Wall clock time and date at job start Sat Apr 11 2020 05:55:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46908 * 110.99778 * 2 1 4 4 C 1.53005 * 109.46736 * 293.94853 * 3 2 1 5 5 C 1.52999 * 109.46817 * 180.02562 * 4 3 2 6 6 S 1.81005 * 109.46669 * 180.02562 * 5 4 3 7 7 C 1.76203 * 99.99762 * 180.02562 * 6 5 4 8 8 H 1.08005 * 119.99970 * 359.97438 * 7 6 5 9 9 C 1.38795 * 120.00328 * 179.97438 * 7 6 5 10 10 N 1.31637 * 119.99510 * 0.02562 * 9 7 6 11 11 Si 1.86795 * 120.00287 * 179.97438 * 9 7 6 12 12 H 1.48502 * 109.47221 * 60.00133 * 11 9 7 13 13 H 1.48507 * 109.47062 * 179.97438 * 11 9 7 14 14 H 1.48493 * 109.47196 * 300.00046 * 11 9 7 15 15 C 1.46900 * 110.99865 * 123.94914 * 2 1 3 16 16 H 1.09000 * 110.53758 * 184.89322 * 15 2 1 17 17 C 1.54625 * 110.48841 * 62.27537 * 15 2 1 18 18 C 1.54474 * 101.76763 * 266.11783 * 17 15 2 19 19 N 1.46761 * 105.47258 * 334.58255 * 18 17 15 20 20 C 1.46498 * 124.35036 * 196.99274 * 19 18 17 21 21 C 1.53006 * 109.47250 * 269.99930 * 20 19 18 22 22 F 1.39903 * 109.46761 * 60.00042 * 21 20 19 23 23 F 1.39904 * 109.47084 * 179.97438 * 21 20 19 24 24 F 1.39896 * 109.47191 * 300.00223 * 21 20 19 25 25 C 1.34417 * 111.30293 * 17.01799 * 19 18 17 26 26 O 1.21278 * 124.94576 * 179.55979 * 25 19 18 27 27 H 1.09004 * 109.47308 * 296.04744 * 1 2 3 28 28 H 1.09004 * 109.47417 * 56.05064 * 1 2 3 29 29 H 1.09002 * 109.47300 * 176.05259 * 1 2 3 30 30 H 1.08993 * 109.47244 * 53.94806 * 3 2 1 31 31 H 1.09002 * 109.46980 * 173.95431 * 3 2 1 32 32 H 1.08994 * 109.47357 * 300.00743 * 4 3 2 33 33 H 1.09002 * 109.46914 * 60.00537 * 4 3 2 34 34 H 1.09003 * 109.47011 * 299.99975 * 5 4 3 35 35 H 1.08993 * 109.47180 * 60.00709 * 5 4 3 36 36 H 0.96995 * 119.99469 * 180.02562 * 10 9 7 37 37 H 1.09001 * 110.96806 * 24.23909 * 17 15 2 38 38 H 1.09007 * 110.96934 * 147.99891 * 17 15 2 39 39 H 1.08998 * 110.24827 * 215.58069 * 18 17 15 40 40 H 1.09002 * 110.24269 * 93.58144 * 18 17 15 41 41 H 1.09003 * 109.47361 * 29.99954 * 20 19 18 42 42 H 1.08996 * 109.47479 * 150.00120 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6314 2.0574 -1.3184 5 6 2.1802 3.4856 -1.3187 6 16 1.7490 4.2972 -2.8780 7 6 2.4830 5.8771 -2.6138 8 1 3.0026 6.0834 -1.6897 9 6 2.3936 6.8565 -3.5932 10 7 1.7599 6.6052 -4.7193 11 14 3.1712 8.5316 -3.3128 12 1 4.6319 8.3699 -3.0996 13 1 2.9370 9.3912 -4.5009 14 1 2.5634 9.1653 -2.1152 15 6 1.9954 -0.7659 1.1377 16 1 3.0819 -0.6895 1.1801 17 6 1.5602 -2.2465 1.0411 18 6 0.2746 -2.2535 1.8975 19 7 0.4239 -1.1359 2.8369 20 6 -0.3676 -0.9718 4.0588 21 6 -1.6275 -0.1622 3.7455 22 9 -2.3881 -0.8366 2.7842 23 9 -2.3836 -0.0060 4.9122 24 9 -1.2631 1.0956 3.2534 25 6 1.3797 -0.2820 2.4321 26 8 1.7013 0.7296 3.0187 27 1 -0.3634 0.4513 0.9233 28 1 -0.3634 0.5739 -0.8525 29 1 -0.3634 -1.0252 -0.0707 30 1 1.5610 1.9274 0.8308 31 1 3.0797 1.3445 0.1082 32 1 2.0657 1.5014 -2.1492 33 1 0.5471 2.0844 -1.4266 34 1 1.7461 4.0418 -0.4878 35 1 3.2644 3.4582 -1.2107 36 1 1.6977 7.2895 -5.4038 37 1 1.3431 -2.5227 0.0092 38 1 2.3172 -2.9042 1.4684 39 1 0.1886 -3.1943 2.4410 40 1 -0.6003 -2.1008 1.2655 41 1 -0.6515 -1.9519 4.4422 42 1 0.2249 -0.4464 4.8077 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000074990811.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:54 Heat of formation + Delta-G solvation = -205.566374 kcal Electronic energy + Delta-G solvation = -28336.977469 eV Core-core repulsion = 23834.331125 eV Total energy + Delta-G solvation = -4502.646344 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.117 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -51.18155 -48.72356 -48.68126 -42.13248 -38.41882 -37.58594 -34.85432 -34.60359 -32.76584 -29.59591 -28.99014 -28.08130 -27.48330 -25.15558 -24.49621 -22.41026 -22.09841 -20.69622 -19.67312 -19.56920 -19.54451 -18.90794 -18.04085 -17.46098 -17.06607 -16.91385 -16.48773 -16.19927 -15.68877 -15.62141 -15.51732 -15.28372 -15.11135 -15.05004 -14.86331 -14.85402 -14.79483 -14.47634 -14.12961 -13.74022 -13.67082 -13.56173 -13.38845 -13.30201 -13.09262 -12.93243 -12.70844 -12.59694 -12.42850 -12.14897 -12.01507 -11.68725 -11.44655 -11.34020 -11.15344 -10.36719 -10.07173 -9.47777 -8.68750 -8.39239 -6.15699 1.12536 1.29337 1.39131 1.45430 1.53966 1.70548 1.82613 2.26098 2.71250 2.76917 2.90580 2.94613 3.15137 3.27434 3.32973 3.49055 3.86599 3.94821 4.00572 4.09954 4.12992 4.18250 4.22248 4.33299 4.44545 4.48412 4.53592 4.68558 4.70441 4.78800 4.91313 5.10837 5.11825 5.17297 5.22153 5.27745 5.37292 5.73193 5.81090 5.89201 6.15986 6.87074 7.02625 8.70112 Molecular weight = 340.12amu Principal moments of inertia in cm(-1) A = 0.017191 B = 0.002454 C = 0.002316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1628.343804 B =11405.909884 C =12087.734114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.008 3.992 2 N -0.502 5.502 3 C 0.067 3.933 4 C -0.078 4.078 5 C -0.090 4.090 6 S -0.187 6.187 7 C -0.543 4.543 8 H 0.069 0.931 9 C 0.017 3.983 10 N -0.906 5.906 11 Si 0.994 3.006 12 H -0.263 1.263 13 H -0.271 1.271 14 H -0.267 1.267 15 C 0.047 3.953 16 H 0.122 0.878 17 C -0.111 4.111 18 C 0.088 3.912 19 N -0.615 5.615 20 C 0.089 3.911 21 C 0.424 3.576 22 F -0.182 7.182 23 F -0.183 7.183 24 F -0.202 7.202 25 C 0.484 3.516 26 O -0.558 6.558 27 H 0.008 0.992 28 H 0.068 0.932 29 H 0.107 0.893 30 H 0.019 0.981 31 H 0.083 0.917 32 H 0.079 0.921 33 H 0.061 0.939 34 H 0.049 0.951 35 H 0.064 0.936 36 H 0.273 0.727 37 H 0.117 0.883 38 H 0.118 0.882 39 H 0.125 0.875 40 H 0.081 0.919 41 H 0.174 0.826 42 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.423 -26.910 18.567 32.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 N -0.225 5.225 3 C -0.063 4.063 4 C -0.117 4.117 5 C -0.239 4.239 6 S 0.041 5.959 7 C -0.691 4.691 8 H 0.088 0.912 9 C -0.188 4.188 10 N -0.542 5.542 11 Si 0.815 3.185 12 H -0.188 1.188 13 H -0.196 1.196 14 H -0.192 1.192 15 C -0.065 4.065 16 H 0.140 0.860 17 C -0.148 4.148 18 C -0.033 4.033 19 N -0.349 5.349 20 C -0.036 4.036 21 C 0.368 3.632 22 F -0.164 7.164 23 F -0.165 7.165 24 F -0.183 7.183 25 C 0.271 3.729 26 O -0.434 6.434 27 H 0.027 0.973 28 H 0.087 0.913 29 H 0.125 0.875 30 H 0.038 0.962 31 H 0.101 0.899 32 H 0.097 0.903 33 H 0.079 0.921 34 H 0.068 0.932 35 H 0.083 0.917 36 H 0.082 0.918 37 H 0.135 0.865 38 H 0.137 0.863 39 H 0.143 0.857 40 H 0.100 0.900 41 H 0.191 0.809 42 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -4.792 -26.913 17.398 32.403 hybrid contribution 0.250 2.742 1.799 3.289 sum -4.541 -24.172 19.197 31.199 Atomic orbital electron populations 1.22780 0.86850 1.04128 1.00160 1.62431 1.08557 1.13365 1.38178 1.22049 1.00578 0.87970 0.95678 1.21137 1.00739 0.91791 0.97998 1.23153 1.02553 0.99058 0.99152 1.84513 1.75023 1.13778 1.22555 1.23017 1.41083 0.98899 1.06085 0.91236 1.26063 0.95471 1.03324 0.93986 1.70143 1.41024 1.36025 1.07035 0.85077 0.78884 0.76340 0.78182 1.18811 1.19605 1.19204 1.22889 1.01849 0.97156 0.84574 0.85978 1.22775 0.97126 0.91732 1.03210 1.22774 0.99566 0.89459 0.91473 1.48351 1.35912 1.26896 1.23742 1.22721 0.87729 1.04384 0.88718 1.21851 0.87802 0.79112 0.74399 1.93180 1.78580 1.79596 1.65006 1.93191 1.78696 1.95862 1.48711 1.93219 1.91673 1.45078 1.88357 1.22633 0.80116 0.82471 0.87700 1.90747 1.65161 1.26259 1.61223 0.97333 0.91287 0.87475 0.96215 0.89887 0.90257 0.92078 0.93215 0.91724 0.91849 0.86467 0.86319 0.85662 0.90048 0.80885 0.85992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.18 8.09 127.69 1.03 1.21 16 2 N -0.50 -11.09 4.74 -897.06 -4.25 -15.33 16 3 C 0.07 1.96 4.59 86.30 0.40 2.36 16 4 C -0.08 -2.69 5.15 30.60 0.16 -2.54 16 5 C -0.09 -3.91 5.67 71.98 0.41 -3.50 16 6 S -0.19 -10.40 21.44 -56.49 -1.21 -11.61 16 7 C -0.54 -32.74 9.50 67.95 0.65 -32.09 16 8 H 0.07 4.07 7.80 -2.91 -0.02 4.05 16 9 C 0.02 0.98 5.49 84.86 0.47 1.44 16 10 N -0.91 -55.93 13.22 21.65 0.29 -55.65 16 11 Si 0.99 45.37 29.55 68.60 2.03 47.40 16 12 H -0.26 -11.51 7.11 99.48 0.71 -10.80 16 13 H -0.27 -11.78 7.11 99.48 0.71 -11.08 16 14 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 15 C 0.05 0.79 3.15 44.91 0.14 0.93 16 16 H 0.12 1.99 8.00 -2.39 -0.02 1.97 16 17 C -0.11 -0.70 6.26 31.65 0.20 -0.50 16 18 C 0.09 0.49 6.34 86.83 0.55 1.04 16 19 N -0.62 -8.09 2.57 -818.00 -2.11 -10.20 16 20 C 0.09 0.95 5.91 86.38 0.51 1.46 16 21 C 0.42 7.39 3.29 71.98 0.24 7.62 16 22 F -0.18 -3.07 17.09 44.97 0.77 -2.30 16 23 F -0.18 -3.20 17.32 44.97 0.78 -2.42 16 24 F -0.20 -5.44 16.58 44.97 0.75 -4.69 16 25 C 0.48 10.37 5.28 87.90 0.46 10.83 16 26 O -0.56 -17.62 16.75 -3.02 -0.05 -17.67 16 27 H 0.01 0.21 6.44 -2.38 -0.02 0.19 16 28 H 0.07 1.68 6.30 -2.38 -0.02 1.66 16 29 H 0.11 1.53 5.20 -2.39 -0.01 1.51 16 30 H 0.02 0.68 7.19 -2.39 -0.02 0.66 16 31 H 0.08 2.34 7.98 -2.39 -0.02 2.32 16 32 H 0.08 2.70 8.14 -2.39 -0.02 2.68 16 33 H 0.06 2.16 6.47 -2.39 -0.02 2.15 16 34 H 0.05 2.23 8.14 -2.39 -0.02 2.21 16 35 H 0.06 2.76 8.14 -2.40 -0.02 2.74 16 36 H 0.27 15.58 8.31 -92.71 -0.77 14.81 16 37 H 0.12 0.61 7.92 -2.39 -0.02 0.59 16 38 H 0.12 0.19 8.14 -2.38 -0.02 0.17 16 39 H 0.13 -0.19 8.14 -2.39 -0.02 -0.21 16 40 H 0.08 0.52 6.15 -2.39 -0.01 0.50 16 41 H 0.17 0.13 8.14 -2.39 -0.02 0.11 16 42 H 0.12 1.45 7.93 -2.39 -0.02 1.43 16 Total: -1.00 -80.88 363.86 3.24 -77.63 By element: Atomic # 1 Polarization: 5.53 SS G_CDS: 1.04 Total: 6.58 kcal Atomic # 6 Polarization: -16.94 SS G_CDS: 5.21 Total: -11.73 kcal Atomic # 7 Polarization: -75.11 SS G_CDS: -6.07 Total: -81.18 kcal Atomic # 8 Polarization: -17.62 SS G_CDS: -0.05 Total: -17.67 kcal Atomic # 9 Polarization: -11.71 SS G_CDS: 2.29 Total: -9.42 kcal Atomic # 14 Polarization: 45.37 SS G_CDS: 2.03 Total: 47.40 kcal Atomic # 16 Polarization: -10.40 SS G_CDS: -1.21 Total: -11.61 kcal Total: -80.88 3.24 -77.63 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074990811.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -127.933 kcal (2) G-P(sol) polarization free energy of solvation -80.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -208.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.633 kcal (6) G-S(sol) free energy of system = (1) + (5) -205.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds