Wall clock time and date at job start Sat Apr 11 2020 05:55:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46499 * 109.47055 * 2 1 4 4 C 1.46500 * 120.00123 * 270.00331 * 3 2 1 5 5 C 1.50702 * 109.46904 * 269.99929 * 4 3 2 6 6 H 1.07993 * 120.00490 * 0.02562 * 5 4 3 7 7 C 1.37881 * 119.99735 * 180.02562 * 5 4 3 8 8 N 1.31512 * 120.00050 * 359.97438 * 7 5 4 9 9 Si 1.86794 * 119.99825 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47634 * 59.99423 * 9 7 5 11 11 H 1.48503 * 109.47157 * 179.97438 * 9 7 5 12 12 H 1.48498 * 109.47225 * 299.99175 * 9 7 5 13 13 C 1.34779 * 119.99707 * 90.00663 * 3 2 1 14 14 O 1.21282 * 119.99922 * 180.02562 * 13 3 2 15 15 C 1.50699 * 120.00037 * 359.97438 * 13 3 2 16 16 O 1.45206 * 109.47021 * 180.02562 * 15 13 3 17 17 C 1.34224 * 117.00077 * 180.02562 * 16 15 13 18 18 O 1.20833 * 120.00103 * 359.97438 * 17 16 15 19 19 C 1.50696 * 120.00302 * 180.02562 * 17 16 15 20 20 N 1.46506 * 109.47418 * 180.02562 * 19 17 16 21 21 C 1.34939 * 126.03980 * 124.71238 * 20 19 17 22 22 C 1.35312 * 107.74733 * 179.83888 * 21 20 19 23 23 C 1.39868 * 107.91791 * 0.42082 * 22 21 20 24 24 N 1.48026 * 125.89896 * 179.75500 * 23 22 21 25 25 O 1.21805 * 120.00092 * 180.02562 * 24 23 22 26 26 O 1.21802 * 120.00035 * 0.02562 * 24 23 22 27 27 N 1.30837 * 108.20351 * 359.74260 * 23 22 21 28 28 H 1.09001 * 109.47495 * 59.99636 * 1 2 3 29 29 H 1.08998 * 109.46821 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.46447 * 299.99424 * 1 2 3 31 31 H 1.09002 * 109.47160 * 240.00485 * 2 1 3 32 32 H 1.09001 * 109.47495 * 120.00364 * 2 1 3 33 33 H 1.08991 * 109.47410 * 30.00046 * 4 3 2 34 34 H 1.09007 * 109.47039 * 150.00320 * 4 3 2 35 35 H 0.97004 * 119.99848 * 180.02562 * 8 7 5 36 36 H 1.09000 * 109.47247 * 60.00371 * 15 13 3 37 37 H 1.09001 * 109.47358 * 299.99798 * 15 13 3 38 38 H 1.09009 * 109.46972 * 299.99362 * 19 17 16 39 39 H 1.08995 * 109.47473 * 59.99636 * 19 17 16 40 40 H 1.08003 * 126.12656 * 359.97438 * 21 20 19 41 41 H 1.08003 * 126.04100 * 180.16416 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2624 2.0719 -1.2687 5 6 3.6857 1.8351 -1.7038 6 1 4.3426 1.2303 -1.0963 7 6 4.1492 2.3906 -2.8775 8 7 3.3492 3.1267 -3.6175 9 14 5.9132 2.0966 -3.4171 10 1 6.1401 0.6399 -3.5955 11 1 6.1607 2.7968 -4.7031 12 1 6.8411 2.6189 -2.3821 13 6 2.2430 2.0165 1.1673 14 8 2.6468 3.1601 1.1673 15 6 1.9914 1.3062 2.4723 16 8 2.3056 2.1959 3.5760 17 6 2.1347 1.7121 4.8163 18 8 1.7354 0.5827 4.9747 19 6 2.4398 2.5779 6.0115 20 7 2.1747 1.8252 7.2402 21 6 3.0502 1.6108 8.2443 22 6 2.4200 0.8786 9.1917 23 6 1.1176 0.6290 8.7470 24 7 0.0850 -0.1430 9.4744 25 8 -1.0196 -0.2952 8.9842 26 8 0.3400 -0.6260 10.5630 27 7 0.9694 1.1959 7.5772 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3632 0.5138 0.8901 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 1.5816 1.6879 -2.0283 34 1 2.0955 3.1412 -1.1383 35 1 3.6753 3.5172 -4.4435 36 1 2.6213 0.4185 2.5302 37 1 0.9433 1.0124 2.5300 38 1 3.4884 2.8748 5.9869 39 1 1.8097 3.4669 5.9865 40 1 4.0705 1.9627 8.2856 41 1 2.8483 0.5424 10.1244 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000051719227.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:41 Heat of formation + Delta-G solvation = -42.106715 kcal Electronic energy + Delta-G solvation = -28591.497194 eV Core-core repulsion = 24091.502519 eV Total energy + Delta-G solvation = -4499.994675 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.131 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.59084 -42.68393 -41.79114 -40.60341 -37.86046 -37.85214 -37.02505 -35.14622 -34.94829 -31.99256 -31.78692 -31.05525 -30.07456 -28.50864 -27.30009 -24.94625 -24.25038 -23.29984 -22.88433 -22.07250 -20.36347 -20.01124 -19.67711 -19.28870 -18.89070 -18.70365 -18.46739 -18.08117 -17.60207 -17.55059 -16.89973 -16.36549 -16.26816 -15.62258 -15.21184 -14.86353 -14.85836 -14.75566 -14.57415 -14.12532 -13.86549 -13.68266 -13.53968 -13.30932 -13.10863 -12.95751 -12.72762 -12.68900 -12.54197 -12.47012 -12.41438 -12.27304 -12.11339 -12.07919 -11.87588 -11.75799 -11.26651 -10.78225 -10.65239 -10.30273 -9.58279 -8.24117 -6.38836 -1.19573 -0.40090 0.32408 0.82669 0.88675 1.21524 1.37084 1.40234 1.41217 1.48513 1.57428 2.23715 2.40559 3.03018 3.06095 3.28212 3.36487 3.54454 3.83911 3.87532 3.94314 4.01189 4.05607 4.09440 4.25663 4.32754 4.53266 4.68864 4.82562 4.89790 4.98938 5.05919 5.07332 5.18035 5.30980 5.39790 5.51125 5.61440 5.76568 6.02161 6.33037 6.39241 6.57517 6.69942 7.17304 7.34265 8.83106 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.021538 B = 0.002040 C = 0.001936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1299.690369 B =13724.482936 C =14458.877350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.095 3.905 3 N -0.595 5.595 4 C 0.263 3.737 5 C -0.545 4.545 6 H 0.056 0.944 7 C 0.008 3.992 8 N -0.927 5.927 9 Si 0.968 3.032 10 H -0.262 1.262 11 H -0.280 1.280 12 H -0.275 1.275 13 C 0.501 3.499 14 O -0.573 6.573 15 C 0.065 3.935 16 O -0.337 6.337 17 C 0.446 3.554 18 O -0.518 6.518 19 C 0.142 3.858 20 N -0.325 5.325 21 C 0.110 3.890 22 C -0.218 4.218 23 C 0.097 3.903 24 N 0.055 4.945 25 O -0.195 6.195 26 O -0.105 6.105 27 N -0.244 5.244 28 H 0.045 0.955 29 H 0.095 0.905 30 H 0.055 0.945 31 H 0.082 0.918 32 H 0.097 0.903 33 H 0.027 0.973 34 H 0.001 0.999 35 H 0.268 0.732 36 H 0.118 0.882 37 H 0.116 0.884 38 H 0.215 0.785 39 H 0.168 0.832 40 H 0.266 0.734 41 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.757 -4.044 24.631 25.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.027 4.027 3 N -0.327 5.327 4 C 0.142 3.858 5 C -0.583 4.583 6 H 0.074 0.926 7 C -0.192 4.192 8 N -0.567 5.567 9 Si 0.792 3.208 10 H -0.186 1.186 11 H -0.205 1.205 12 H -0.200 1.200 13 C 0.288 3.712 14 O -0.453 6.453 15 C -0.011 4.011 16 O -0.251 6.251 17 C 0.288 3.712 18 O -0.406 6.406 19 C 0.022 3.978 20 N -0.115 5.115 21 C -0.034 4.034 22 C -0.248 4.248 23 C -0.146 4.146 24 N 0.578 4.422 25 O -0.399 6.399 26 O -0.331 6.331 27 N -0.077 5.077 28 H 0.064 0.936 29 H 0.114 0.886 30 H 0.074 0.926 31 H 0.100 0.900 32 H 0.115 0.885 33 H 0.045 0.955 34 H 0.020 0.980 35 H 0.076 0.924 36 H 0.136 0.864 37 H 0.134 0.866 38 H 0.231 0.769 39 H 0.185 0.815 40 H 0.282 0.718 41 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges 1.438 -3.079 22.996 23.246 hybrid contribution 0.421 -0.546 -0.206 0.719 sum 1.858 -3.624 22.790 23.151 Atomic orbital electron populations 1.22180 0.94537 1.03691 1.01823 1.21839 0.95369 0.81125 1.04371 1.48209 1.63514 1.15171 1.05835 1.18797 0.95627 0.91705 0.79664 1.21655 0.97724 1.32238 1.06707 0.92581 1.25864 1.02433 0.94448 0.96418 1.70041 1.37825 1.34009 1.14784 0.85459 0.78990 0.78938 0.77381 1.18613 1.20538 1.20039 1.20458 0.78426 0.86671 0.85683 1.90683 1.47066 1.19850 1.87689 1.22807 1.04516 0.91987 0.81832 1.86513 1.78758 1.45292 1.14575 1.24265 0.74511 0.87273 0.85172 1.90795 1.42119 1.21130 1.86548 1.21902 1.10984 0.91373 0.73501 1.48517 1.07137 1.39236 1.16568 1.23882 0.98933 0.95932 0.84631 1.21791 0.89508 1.07467 1.06034 1.22930 0.91543 1.04558 0.95615 1.42533 1.00740 0.98798 1.00176 1.94645 1.08797 1.65332 1.71138 1.94518 1.85712 1.47301 1.05600 1.77444 1.06766 1.11443 1.12008 0.93563 0.88629 0.92571 0.89958 0.88507 0.95457 0.98042 0.92357 0.86389 0.86630 0.76851 0.81515 0.71817 0.77966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.99 10.24 71.98 0.74 -3.25 16 2 C 0.09 2.75 5.93 86.38 0.51 3.26 16 3 N -0.60 -23.98 2.46 -826.15 -2.03 -26.01 16 4 C 0.26 13.64 5.16 85.63 0.44 14.08 16 5 C -0.54 -30.23 9.39 25.60 0.24 -29.99 16 6 H 0.06 3.05 7.81 -2.91 -0.02 3.02 16 7 C 0.01 0.43 5.46 84.66 0.46 0.89 16 8 N -0.93 -54.68 13.29 21.45 0.28 -54.39 16 9 Si 0.97 43.35 29.54 68.60 2.03 45.38 16 10 H -0.26 -11.01 7.11 99.48 0.71 -10.30 16 11 H -0.28 -12.21 7.11 99.48 0.71 -11.51 16 12 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 13 C 0.50 19.80 7.75 87.66 0.68 20.48 16 14 O -0.57 -28.35 16.08 15.76 0.25 -28.09 16 15 C 0.07 1.81 4.50 71.24 0.32 2.13 16 16 O -0.34 -8.56 9.75 -45.00 -0.44 -9.00 16 17 C 0.45 8.77 7.99 71.23 0.57 9.34 16 18 O -0.52 -13.95 15.45 21.94 0.34 -13.62 16 19 C 0.14 1.05 7.10 85.63 0.61 1.66 16 20 N -0.32 -3.93 3.40 -351.79 -1.20 -5.13 16 21 C 0.11 0.49 11.45 83.54 0.96 1.44 16 22 C -0.22 -2.32 10.52 21.99 0.23 -2.09 16 23 C 0.10 2.08 8.15 130.33 1.06 3.14 16 24 N 0.06 1.44 4.45 -49.44 -0.22 1.22 16 25 O -0.19 -6.01 19.23 18.88 0.36 -5.65 16 26 O -0.10 -2.45 19.04 18.88 0.36 -2.09 16 27 N -0.24 -5.65 11.61 -49.46 -0.57 -6.22 16 28 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 29 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 30 H 0.06 1.30 7.22 -2.38 -0.02 1.28 16 31 H 0.08 2.50 8.07 -2.39 -0.02 2.48 16 32 H 0.10 2.17 6.44 -2.39 -0.02 2.15 16 33 H 0.03 1.44 8.07 -2.39 -0.02 1.43 16 34 H 0.00 0.09 7.42 -2.38 -0.02 0.07 16 35 H 0.27 14.84 8.31 -92.71 -0.77 14.07 16 36 H 0.12 2.80 7.39 -2.39 -0.02 2.78 16 37 H 0.12 2.81 7.18 -2.39 -0.02 2.79 16 38 H 0.21 -0.82 8.07 -2.38 -0.02 -0.84 16 39 H 0.17 0.60 8.14 -2.39 -0.02 0.58 16 40 H 0.27 -2.30 8.06 -2.91 -0.02 -2.33 16 41 H 0.20 0.99 8.06 -2.91 -0.02 0.97 16 Total: -1.00 -91.41 375.79 7.07 -84.34 By element: Atomic # 1 Polarization: -2.92 SS G_CDS: 1.08 Total: -1.84 kcal Atomic # 6 Polarization: 14.28 SS G_CDS: 6.82 Total: 21.10 kcal Atomic # 7 Polarization: -86.80 SS G_CDS: -3.73 Total: -90.53 kcal Atomic # 8 Polarization: -59.32 SS G_CDS: 0.88 Total: -58.45 kcal Atomic # 14 Polarization: 43.35 SS G_CDS: 2.03 Total: 45.38 kcal Total: -91.41 7.07 -84.34 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051719227.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.231 kcal (2) G-P(sol) polarization free energy of solvation -91.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.338 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds