Wall clock time and date at job start Sat Apr 11 2020 05:55:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46499 * 109.47055 * 2 1 4 4 C 1.46500 * 120.00123 * 270.00331 * 3 2 1 5 5 C 1.50702 * 109.46904 * 269.99929 * 4 3 2 6 6 H 1.07993 * 120.00490 * 0.02562 * 5 4 3 7 7 C 1.37881 * 119.99735 * 180.02562 * 5 4 3 8 8 N 1.31512 * 120.00050 * 359.97438 * 7 5 4 9 9 Si 1.86794 * 119.99825 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47634 * 59.99423 * 9 7 5 11 11 H 1.48503 * 109.47157 * 179.97438 * 9 7 5 12 12 H 1.48498 * 109.47225 * 299.99175 * 9 7 5 13 13 C 1.34779 * 119.99707 * 90.00663 * 3 2 1 14 14 O 1.21282 * 119.99922 * 180.02562 * 13 3 2 15 15 C 1.50699 * 120.00037 * 359.97438 * 13 3 2 16 16 O 1.45206 * 109.47021 * 180.02562 * 15 13 3 17 17 C 1.34224 * 117.00077 * 180.02562 * 16 15 13 18 18 O 1.20833 * 120.00103 * 359.97438 * 17 16 15 19 19 C 1.50696 * 120.00302 * 180.02562 * 17 16 15 20 20 N 1.46506 * 109.47418 * 180.02562 * 19 17 16 21 21 C 1.34939 * 126.03980 * 124.71238 * 20 19 17 22 22 C 1.35312 * 107.74733 * 179.83888 * 21 20 19 23 23 C 1.39868 * 107.91791 * 0.42082 * 22 21 20 24 24 N 1.48026 * 125.89896 * 179.75500 * 23 22 21 25 25 O 1.21805 * 120.00092 * 180.02562 * 24 23 22 26 26 O 1.21802 * 120.00035 * 0.02562 * 24 23 22 27 27 N 1.30837 * 108.20351 * 359.74260 * 23 22 21 28 28 H 1.09001 * 109.47495 * 59.99636 * 1 2 3 29 29 H 1.08998 * 109.46821 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.46447 * 299.99424 * 1 2 3 31 31 H 1.09002 * 109.47160 * 240.00485 * 2 1 3 32 32 H 1.09001 * 109.47495 * 120.00364 * 2 1 3 33 33 H 1.08991 * 109.47410 * 30.00046 * 4 3 2 34 34 H 1.09007 * 109.47039 * 150.00320 * 4 3 2 35 35 H 0.97004 * 119.99848 * 180.02562 * 8 7 5 36 36 H 1.09000 * 109.47247 * 60.00371 * 15 13 3 37 37 H 1.09001 * 109.47358 * 299.99798 * 15 13 3 38 38 H 1.09009 * 109.46972 * 299.99362 * 19 17 16 39 39 H 1.08995 * 109.47473 * 59.99636 * 19 17 16 40 40 H 1.08003 * 126.12656 * 359.97438 * 21 20 19 41 41 H 1.08003 * 126.04100 * 180.16416 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2624 2.0719 -1.2687 5 6 3.6857 1.8351 -1.7038 6 1 4.3426 1.2303 -1.0963 7 6 4.1492 2.3906 -2.8775 8 7 3.3492 3.1267 -3.6175 9 14 5.9132 2.0966 -3.4171 10 1 6.1401 0.6399 -3.5955 11 1 6.1607 2.7968 -4.7031 12 1 6.8411 2.6189 -2.3821 13 6 2.2430 2.0165 1.1673 14 8 2.6468 3.1601 1.1673 15 6 1.9914 1.3062 2.4723 16 8 2.3056 2.1959 3.5760 17 6 2.1347 1.7121 4.8163 18 8 1.7354 0.5827 4.9747 19 6 2.4398 2.5779 6.0115 20 7 2.1747 1.8252 7.2402 21 6 3.0502 1.6108 8.2443 22 6 2.4200 0.8786 9.1917 23 6 1.1176 0.6290 8.7470 24 7 0.0850 -0.1430 9.4744 25 8 -1.0196 -0.2952 8.9842 26 8 0.3400 -0.6260 10.5630 27 7 0.9694 1.1959 7.5772 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3632 0.5138 0.8901 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 1.5816 1.6879 -2.0283 34 1 2.0955 3.1412 -1.1383 35 1 3.6753 3.5172 -4.4435 36 1 2.6213 0.4185 2.5302 37 1 0.9433 1.0124 2.5300 38 1 3.4884 2.8748 5.9869 39 1 1.8097 3.4669 5.9865 40 1 4.0705 1.9627 8.2856 41 1 2.8483 0.5424 10.1244 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000051719227.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:42 Heat of formation + Delta-G solvation = -17.565452 kcal Electronic energy + Delta-G solvation = -28590.433005 eV Core-core repulsion = 24091.502519 eV Total energy + Delta-G solvation = -4498.930486 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.131 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.84810 -41.93485 -40.80752 -39.12275 -36.92719 -36.81466 -35.44846 -34.53078 -32.93262 -31.41727 -30.32559 -30.06958 -28.98176 -27.01729 -26.26030 -23.21302 -23.01847 -22.40544 -22.23606 -21.27218 -19.28714 -18.92710 -18.85847 -18.39351 -17.98262 -17.65376 -17.16552 -16.65323 -16.50817 -16.22200 -15.59347 -15.27623 -14.82050 -14.57869 -14.42068 -14.29499 -13.73393 -13.58941 -13.27744 -12.94757 -12.73301 -12.27175 -12.14668 -12.01382 -11.96797 -11.74459 -11.64762 -11.49468 -11.33565 -11.24100 -11.08937 -11.00996 -10.76918 -10.64196 -10.59541 -10.23596 -9.78822 -9.77540 -9.16466 -8.52653 -7.88015 -6.13910 -4.19368 -0.31986 0.29299 0.89060 1.53066 1.64564 1.83020 2.16183 3.08538 3.25195 3.30066 3.32466 3.47565 3.62521 3.85247 4.22653 4.31060 4.32885 4.36955 4.57467 4.58519 4.68353 4.94585 5.02028 5.15221 5.20652 5.23766 5.48838 5.63609 5.74457 5.88350 5.91698 5.97977 6.10538 6.22035 6.36375 6.87490 7.21139 7.28572 7.29941 7.36860 7.81159 8.10722 8.16315 8.71026 8.87369 9.45752 10.94192 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.021538 B = 0.002040 C = 0.001936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1299.690369 B =13724.482936 C =14458.877350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.101 3.899 3 N -0.590 5.590 4 C 0.248 3.752 5 C -0.531 4.531 6 H 0.057 0.943 7 C 0.062 3.938 8 N -0.893 5.893 9 Si 0.900 3.100 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.276 1.276 13 C 0.507 3.493 14 O -0.519 6.519 15 C 0.052 3.948 16 O -0.323 6.323 17 C 0.446 3.554 18 O -0.483 6.483 19 C 0.140 3.860 20 N -0.328 5.328 21 C 0.079 3.921 22 C -0.211 4.211 23 C 0.119 3.881 24 N 0.057 4.943 25 O -0.125 6.125 26 O -0.132 6.132 27 N -0.183 5.183 28 H 0.064 0.936 29 H 0.063 0.937 30 H 0.049 0.951 31 H 0.089 0.911 32 H 0.063 0.937 33 H 0.037 0.963 34 H 0.045 0.955 35 H 0.265 0.735 36 H 0.098 0.902 37 H 0.099 0.901 38 H 0.158 0.842 39 H 0.145 0.855 40 H 0.205 0.795 41 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.076 -3.501 22.850 23.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.023 4.023 3 N -0.323 5.323 4 C 0.130 3.870 5 C -0.570 4.570 6 H 0.075 0.925 7 C -0.141 4.141 8 N -0.532 5.532 9 Si 0.727 3.273 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.202 1.202 13 C 0.291 3.709 14 O -0.395 6.395 15 C -0.025 4.025 16 O -0.237 6.237 17 C 0.285 3.715 18 O -0.369 6.369 19 C 0.019 3.981 20 N -0.118 5.118 21 C -0.065 4.065 22 C -0.242 4.242 23 C -0.126 4.126 24 N 0.583 4.417 25 O -0.346 6.346 26 O -0.348 6.348 27 N -0.014 5.014 28 H 0.083 0.917 29 H 0.082 0.918 30 H 0.069 0.931 31 H 0.107 0.893 32 H 0.082 0.918 33 H 0.055 0.945 34 H 0.063 0.937 35 H 0.075 0.925 36 H 0.116 0.884 37 H 0.117 0.883 38 H 0.176 0.824 39 H 0.163 0.837 40 H 0.222 0.778 41 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -1.254 -2.494 21.276 21.458 hybrid contribution 1.195 -0.750 0.257 1.434 sum -0.059 -3.244 21.533 21.776 Atomic orbital electron populations 1.22235 0.96367 1.01847 1.02467 1.21532 0.93877 0.83833 1.03080 1.48228 1.63527 1.13445 1.07102 1.19353 0.96552 0.93698 0.77436 1.21360 0.96786 1.32300 1.06512 0.92471 1.24937 0.97973 0.94821 0.96320 1.69915 1.35775 1.33122 1.14339 0.86534 0.84573 0.78294 0.77872 1.20220 1.21107 1.20171 1.19625 0.79888 0.87151 0.84193 1.90722 1.44693 1.17406 1.86697 1.23089 1.03107 0.92438 0.83905 1.86505 1.78339 1.45103 1.13734 1.23248 0.75972 0.87087 0.85195 1.90797 1.40424 1.19246 1.86387 1.21351 1.07327 0.92709 0.76741 1.48267 1.07850 1.39981 1.15660 1.22873 0.97688 0.98826 0.87114 1.21280 0.91327 1.07148 1.04403 1.22732 0.90999 1.03813 0.95017 1.42228 1.00439 0.98871 1.00138 1.94644 1.07126 1.62514 1.70290 1.94581 1.85970 1.48582 1.05649 1.77547 1.03808 1.09153 1.10936 0.91673 0.91785 0.93147 0.89272 0.91826 0.94528 0.93654 0.92533 0.88416 0.88345 0.82425 0.83715 0.77803 0.80363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.18 10.24 37.16 0.38 -1.80 16 2 C 0.10 1.51 5.93 -4.04 -0.02 1.49 16 3 N -0.59 -11.72 2.46 -175.06 -0.43 -12.15 16 4 C 0.25 6.17 5.16 -5.19 -0.03 6.15 16 5 C -0.53 -14.45 9.39 -34.44 -0.32 -14.77 16 6 H 0.06 1.55 7.81 -52.49 -0.41 1.14 16 7 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 8 N -0.89 -25.73 13.29 55.43 0.74 -24.99 16 9 Si 0.90 21.16 29.54 -169.99 -5.02 16.14 16 10 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 11 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 12 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 13 C 0.51 9.97 7.75 -10.99 -0.09 9.88 16 14 O -0.52 -12.46 16.08 -14.11 -0.23 -12.69 16 15 C 0.05 0.75 4.50 36.01 0.16 0.92 16 16 O -0.32 -4.38 9.75 -45.89 -0.45 -4.83 16 17 C 0.45 4.91 7.99 36.00 0.29 5.20 16 18 O -0.48 -6.87 15.45 -18.76 -0.29 -7.16 16 19 C 0.14 0.81 7.10 -5.19 -0.04 0.77 16 20 N -0.33 -2.55 3.40 -62.55 -0.21 -2.77 16 21 C 0.08 0.37 11.45 -17.23 -0.20 0.18 16 22 C -0.21 -1.47 10.52 -40.01 -0.42 -1.89 16 23 C 0.12 1.32 8.15 -146.40 -1.19 0.13 16 24 N 0.06 0.71 4.45 33.02 0.15 0.86 16 25 O -0.13 -1.77 19.23 -29.46 -0.57 -2.34 16 26 O -0.13 -1.57 19.04 -29.46 -0.56 -2.13 16 27 N -0.18 -2.18 11.61 33.02 0.38 -1.80 16 28 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 29 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 30 H 0.05 0.62 7.22 -51.93 -0.37 0.24 16 31 H 0.09 1.38 8.07 -51.93 -0.42 0.96 16 32 H 0.06 0.79 6.44 -51.93 -0.33 0.46 16 33 H 0.04 0.92 8.07 -51.93 -0.42 0.50 16 34 H 0.05 1.28 7.42 -51.93 -0.39 0.89 16 35 H 0.27 7.23 8.31 -40.82 -0.34 6.89 16 36 H 0.10 1.28 7.39 -51.93 -0.38 0.89 16 37 H 0.10 1.28 7.18 -51.93 -0.37 0.91 16 38 H 0.16 0.21 8.07 -51.92 -0.42 -0.21 16 39 H 0.15 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.21 -0.08 8.06 -52.48 -0.42 -0.50 16 41 H 0.18 0.79 8.06 -52.48 -0.42 0.37 16 LS Contribution 375.79 15.07 5.66 5.66 Total: -1.00 -38.03 375.79 -7.17 -45.20 By element: Atomic # 1 Polarization: -0.10 SS G_CDS: -4.77 Total: -4.86 kcal Atomic # 6 Polarization: 9.44 SS G_CDS: -1.57 Total: 7.86 kcal Atomic # 7 Polarization: -41.48 SS G_CDS: 0.62 Total: -40.85 kcal Atomic # 8 Polarization: -27.05 SS G_CDS: -2.09 Total: -29.14 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -38.03 -7.17 -45.20 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051719227.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.631 kcal (2) G-P(sol) polarization free energy of solvation -38.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.196 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds