 H 0.07 0.63 7.52 -2.39 -0.02 0.61 16 32 H 0.17 0.99 8.06 -2.91 -0.02 0.97 16 33 H 0.15 1.97 6.40 -2.91 -0.02 1.95 16 34 H 0.44 11.51 6.03 -213.32 -1.29 10.22 16 35 H 0.43 15.45 6.00 -213.32 -1.28 14.17 16 36 H 0.11 4.42 6.37 -2.91 -0.02 4.40 16 37 H 0.11 5.70 6.16 -2.91 -0.02 5.68 16 38 H 0.30 12.75 8.29 -92.71 -0.77 11.98 16 39 H 0.11 4.89 8.06 -2.91 -0.02 4.87 16 40 H 0.11 4.87 7.63 -2.91 -0.02 4.85 16 41 H 0.13 3.15 7.65 -2.91 -0.02 3.13 16 42 H 0.41 1.82 9.06 -74.05 -0.67 1.15 16 Total: -1.00 -66.79 366.27 0.57 -66.23 By element: Atomic # 1 Polarization: 47.09 SS G_CDS: -2.11 Total: 44.98 kcal Atomic # 6 Polarization: -21.60 SS G_CDS: 3.88 Total: -17.72 kcal Atomic # 7 Polarization: -72.60 SS G_CDS: -1.94 Total: -74.54 kcal Atomic # 8 Polarization: -53.99 SS G_CDS: -1.29 Total: -55.28 kcal Atomic # 14 Polarization: 34.31 SS G_CDS: 2.03 Total: 36.34 kcal Total: -66.79 0.57 -66.23 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001654792792.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.189 kcal (2) G-P(sol) polarization free energy of solvation -66.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.227 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds