Wall clock time and date at job start Sat Apr 11 2020 05:55:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46908 * 110.99778 * 2 1 4 4 C 1.53005 * 109.46736 * 293.94853 * 3 2 1 5 5 C 1.52999 * 109.46817 * 180.02562 * 4 3 2 6 6 S 1.81005 * 109.46669 * 180.02562 * 5 4 3 7 7 C 1.76203 * 99.99762 * 180.02562 * 6 5 4 8 8 H 1.08005 * 119.99970 * 359.97438 * 7 6 5 9 9 C 1.38795 * 120.00328 * 179.97438 * 7 6 5 10 10 N 1.31637 * 119.99510 * 0.02562 * 9 7 6 11 11 Si 1.86795 * 120.00287 * 179.97438 * 9 7 6 12 12 H 1.48502 * 109.47221 * 60.00133 * 11 9 7 13 13 H 1.48507 * 109.47062 * 179.97438 * 11 9 7 14 14 H 1.48493 * 109.47196 * 300.00046 * 11 9 7 15 15 C 1.46900 * 110.99865 * 123.94914 * 2 1 3 16 16 H 1.09000 * 110.53758 * 184.89322 * 15 2 1 17 17 C 1.54625 * 110.48841 * 62.27537 * 15 2 1 18 18 C 1.54474 * 101.76763 * 266.11783 * 17 15 2 19 19 N 1.46761 * 105.47258 * 334.58255 * 18 17 15 20 20 C 1.46498 * 124.35036 * 196.99274 * 19 18 17 21 21 C 1.53006 * 109.47250 * 269.99930 * 20 19 18 22 22 F 1.39903 * 109.46761 * 60.00042 * 21 20 19 23 23 F 1.39904 * 109.47084 * 179.97438 * 21 20 19 24 24 F 1.39896 * 109.47191 * 300.00223 * 21 20 19 25 25 C 1.34417 * 111.30293 * 17.01799 * 19 18 17 26 26 O 1.21278 * 124.94576 * 179.55979 * 25 19 18 27 27 H 1.09004 * 109.47308 * 296.04744 * 1 2 3 28 28 H 1.09004 * 109.47417 * 56.05064 * 1 2 3 29 29 H 1.09002 * 109.47300 * 176.05259 * 1 2 3 30 30 H 1.08993 * 109.47244 * 53.94806 * 3 2 1 31 31 H 1.09002 * 109.46980 * 173.95431 * 3 2 1 32 32 H 1.08994 * 109.47357 * 300.00743 * 4 3 2 33 33 H 1.09002 * 109.46914 * 60.00537 * 4 3 2 34 34 H 1.09003 * 109.47011 * 299.99975 * 5 4 3 35 35 H 1.08993 * 109.47180 * 60.00709 * 5 4 3 36 36 H 0.96995 * 119.99469 * 180.02562 * 10 9 7 37 37 H 1.09001 * 110.96806 * 24.23909 * 17 15 2 38 38 H 1.09007 * 110.96934 * 147.99891 * 17 15 2 39 39 H 1.08998 * 110.24827 * 215.58069 * 18 17 15 40 40 H 1.09002 * 110.24269 * 93.58144 * 18 17 15 41 41 H 1.09003 * 109.47361 * 29.99954 * 20 19 18 42 42 H 1.08996 * 109.47479 * 150.00120 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6314 2.0574 -1.3184 5 6 2.1802 3.4856 -1.3187 6 16 1.7490 4.2972 -2.8780 7 6 2.4830 5.8771 -2.6138 8 1 3.0026 6.0834 -1.6897 9 6 2.3936 6.8565 -3.5932 10 7 1.7599 6.6052 -4.7193 11 14 3.1712 8.5316 -3.3128 12 1 4.6319 8.3699 -3.0996 13 1 2.9370 9.3912 -4.5009 14 1 2.5634 9.1653 -2.1152 15 6 1.9954 -0.7659 1.1377 16 1 3.0819 -0.6895 1.1801 17 6 1.5602 -2.2465 1.0411 18 6 0.2746 -2.2535 1.8975 19 7 0.4239 -1.1359 2.8369 20 6 -0.3676 -0.9718 4.0588 21 6 -1.6275 -0.1622 3.7455 22 9 -2.3881 -0.8366 2.7842 23 9 -2.3836 -0.0060 4.9122 24 9 -1.2631 1.0956 3.2534 25 6 1.3797 -0.2820 2.4321 26 8 1.7013 0.7296 3.0187 27 1 -0.3634 0.4513 0.9233 28 1 -0.3634 0.5739 -0.8525 29 1 -0.3634 -1.0252 -0.0707 30 1 1.5610 1.9274 0.8308 31 1 3.0797 1.3445 0.1082 32 1 2.0657 1.5014 -2.1492 33 1 0.5471 2.0844 -1.4266 34 1 1.7461 4.0418 -0.4878 35 1 3.2644 3.4582 -1.2107 36 1 1.6977 7.2895 -5.4038 37 1 1.3431 -2.5227 0.0092 38 1 2.3172 -2.9042 1.4684 39 1 0.1886 -3.1943 2.4410 40 1 -0.6003 -2.1008 1.2655 41 1 -0.6515 -1.9519 4.4422 42 1 0.2249 -0.4464 4.8077 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000074990811.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:54 Heat of formation + Delta-G solvation = -181.327056 kcal Electronic energy + Delta-G solvation = -28335.926373 eV Core-core repulsion = 23834.331125 eV Total energy + Delta-G solvation = -4501.595248 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.117 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -50.42253 -47.97875 -47.87021 -41.40580 -37.44489 -36.78002 -33.83034 -32.38891 -31.76193 -28.95888 -28.25771 -26.68516 -25.51438 -24.23261 -23.63395 -21.77686 -20.77862 -19.93689 -18.90978 -18.79511 -18.20903 -17.53042 -17.18737 -16.73936 -16.19802 -15.26876 -15.01013 -14.83518 -14.75961 -14.75305 -14.54822 -14.32049 -14.22362 -14.08678 -14.04958 -13.99374 -13.67609 -13.19658 -13.17573 -12.94893 -12.82758 -12.68589 -12.33146 -12.00305 -11.71430 -11.55903 -11.30607 -11.25122 -11.00550 -10.76009 -10.62478 -10.54513 -10.23905 -9.52456 -9.43006 -9.00393 -8.50220 -8.25527 -6.47432 -6.18101 -3.87855 1.89880 2.13425 2.50018 3.25147 3.27262 3.31193 3.38700 3.48395 3.53137 3.75361 3.84690 3.96337 4.05631 4.27530 4.42236 4.48143 4.55417 4.65981 4.90481 5.02409 5.14348 5.17793 5.26536 5.38012 5.41824 5.49612 5.54804 5.65813 5.71051 5.80219 5.85284 5.97367 6.12797 6.37948 6.41145 6.60847 6.73005 6.82584 6.91651 7.63416 7.65407 8.41630 9.28205 10.90127 Molecular weight = 340.12amu Principal moments of inertia in cm(-1) A = 0.017191 B = 0.002454 C = 0.002316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1628.343804 B =11405.909884 C =12087.734114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.005 3.995 2 N -0.506 5.506 3 C 0.053 3.947 4 C -0.092 4.092 5 C -0.112 4.112 6 S -0.132 6.132 7 C -0.516 4.516 8 H 0.072 0.928 9 C 0.071 3.929 10 N -0.871 5.871 11 Si 0.918 3.082 12 H -0.274 1.274 13 H -0.283 1.283 14 H -0.274 1.274 15 C 0.056 3.944 16 H 0.121 0.879 17 C -0.125 4.125 18 C 0.094 3.906 19 N -0.622 5.622 20 C 0.087 3.913 21 C 0.430 3.570 22 F -0.182 7.182 23 F -0.182 7.182 24 F -0.172 7.172 25 C 0.492 3.508 26 O -0.503 6.503 27 H 0.027 0.973 28 H 0.084 0.916 29 H 0.073 0.927 30 H 0.044 0.956 31 H 0.078 0.922 32 H 0.075 0.925 33 H 0.064 0.936 34 H 0.058 0.942 35 H 0.061 0.939 36 H 0.267 0.733 37 H 0.107 0.893 38 H 0.091 0.909 39 H 0.085 0.915 40 H 0.082 0.918 41 H 0.125 0.875 42 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.798 -24.586 17.647 30.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 N -0.230 5.230 3 C -0.076 4.076 4 C -0.130 4.130 5 C -0.262 4.262 6 S 0.096 5.904 7 C -0.664 4.664 8 H 0.090 0.910 9 C -0.138 4.138 10 N -0.507 5.507 11 Si 0.744 3.256 12 H -0.199 1.199 13 H -0.208 1.208 14 H -0.200 1.200 15 C -0.057 4.057 16 H 0.139 0.861 17 C -0.163 4.163 18 C -0.028 4.028 19 N -0.358 5.358 20 C -0.038 4.038 21 C 0.374 3.626 22 F -0.164 7.164 23 F -0.163 7.163 24 F -0.154 7.154 25 C 0.278 3.722 26 O -0.375 6.375 27 H 0.046 0.954 28 H 0.102 0.898 29 H 0.092 0.908 30 H 0.063 0.937 31 H 0.096 0.904 32 H 0.093 0.907 33 H 0.083 0.917 34 H 0.077 0.923 35 H 0.080 0.920 36 H 0.077 0.923 37 H 0.126 0.874 38 H 0.110 0.890 39 H 0.103 0.897 40 H 0.100 0.900 41 H 0.143 0.857 42 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -5.137 -24.528 16.484 29.995 hybrid contribution 0.444 2.125 2.034 2.975 sum -4.693 -22.403 18.518 29.442 Atomic orbital electron populations 1.22763 0.87154 1.02491 1.01835 1.62436 1.08383 1.15530 1.36679 1.22342 1.00364 0.86329 0.98519 1.21272 1.01240 0.94236 0.96283 1.23225 1.02356 0.97411 1.03180 1.84571 1.74382 1.13329 1.18078 1.22664 1.40415 0.97598 1.05714 0.91018 1.25008 0.95247 0.98989 0.94539 1.70018 1.40068 1.34436 1.06128 0.86228 0.79603 0.81928 0.77808 1.19929 1.20835 1.19952 1.22679 1.01738 0.94912 0.86350 0.86145 1.22711 0.96417 0.94883 1.02241 1.22468 0.99850 0.88972 0.91535 1.48258 1.37233 1.27063 1.23215 1.22467 0.89440 1.02556 0.89370 1.21343 0.86706 0.79899 0.74646 1.93187 1.78390 1.79886 1.64910 1.93199 1.78490 1.95878 1.48771 1.93271 1.91378 1.42814 1.87899 1.22315 0.79539 0.82946 0.87423 1.90780 1.63209 1.23933 1.59580 0.95446 0.89780 0.90808 0.93730 0.90403 0.90650 0.91694 0.92308 0.92041 0.92304 0.87413 0.89048 0.89703 0.89975 0.85686 0.85602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.06 8.09 60.06 0.49 0.54 16 2 N -0.51 -5.83 4.74 -234.89 -1.11 -6.95 16 3 C 0.05 0.77 4.59 -3.82 -0.02 0.75 16 4 C -0.09 -1.56 5.15 -26.73 -0.14 -1.70 16 5 C -0.11 -2.39 5.67 37.16 0.21 -2.17 16 6 S -0.13 -3.55 21.44 -107.50 -2.30 -5.85 16 7 C -0.52 -15.22 9.50 30.94 0.29 -14.93 16 8 H 0.07 2.06 7.80 -52.48 -0.41 1.65 16 9 C 0.07 2.07 5.49 -17.43 -0.10 1.97 16 10 N -0.87 -26.51 13.22 55.49 0.73 -25.78 16 11 Si 0.92 22.08 29.55 -169.99 -5.02 17.05 16 12 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 13 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 14 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 15 C 0.06 0.51 3.15 -67.72 -0.21 0.30 16 16 H 0.12 1.07 8.00 -51.93 -0.42 0.65 16 17 C -0.12 -0.64 6.26 -25.10 -0.16 -0.80 16 18 C 0.09 0.45 6.34 -3.13 -0.02 0.43 16 19 N -0.62 -4.80 2.57 -172.42 -0.44 -5.24 16 20 C 0.09 0.55 5.91 -4.04 -0.02 0.53 16 21 C 0.43 3.92 3.29 37.16 0.12 4.05 16 22 F -0.18 -1.67 17.09 2.25 0.04 -1.63 16 23 F -0.18 -1.66 17.32 2.25 0.04 -1.62 16 24 F -0.17 -2.24 16.58 2.25 0.04 -2.20 16 25 C 0.49 5.45 5.28 -10.86 -0.06 5.39 16 26 O -0.50 -7.70 16.75 5.56 0.09 -7.61 16 27 H 0.03 0.35 6.44 -51.93 -0.33 0.01 16 28 H 0.08 1.02 6.30 -51.93 -0.33 0.69 16 29 H 0.07 0.62 5.20 -51.93 -0.27 0.35 16 30 H 0.04 0.74 7.19 -51.93 -0.37 0.36 16 31 H 0.08 1.10 7.98 -51.93 -0.41 0.68 16 32 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 33 H 0.06 1.12 6.47 -51.93 -0.34 0.78 16 34 H 0.06 1.27 8.14 -51.91 -0.42 0.85 16 35 H 0.06 1.29 8.14 -51.92 -0.42 0.86 16 36 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 37 H 0.11 0.52 7.92 -51.93 -0.41 0.11 16 38 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16 39 H 0.08 0.19 8.14 -51.93 -0.42 -0.23 16 40 H 0.08 0.42 6.15 -51.93 -0.32 0.11 16 41 H 0.13 0.32 8.14 -51.93 -0.42 -0.10 16 42 H 0.13 0.82 7.93 -51.93 -0.41 0.41 16 LS Contribution 363.86 15.07 5.48 5.48 Total: -1.00 -35.38 363.86 -7.76 -43.15 By element: Atomic # 1 Polarization: 2.52 SS G_CDS: -5.69 Total: -3.18 kcal Atomic # 6 Polarization: -6.01 SS G_CDS: 0.39 Total: -5.62 kcal Atomic # 7 Polarization: -37.15 SS G_CDS: -0.82 Total: -37.97 kcal Atomic # 8 Polarization: -7.70 SS G_CDS: 0.09 Total: -7.61 kcal Atomic # 9 Polarization: -5.57 SS G_CDS: 0.11 Total: -5.46 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.05 kcal Atomic # 16 Polarization: -3.55 SS G_CDS: -2.30 Total: -5.85 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -35.38 -7.76 -43.15 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074990811.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -138.180 kcal (2) G-P(sol) polarization free energy of solvation -35.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -173.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.147 kcal (6) G-S(sol) free energy of system = (1) + (5) -181.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds