Wall clock time and date at job start Sat Apr 11 2020 05:55:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13596 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 C 1.53000 * 109.47449 * 77.03188 * 3 2 1 5 5 N 1.46493 * 109.47637 * 179.97438 * 4 3 2 6 6 C 1.46494 * 120.00444 * 269.72749 * 5 4 3 7 7 C 1.50694 * 109.47248 * 270.27463 * 6 5 4 8 8 H 1.07999 * 119.99904 * 359.97438 * 7 6 5 9 9 C 1.37883 * 120.00385 * 179.97438 * 7 6 5 10 10 N 1.31514 * 119.99650 * 0.02562 * 9 7 6 11 11 Si 1.86794 * 120.00268 * 180.02562 * 9 7 6 12 12 H 1.48501 * 109.47003 * 359.97438 * 11 9 7 13 13 H 1.48498 * 109.47185 * 120.00431 * 11 9 7 14 14 H 1.48507 * 109.47178 * 240.00326 * 11 9 7 15 15 C 1.34784 * 119.99864 * 90.00039 * 5 4 3 16 16 O 1.21279 * 119.99925 * 179.72608 * 15 5 4 17 17 C 1.50700 * 119.99961 * 359.72839 * 15 5 4 18 18 N 1.46497 * 109.47128 * 180.02562 * 17 15 5 19 19 N 1.28160 * 118.82028 * 90.00001 * 18 17 15 20 20 C 1.30045 * 124.55275 * 179.97438 * 19 18 17 21 21 C 1.42149 * 120.32060 * 359.97438 * 20 19 18 22 22 O 1.21985 * 121.73088 * 180.02562 * 21 20 19 23 23 C 1.47286 * 116.54364 * 0.02562 * 21 20 19 24 24 C 1.39296 * 122.38028 * 179.97438 * 23 21 20 25 25 C 1.36729 * 119.47992 * 180.02562 * 24 23 21 26 26 C 1.38907 * 120.58650 * 359.97438 * 25 24 23 27 27 C 1.37715 * 120.85637 * 0.02562 * 26 25 24 28 28 C 1.37214 * 118.81568 * 269.73165 * 18 17 15 29 29 H 1.09002 * 109.47545 * 317.03188 * 3 2 1 30 30 H 1.08996 * 109.47177 * 197.03363 * 3 2 1 31 31 H 1.09002 * 109.46747 * 59.99512 * 4 3 2 32 32 H 1.08996 * 109.47074 * 300.00238 * 4 3 2 33 33 H 1.09003 * 109.47006 * 30.27410 * 6 5 4 34 34 H 1.09004 * 109.47665 * 150.27102 * 6 5 4 35 35 H 0.96998 * 120.00151 * 180.02562 * 10 9 7 36 36 H 1.09004 * 109.46932 * 300.00223 * 17 15 5 37 37 H 1.08997 * 109.47392 * 59.99562 * 17 15 5 38 38 H 1.08003 * 119.84460 * 179.97438 * 20 19 18 39 39 H 1.08001 * 120.25528 * 359.97438 * 24 23 21 40 40 H 1.08006 * 119.70343 * 180.02562 * 25 24 23 41 41 H 1.07999 * 119.57441 * 180.02562 * 26 25 24 42 42 H 1.07996 * 120.21797 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6079 0.0007 0.0000 4 6 3.1182 -0.3228 -1.4057 5 7 4.5831 -0.3216 -1.4059 6 6 5.3146 0.9139 -1.6967 7 6 5.5596 1.0153 -3.1801 8 1 5.2062 0.2370 -3.8402 9 6 6.2350 2.1016 -3.6948 10 7 6.6658 3.0491 -2.8909 11 14 6.5381 2.2276 -5.5336 12 1 5.9582 1.0414 -6.2133 13 1 5.8982 3.4610 -6.0575 14 1 7.9996 2.2801 -5.7920 15 6 5.2580 -1.4585 -1.1438 16 8 6.4708 -1.4586 -1.1489 17 6 4.5056 -2.7295 -0.8447 18 7 5.4585 -3.8139 -0.5954 19 7 5.8644 -4.0162 0.6033 20 6 6.7062 -4.9449 0.9500 21 6 7.2453 -5.8258 -0.0267 22 8 8.0361 -6.7060 0.2700 23 6 6.7996 -5.6209 -1.4154 24 6 7.2508 -6.4135 -2.4683 25 6 6.7982 -6.1705 -3.7354 26 6 5.8951 -5.1435 -3.9786 27 6 5.4366 -4.3484 -2.9519 28 6 5.8800 -4.5800 -1.6528 29 1 2.9717 -0.7511 0.7004 30 1 2.9708 0.9834 0.3010 31 1 2.7544 0.4290 -2.1061 32 1 2.7553 -1.3055 -1.7067 33 1 4.7270 1.7704 -1.3662 34 1 6.2692 0.9035 -1.1706 35 1 7.1406 3.8136 -3.2529 36 1 3.8825 -2.5837 0.0378 37 1 3.8753 -2.9875 -1.6957 38 1 6.9971 -5.0473 1.9851 39 1 7.9533 -7.2132 -2.2853 40 1 7.1454 -6.7831 -4.5544 41 1 5.5480 -4.9662 -4.9858 42 1 4.7341 -3.5530 -3.1526 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000050516180.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:33 Heat of formation + Delta-G solvation = 23.561963 kcal Electronic energy + Delta-G solvation = -28948.531307 eV Core-core repulsion = 24894.526254 eV Total energy + Delta-G solvation = -4054.005054 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.132 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.91705 -40.79884 -39.43812 -39.03424 -37.96923 -36.72309 -35.08758 -34.65479 -32.28507 -32.16663 -31.75049 -30.21747 -28.35653 -25.94231 -25.34187 -25.29617 -24.71368 -22.69285 -20.45570 -20.21210 -19.57691 -18.86360 -18.49860 -18.36162 -18.04939 -17.22032 -16.74402 -16.57252 -16.29579 -16.05244 -15.92559 -15.64471 -15.39237 -15.21481 -15.04322 -14.78362 -14.59016 -14.33657 -14.10694 -13.62234 -13.56287 -13.51272 -13.34058 -13.16838 -13.10910 -12.89868 -12.70227 -12.67562 -12.54376 -12.17364 -12.15198 -11.83537 -11.63371 -11.09505 -10.65800 -10.58276 -10.52619 -10.18296 -9.53647 -8.89581 -8.17271 -6.28641 -0.51816 -0.16759 0.58297 1.08272 1.40528 1.43889 1.52829 1.62621 1.83038 1.90219 1.92741 2.23230 2.44592 2.79787 3.03670 3.10244 3.17133 3.22480 3.54187 3.61712 3.71264 3.91652 4.07585 4.13893 4.16392 4.22483 4.23441 4.28606 4.51300 4.60376 4.66957 4.84781 4.87624 4.94307 5.07798 5.09546 5.30759 5.32951 5.36318 5.40106 5.59383 5.78296 5.85573 6.12587 6.44295 6.62595 6.68371 6.82236 7.09035 7.28727 7.44680 8.89937 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.008481 B = 0.004071 C = 0.003214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3300.688796 B = 6875.635473 C = 8709.411304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.491 5.491 2 C 0.246 3.754 3 C -0.042 4.042 4 C 0.106 3.894 5 N -0.587 5.587 6 C 0.260 3.740 7 C -0.534 4.534 8 H 0.062 0.938 9 C 0.010 3.990 10 N -0.928 5.928 11 Si 0.954 3.046 12 H -0.261 1.261 13 H -0.276 1.276 14 H -0.292 1.292 15 C 0.490 3.510 16 O -0.578 6.578 17 C 0.094 3.906 18 N -0.319 5.319 19 N -0.173 5.173 20 C -0.058 4.058 21 C 0.383 3.617 22 O -0.518 6.518 23 C -0.235 4.235 24 C -0.045 4.045 25 C -0.148 4.148 26 C -0.046 4.046 27 C -0.168 4.168 28 C 0.148 3.852 29 H 0.140 0.860 30 H 0.119 0.881 31 H 0.091 0.909 32 H 0.118 0.882 33 H 0.038 0.962 34 H 0.000 1.000 35 H 0.263 0.737 36 H 0.170 0.830 37 H 0.164 0.836 38 H 0.214 0.786 39 H 0.140 0.860 40 H 0.163 0.837 41 H 0.168 0.832 42 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.484 -15.058 0.979 17.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.169 5.169 2 C -0.071 4.071 3 C -0.083 4.083 4 C -0.018 4.018 5 N -0.317 5.317 6 C 0.139 3.861 7 C -0.573 4.573 8 H 0.080 0.920 9 C -0.189 4.189 10 N -0.568 5.568 11 Si 0.780 3.220 12 H -0.184 1.184 13 H -0.202 1.202 14 H -0.218 1.218 15 C 0.276 3.724 16 O -0.457 6.457 17 C -0.029 4.029 18 N -0.118 5.118 19 N 0.002 4.998 20 C -0.253 4.253 21 C 0.269 3.731 22 O -0.398 6.398 23 C -0.240 4.240 24 C -0.063 4.063 25 C -0.166 4.166 26 C -0.065 4.065 27 C -0.189 4.189 28 C 0.044 3.956 29 H 0.158 0.842 30 H 0.137 0.863 31 H 0.110 0.890 32 H 0.136 0.864 33 H 0.056 0.944 34 H 0.018 0.982 35 H 0.072 0.928 36 H 0.187 0.813 37 H 0.182 0.818 38 H 0.230 0.770 39 H 0.158 0.842 40 H 0.181 0.819 41 H 0.186 0.814 42 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -9.595 -14.602 1.490 17.536 hybrid contribution 1.663 0.281 -1.112 2.020 sum -7.932 -14.321 0.378 16.375 Atomic orbital electron populations 1.81282 1.14561 1.10958 1.10064 1.29116 0.94893 0.91374 0.91706 1.19877 0.80069 1.07978 1.00381 1.21703 0.78345 1.05877 0.95897 1.48020 1.07000 1.09486 1.67245 1.18833 0.91446 0.81197 0.94607 1.21781 1.36026 1.05723 0.93724 0.92025 1.25708 0.95395 0.95627 1.02143 1.70031 1.39298 1.10943 1.36536 0.85564 0.77393 0.78476 0.80579 1.18440 1.20200 1.21816 1.21192 0.87980 0.85930 0.77288 1.90765 1.16437 1.85497 1.52960 1.22415 0.89584 0.81709 1.09215 1.44187 1.38973 1.27691 1.00977 1.69994 1.09466 1.16431 1.03947 1.25231 1.00700 0.96130 1.03278 1.19667 0.80602 0.83868 0.89008 1.90686 1.31743 1.33172 1.84181 1.20543 1.04217 1.01658 0.97559 1.20950 0.96569 0.96858 0.91937 1.21320 0.98805 0.99584 0.96936 1.21674 0.93063 0.91688 1.00112 1.21163 1.04821 1.03286 0.89670 1.18976 0.94995 0.91427 0.90173 0.84243 0.86264 0.89012 0.86426 0.94398 0.98199 0.92763 0.81290 0.81842 0.76986 0.84244 0.81939 0.81414 0.82756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -11.79 18.54 20.00 0.37 -11.42 16 2 C 0.25 4.25 15.43 89.44 1.38 5.63 16 3 C -0.04 -0.54 6.03 28.79 0.17 -0.36 16 4 C 0.11 1.84 5.17 86.38 0.45 2.28 16 5 N -0.59 -17.36 2.46 -826.18 -2.03 -19.39 16 6 C 0.26 11.39 5.16 85.63 0.44 11.83 16 7 C -0.53 -26.39 9.39 25.60 0.24 -26.15 16 8 H 0.06 2.94 7.81 -2.91 -0.02 2.92 16 9 C 0.01 0.54 5.46 84.66 0.46 1.00 16 10 N -0.93 -51.94 13.29 21.45 0.28 -51.66 16 11 Si 0.95 41.35 29.54 68.60 2.03 43.37 16 12 H -0.26 -10.63 7.11 99.48 0.71 -9.92 16 13 H -0.28 -11.60 7.11 99.48 0.71 -10.89 16 14 H -0.29 -12.99 7.11 99.48 0.71 -12.28 16 15 C 0.49 14.91 7.74 87.66 0.68 15.59 16 16 O -0.58 -25.41 16.01 -3.03 -0.05 -25.46 16 17 C 0.09 1.71 4.34 85.63 0.37 2.08 16 18 N -0.32 -7.94 2.78 -343.20 -0.95 -8.89 16 19 N -0.17 -4.51 10.73 -55.89 -0.60 -5.11 16 20 C -0.06 -1.53 11.34 85.93 0.97 -0.55 16 21 C 0.38 11.80 7.01 25.62 0.18 11.98 16 22 O -0.52 -18.23 17.52 -5.27 -0.09 -18.33 16 23 C -0.23 -6.70 5.90 -19.99 -0.12 -6.82 16 24 C -0.04 -1.07 9.66 22.17 0.21 -0.85 16 25 C -0.15 -2.65 9.98 22.08 0.22 -2.43 16 26 C -0.05 -0.80 10.00 22.31 0.22 -0.58 16 27 C -0.17 -3.53 9.20 22.38 0.21 -3.33 16 28 C 0.15 3.87 6.56 39.19 0.26 4.13 16 29 H 0.14 0.98 7.20 -2.39 -0.02 0.97 16 30 H 0.12 1.69 8.14 -2.39 -0.02 1.67 16 31 H 0.09 1.84 8.07 -2.39 -0.02 1.82 16 32 H 0.12 1.07 6.44 -2.39 -0.02 1.05 16 33 H 0.04 1.65 8.07 -2.39 -0.02 1.63 16 34 H 0.00 -0.01 7.42 -2.38 -0.02 -0.02 16 35 H 0.26 14.08 8.31 -92.71 -0.77 13.31 16 36 H 0.17 1.68 7.16 -2.38 -0.02 1.67 16 37 H 0.16 1.69 5.42 -2.39 -0.01 1.67 16 38 H 0.21 4.31 8.06 -2.91 -0.02 4.28 16 39 H 0.14 3.16 7.88 -2.91 -0.02 3.14 16 40 H 0.16 1.83 8.06 -2.91 -0.02 1.80 16 41 H 0.17 1.76 8.06 -2.91 -0.02 1.74 16 42 H 0.15 2.56 6.23 -2.91 -0.02 2.54 16 Total: -1.00 -82.72 372.87 6.39 -76.34 By element: Atomic # 1 Polarization: 6.02 SS G_CDS: 1.08 Total: 7.09 kcal Atomic # 6 Polarization: 7.10 SS G_CDS: 6.35 Total: 13.45 kcal Atomic # 7 Polarization: -93.54 SS G_CDS: -2.93 Total: -96.47 kcal Atomic # 8 Polarization: -43.65 SS G_CDS: -0.14 Total: -43.79 kcal Atomic # 14 Polarization: 41.35 SS G_CDS: 2.03 Total: 43.37 kcal Total: -82.72 6.39 -76.34 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050516180.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.898 kcal (2) G-P(sol) polarization free energy of solvation -82.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.336 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds