Wall clock time and date at job start Sat Apr 11 2020 05:55:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.21283 * 119.99317 * 2 1 4 4 N 1.34772 * 120.00399 * 180.02562 * 2 1 3 5 5 C 1.39440 * 120.00248 * 185.27788 * 4 2 1 6 6 C 1.39137 * 119.92517 * 33.39887 * 5 4 2 7 7 C 1.37663 * 120.07534 * 180.23613 * 6 5 4 8 8 C 1.39763 * 119.92619 * 359.49707 * 7 6 5 9 9 C 1.47561 * 120.07900 * 180.27833 * 8 7 6 10 10 O 1.21602 * 119.99582 * 0.02562 * 9 8 7 11 11 N 1.34771 * 120.00113 * 179.97438 * 9 8 7 12 12 C 1.39851 * 119.99932 * 174.87163 * 11 9 8 13 13 C 1.38989 * 120.03492 * 326.44450 * 12 11 9 14 14 C 1.38153 * 120.05800 * 179.78899 * 13 12 11 15 15 C 1.38176 * 120.14487 * 0.46760 * 14 13 12 16 16 C 1.38904 * 120.07220 * 359.78464 * 15 14 13 17 17 O 1.35756 * 120.03105 * 179.97438 * 16 15 14 18 18 C 1.34829 * 116.99675 * 185.63253 * 17 16 15 19 19 H 1.08000 * 120.00374 * 354.87713 * 18 17 16 20 20 C 1.38659 * 119.99577 * 174.88227 * 18 17 16 21 21 N 1.31559 * 119.99686 * 179.97438 * 20 18 17 22 22 Si 1.86796 * 120.00100 * 359.97438 * 20 18 17 23 23 H 1.48499 * 109.47099 * 90.00510 * 22 20 18 24 24 H 1.48501 * 109.46955 * 210.00043 * 22 20 18 25 25 H 1.48504 * 109.46997 * 330.00023 * 22 20 18 26 26 C 1.38732 * 120.03972 * 146.72260 * 12 11 9 27 27 C 1.39761 * 119.84483 * 0.25048 * 8 7 6 28 28 C 1.37661 * 119.92828 * 0.02562 * 27 8 7 29 29 H 1.08999 * 109.46843 * 180.02562 * 1 2 3 30 30 H 1.09007 * 109.47428 * 299.99529 * 1 2 3 31 31 H 1.08996 * 109.47742 * 59.99806 * 1 2 3 32 32 H 0.97000 * 119.99613 * 5.27041 * 4 2 1 33 33 H 1.08005 * 119.96434 * 0.02562 * 6 5 4 34 34 H 1.08004 * 120.03569 * 179.77211 * 7 6 5 35 35 H 0.96993 * 120.00471 * 354.87850 * 11 9 8 36 36 H 1.07999 * 119.96994 * 0.02562 * 13 12 11 37 37 H 1.08000 * 119.93034 * 180.20873 * 14 13 12 38 38 H 1.08000 * 119.96191 * 179.76486 * 15 14 13 39 39 H 0.96998 * 120.00074 * 180.02562 * 21 20 18 40 40 H 1.08003 * 120.06675 * 359.95010 * 26 12 11 41 41 H 1.08005 * 120.03390 * 180.02562 * 27 8 7 42 42 H 1.08001 * 119.96428 * 180.02562 * 28 27 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0504 0.0000 4 7 2.1809 -1.1671 -0.0005 5 6 3.5709 -1.1697 0.1106 6 6 4.2080 -0.1962 0.8736 7 6 5.5804 -0.1929 0.9814 8 6 6.3332 -1.1752 0.3319 9 6 7.8041 -1.1785 0.4502 10 8 8.3625 -0.3261 1.1138 11 7 8.5284 -2.1268 -0.1763 12 6 9.9255 -2.0685 -0.1534 13 6 10.5705 -0.8374 -0.1513 14 6 11.9505 -0.7792 -0.1243 15 6 12.6939 -1.9439 -0.1090 16 6 12.0554 -3.1774 -0.1163 17 8 12.7866 -4.3211 -0.1018 18 6 12.1110 -5.4811 -0.2278 19 1 11.0312 -5.4775 -0.2507 20 6 12.8026 -6.6787 -0.3278 21 7 12.1434 -7.8107 -0.4502 22 14 14.6701 -6.6849 -0.2887 23 1 15.1354 -6.8201 1.1150 24 1 15.1782 -7.8269 -1.0906 25 1 15.1814 -5.4129 -0.8594 26 6 10.6693 -3.2395 -0.1386 27 6 5.6896 -2.1547 -0.4294 28 6 4.3172 -2.1488 -0.5376 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8901 31 1 -0.3634 0.5138 -0.8899 32 1 1.6990 -2.0053 -0.0781 33 1 3.6255 0.5599 1.3791 34 1 6.0746 0.5653 1.5708 35 1 8.0808 -2.8496 -0.6431 36 1 9.9923 0.0747 -0.1669 37 1 12.4495 0.1786 -0.1193 38 1 13.7727 -1.8950 -0.0918 39 1 12.6271 -8.6485 -0.5197 40 1 10.1705 -4.1975 -0.1439 41 1 6.2683 -2.9155 -0.9322 42 1 3.8192 -2.9056 -1.1254 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000046048076.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:31 Heat of formation + Delta-G solvation = -33.234544 kcal Electronic energy + Delta-G solvation = -27231.116347 eV Core-core repulsion = 23142.355661 eV Total energy + Delta-G solvation = -4088.760686 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.126 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.07218 -40.30138 -39.03770 -38.22055 -36.54880 -35.20624 -34.36025 -32.37046 -31.52819 -31.26967 -29.79179 -29.21676 -28.32970 -25.25252 -24.27267 -23.36144 -21.89029 -21.80444 -21.07490 -20.01370 -18.62772 -18.12816 -17.82113 -17.41587 -17.23100 -16.07517 -15.73781 -15.34072 -15.28919 -14.89143 -14.72139 -14.58900 -14.35500 -13.96825 -13.82993 -13.73400 -13.63888 -13.34867 -13.16867 -13.06709 -12.81859 -12.57754 -12.33013 -12.16845 -11.69743 -11.58018 -11.23181 -10.96204 -10.82054 -10.74474 -10.41432 -10.28696 -9.96969 -9.61951 -9.48389 -9.30098 -8.85893 -8.55207 -7.80360 -7.29591 -6.43359 -4.10531 0.48838 1.09181 1.88680 2.07076 2.28338 2.52919 2.89625 3.18764 3.22780 3.26140 3.40304 3.68640 4.15144 4.23076 4.47907 4.49383 4.56667 4.59545 4.66905 4.81773 4.85290 5.00185 5.07541 5.09188 5.15102 5.27506 5.60406 5.68723 5.75219 5.88513 5.91222 5.96587 6.04630 6.11018 6.16506 6.21662 6.48153 6.58190 6.82459 6.87552 6.92462 7.17935 7.20096 7.54857 7.55491 7.68201 7.76600 8.01231 8.26180 8.92253 9.54690 10.64298 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.020011 B = 0.002063 C = 0.001891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1398.884809 B =13570.451810 C =14806.914814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.509 3.491 3 O -0.521 6.521 4 N -0.674 5.674 5 C 0.167 3.833 6 C -0.131 4.131 7 C -0.037 4.037 8 C -0.147 4.147 9 C 0.557 3.443 10 O -0.518 6.518 11 N -0.664 5.664 12 C 0.180 3.820 13 C -0.197 4.197 14 C -0.064 4.064 15 C -0.200 4.200 16 C 0.174 3.826 17 O -0.216 6.216 18 C -0.389 4.389 19 H 0.105 0.895 20 C 0.063 3.937 21 N -0.881 5.881 22 Si 0.905 3.095 23 H -0.273 1.273 24 H -0.283 1.283 25 H -0.259 1.259 26 C -0.244 4.244 27 C -0.063 4.063 28 C -0.153 4.153 29 H 0.079 0.921 30 H 0.100 0.900 31 H 0.099 0.901 32 H 0.414 0.586 33 H 0.140 0.860 34 H 0.141 0.859 35 H 0.407 0.593 36 H 0.122 0.878 37 H 0.118 0.882 38 H 0.119 0.881 39 H 0.279 0.721 40 H 0.137 0.863 41 H 0.134 0.866 42 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.953 10.788 -0.790 25.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.298 3.702 3 O -0.396 6.396 4 N -0.320 5.320 5 C 0.072 3.928 6 C -0.151 4.151 7 C -0.056 4.056 8 C -0.151 4.151 9 C 0.346 3.654 10 O -0.394 6.394 11 N -0.309 5.309 12 C 0.087 3.913 13 C -0.218 4.218 14 C -0.083 4.083 15 C -0.219 4.219 16 C 0.122 3.878 17 O -0.121 6.121 18 C -0.465 4.465 19 H 0.122 0.878 20 C -0.140 4.140 21 N -0.519 5.519 22 Si 0.731 3.269 23 H -0.199 1.199 24 H -0.209 1.209 25 H -0.183 1.183 26 C -0.265 4.265 27 C -0.083 4.083 28 C -0.173 4.173 29 H 0.098 0.902 30 H 0.119 0.881 31 H 0.118 0.882 32 H 0.250 0.750 33 H 0.158 0.842 34 H 0.159 0.841 35 H 0.243 0.757 36 H 0.139 0.861 37 H 0.136 0.864 38 H 0.137 0.863 39 H 0.089 0.911 40 H 0.154 0.846 41 H 0.151 0.849 42 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -21.996 11.900 -0.317 25.011 hybrid contribution 0.049 -1.238 -0.307 1.276 sum -21.947 10.662 -0.624 24.408 Atomic orbital electron populations 1.21867 0.90423 1.04718 1.05900 1.21089 0.91029 0.83091 0.75029 1.90785 1.70462 1.31149 1.47169 1.43668 1.05310 1.10221 1.72754 1.17934 0.82836 0.96659 0.95354 1.21085 0.94495 0.99997 0.99555 1.21166 0.92702 0.96242 0.95497 1.19919 0.92792 0.98946 1.03398 1.18214 0.86697 0.81507 0.78976 1.90799 1.72254 1.37335 1.38994 1.43380 1.05444 1.28453 1.53590 1.17402 0.80901 0.93979 0.99003 1.20634 0.94372 0.96124 1.10655 1.20537 0.93054 0.96923 0.97776 1.20257 0.99682 0.89983 1.12011 1.18787 0.89352 0.86907 0.92772 1.83602 1.35679 1.12387 1.80447 1.20724 0.93283 0.80812 1.51663 0.87777 1.24461 1.00341 0.93614 0.95577 1.69641 1.36728 0.97795 1.47730 0.86176 0.83541 0.78429 0.78750 1.19893 1.20853 1.18276 1.20922 0.93955 0.97526 1.14115 1.21151 0.94138 0.96846 0.96131 1.20791 0.93776 1.00844 1.01895 0.90188 0.88134 0.88227 0.74992 0.84245 0.84085 0.75678 0.86057 0.86367 0.86343 0.91081 0.84595 0.84872 0.84875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.44 10.39 36.00 0.37 -0.07 16 2 C 0.51 3.63 7.67 -10.99 -0.08 3.55 16 3 O -0.52 -6.17 14.77 5.55 0.08 -6.09 16 4 N -0.67 -4.02 5.32 -9.86 -0.05 -4.07 16 5 C 0.17 1.51 6.28 -83.73 -0.53 0.98 16 6 C -0.13 -1.43 8.63 -39.46 -0.34 -1.77 16 7 C -0.04 -0.44 9.58 -39.22 -0.38 -0.82 16 8 C -0.15 -1.84 5.88 -104.96 -0.62 -2.46 16 9 C 0.56 8.80 7.50 -12.46 -0.09 8.71 16 10 O -0.52 -9.81 14.03 5.28 0.07 -9.73 16 11 N -0.66 -10.38 5.28 -10.81 -0.06 -10.44 16 12 C 0.18 3.45 6.27 -83.74 -0.53 2.93 16 13 C -0.20 -3.74 8.65 -39.33 -0.34 -4.08 16 14 C -0.06 -1.16 10.03 -39.64 -0.40 -1.56 16 15 C -0.20 -4.03 9.99 -39.36 -0.39 -4.43 16 16 C 0.17 4.04 6.64 -39.14 -0.26 3.78 16 17 O -0.22 -5.66 8.58 0.03 0.00 -5.66 16 18 C -0.39 -10.79 9.95 30.89 0.31 -10.48 16 19 H 0.10 2.92 5.43 -52.49 -0.29 2.63 16 20 C 0.06 1.75 5.49 -17.51 -0.10 1.65 16 21 N -0.88 -25.03 13.96 55.48 0.77 -24.25 16 22 Si 0.91 21.53 28.62 -169.99 -4.86 16.66 16 23 H -0.27 -6.42 7.11 56.52 0.40 -6.01 16 24 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 25 H -0.26 -6.17 7.11 56.52 0.40 -5.77 16 26 C -0.24 -5.23 9.08 -39.20 -0.36 -5.59 16 27 C -0.06 -0.62 9.53 -39.22 -0.37 -0.99 16 28 C -0.15 -1.25 9.94 -39.46 -0.39 -1.64 16 29 H 0.08 0.00 7.92 -51.93 -0.41 -0.41 16 30 H 0.10 0.22 8.14 -51.93 -0.42 -0.20 16 31 H 0.10 0.22 8.14 -51.93 -0.42 -0.20 16 32 H 0.41 0.94 8.66 -40.82 -0.35 0.58 16 33 H 0.14 1.55 6.40 -52.48 -0.34 1.22 16 34 H 0.14 1.73 7.64 -52.48 -0.40 1.33 16 35 H 0.41 5.10 6.85 -40.82 -0.28 4.82 16 36 H 0.12 2.26 6.42 -52.49 -0.34 1.93 16 37 H 0.12 1.76 8.06 -52.49 -0.42 1.34 16 38 H 0.12 2.20 8.06 -52.49 -0.42 1.78 16 39 H 0.28 7.34 8.31 -40.82 -0.34 7.00 16 40 H 0.14 2.97 5.64 -52.48 -0.30 2.68 16 41 H 0.13 1.05 6.41 -52.48 -0.34 0.71 16 42 H 0.13 0.71 8.06 -52.49 -0.42 0.29 16 LS Contribution 363.51 15.07 5.48 5.48 Total: -1.00 -35.43 363.51 -7.34 -42.77 By element: Atomic # 1 Polarization: 11.92 SS G_CDS: -4.28 Total: 7.63 kcal Atomic # 6 Polarization: -7.81 SS G_CDS: -4.49 Total: -12.30 kcal Atomic # 7 Polarization: -39.43 SS G_CDS: 0.67 Total: -38.76 kcal Atomic # 8 Polarization: -21.64 SS G_CDS: 0.16 Total: -21.48 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -4.86 Total: 16.66 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -35.43 -7.34 -42.77 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000046048076.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.534 kcal (2) G-P(sol) polarization free energy of solvation -35.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.769 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds