Wall clock time and date at job start Sat Apr 11 2020 05:55:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46888 * 1 3 3 C 1.46899 * 111.00237 * 2 1 4 4 C 1.53006 * 109.46884 * 74.99387 * 3 2 1 5 5 C 1.53005 * 109.47131 * 180.02562 * 4 3 2 6 6 S 1.81000 * 109.47125 * 179.97438 * 5 4 3 7 7 C 1.76199 * 99.99668 * 179.97438 * 6 5 4 8 8 H 1.07993 * 120.00698 * 359.97438 * 7 6 5 9 9 C 1.38806 * 119.99351 * 180.02562 * 7 6 5 10 10 N 1.31621 * 120.00457 * 359.97438 * 9 7 6 11 11 Si 1.86803 * 119.99551 * 179.97438 * 9 7 6 12 12 H 1.48502 * 109.47175 * 89.99715 * 11 9 7 13 13 H 1.48500 * 109.46903 * 209.99971 * 11 9 7 14 14 H 1.48498 * 109.47421 * 329.99860 * 11 9 7 15 15 C 1.46908 * 111.00149 * 236.05011 * 2 1 3 16 16 H 1.08998 * 110.43270 * 309.63532 * 15 2 1 17 17 C 1.54625 * 110.48762 * 72.31729 * 15 2 1 18 18 C 1.54477 * 101.76606 * 143.47670 * 17 15 2 19 19 N 1.46766 * 105.47349 * 334.58695 * 18 17 15 20 20 C 1.46499 * 124.34911 * 197.03406 * 19 18 17 21 21 C 1.52999 * 109.47042 * 269.99945 * 20 19 18 22 22 F 1.39902 * 109.47148 * 60.00457 * 21 20 19 23 23 F 1.39903 * 109.47291 * 180.02562 * 21 20 19 24 24 F 1.39897 * 109.47410 * 300.00218 * 21 20 19 25 25 C 1.34424 * 111.30073 * 17.01560 * 19 18 17 26 26 O 1.21275 * 124.94345 * 179.55826 * 25 19 18 27 27 H 1.09005 * 109.47648 * 54.41202 * 1 2 3 28 28 H 1.08998 * 109.47223 * 174.41581 * 1 2 3 29 29 H 1.09008 * 109.47502 * 294.41349 * 1 2 3 30 30 H 1.09008 * 109.47244 * 314.99505 * 3 2 1 31 31 H 1.08996 * 109.47359 * 194.99446 * 3 2 1 32 32 H 1.09004 * 109.46946 * 299.99930 * 4 3 2 33 33 H 1.08995 * 109.47306 * 60.00170 * 4 3 2 34 34 H 1.08996 * 109.46853 * 299.99901 * 5 4 3 35 35 H 1.08997 * 109.47092 * 59.99177 * 5 4 3 36 36 H 0.96996 * 120.00338 * 180.02562 * 10 9 7 37 37 H 1.08999 * 110.97002 * 261.60223 * 17 15 2 38 38 H 1.09004 * 110.96514 * 25.35742 * 17 15 2 39 39 H 1.08993 * 110.25168 * 215.58529 * 18 17 15 40 40 H 1.08999 * 110.31745 * 93.61956 * 18 17 15 41 41 H 1.08995 * 109.46893 * 30.00065 * 20 19 18 42 42 H 1.09004 * 109.46840 * 150.00390 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.8294 1.9813 1.3934 5 6 2.3772 3.4100 1.3933 6 16 2.1803 4.1318 3.0414 7 6 2.8734 5.7273 2.7613 8 1 3.2544 5.9868 1.7847 9 6 2.9306 6.6504 3.7964 10 7 2.4667 6.3341 4.9868 11 14 3.6661 8.3418 3.4998 12 1 2.5988 9.2751 3.0582 13 1 4.2742 8.8446 4.7577 14 1 4.7099 8.2501 2.4475 15 6 1.9954 -0.7659 -1.1377 16 1 1.5235 -1.7472 -1.1868 17 6 1.7786 0.0086 -2.4583 18 6 3.0636 -0.3391 -3.2420 19 7 4.0704 -0.6562 -2.2222 20 6 5.5138 -0.6952 -2.4698 21 6 5.9201 -2.1074 -2.8959 22 9 5.2368 -2.4562 -4.0658 23 9 7.2986 -2.1449 -3.1317 24 9 5.5967 -3.0125 -1.8794 25 6 3.4980 -0.9058 -1.0319 26 8 4.0987 -1.2007 -0.0204 27 1 -0.3634 0.5981 -0.8357 28 1 -0.3633 -1.0228 -0.1000 29 1 -0.3634 0.4248 0.9358 30 1 1.4472 1.9711 -0.7268 31 1 3.0523 1.3549 -0.2659 32 1 0.7725 1.9979 1.6592 33 1 2.3775 1.3818 2.1201 34 1 3.4341 3.3938 1.1273 35 1 1.8289 4.0093 0.6665 36 1 2.5064 6.9792 5.7100 37 1 0.8930 -0.3523 -2.9813 38 1 1.7116 1.0810 -2.2750 39 1 3.3856 0.5156 -3.8369 40 1 2.8930 -1.2026 -3.8848 41 1 5.7658 0.0099 -3.2618 42 1 6.0462 -0.4235 -1.5582 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000074990812.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:56 Heat of formation + Delta-G solvation = -181.720782 kcal Electronic energy + Delta-G solvation = -27860.632111 eV Core-core repulsion = 23359.019790 eV Total energy + Delta-G solvation = -4501.612321 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.117 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -50.42082 -47.97425 -47.87424 -41.15684 -37.67411 -36.63964 -33.62878 -32.42730 -32.09062 -28.75486 -27.89709 -26.88933 -25.53011 -24.16387 -23.81013 -22.04765 -20.65837 -19.85372 -18.88739 -18.78952 -18.13293 -17.47049 -17.07702 -16.55969 -16.11299 -15.35222 -15.00021 -14.84729 -14.80020 -14.78346 -14.41105 -14.34772 -14.17709 -14.06839 -14.05062 -14.02733 -13.77130 -13.35471 -13.16507 -12.94829 -12.90080 -12.55202 -12.43250 -12.02592 -11.85209 -11.62533 -11.47761 -11.29800 -11.05963 -10.77831 -10.63393 -10.28347 -10.08088 -9.54467 -9.40343 -9.04673 -8.45588 -8.27416 -6.50430 -6.21208 -3.91152 2.03657 2.13128 2.57200 3.21212 3.22491 3.29401 3.40621 3.46402 3.56142 3.73028 3.88085 3.94701 4.19341 4.24252 4.39444 4.50144 4.55230 4.78428 4.97517 4.99635 5.02720 5.14600 5.18306 5.28163 5.34303 5.41379 5.52408 5.54771 5.75135 5.80551 5.82014 5.89441 6.04021 6.33704 6.47817 6.59351 6.72202 6.85262 6.92784 7.61458 7.80614 8.37713 9.24799 10.86985 Molecular weight = 340.12amu Principal moments of inertia in cm(-1) A = 0.014932 B = 0.002424 C = 0.002230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1874.729619 B =11548.356745 C =12551.935466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.518 5.518 3 C 0.059 3.941 4 C -0.091 4.091 5 C -0.112 4.112 6 S -0.130 6.130 7 C -0.516 4.516 8 H 0.071 0.929 9 C 0.071 3.929 10 N -0.869 5.869 11 Si 0.918 3.082 12 H -0.277 1.277 13 H -0.282 1.282 14 H -0.272 1.272 15 C 0.059 3.941 16 H 0.121 0.879 17 C -0.172 4.172 18 C 0.106 3.894 19 N -0.627 5.627 20 C 0.089 3.911 21 C 0.432 3.568 22 F -0.185 7.185 23 F -0.181 7.181 24 F -0.174 7.174 25 C 0.526 3.474 26 O -0.484 6.484 27 H 0.030 0.970 28 H 0.067 0.933 29 H 0.080 0.920 30 H 0.041 0.959 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.076 0.924 34 H 0.058 0.942 35 H 0.057 0.943 36 H 0.267 0.733 37 H 0.095 0.905 38 H 0.093 0.907 39 H 0.084 0.916 40 H 0.078 0.922 41 H 0.126 0.874 42 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.338 -16.786 -21.941 27.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.241 5.241 3 C -0.070 4.070 4 C -0.129 4.129 5 C -0.261 4.261 6 S 0.099 5.901 7 C -0.665 4.665 8 H 0.089 0.911 9 C -0.138 4.138 10 N -0.505 5.505 11 Si 0.744 3.256 12 H -0.203 1.203 13 H -0.207 1.207 14 H -0.197 1.197 15 C -0.053 4.053 16 H 0.139 0.861 17 C -0.212 4.212 18 C -0.017 4.017 19 N -0.364 5.364 20 C -0.036 4.036 21 C 0.376 3.624 22 F -0.166 7.166 23 F -0.162 7.162 24 F -0.156 7.156 25 C 0.312 3.688 26 O -0.353 6.353 27 H 0.049 0.951 28 H 0.086 0.914 29 H 0.099 0.901 30 H 0.059 0.941 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.094 0.906 34 H 0.077 0.923 35 H 0.075 0.925 36 H 0.077 0.923 37 H 0.113 0.887 38 H 0.112 0.888 39 H 0.103 0.897 40 H 0.096 0.904 41 H 0.144 0.856 42 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 0.411 -17.592 -19.774 26.470 hybrid contribution 0.888 1.746 -2.272 2.999 sum 1.298 -15.846 -22.046 27.181 Atomic orbital electron populations 1.22461 0.86020 1.01760 1.02064 1.61908 1.08471 1.14616 1.39145 1.22303 0.99360 0.86833 0.98488 1.21222 1.01901 0.94375 0.95437 1.23220 1.02025 0.97514 1.03348 1.84673 1.81279 1.15343 1.08837 1.22686 1.45978 0.98293 0.99518 0.91053 1.25013 0.95277 0.99002 0.94514 1.70017 1.43756 1.35402 1.01303 0.86176 0.79163 0.82367 0.77871 1.20307 1.20746 1.19721 1.22456 0.92980 1.00114 0.89794 0.86147 1.23396 0.97876 1.03029 0.96850 1.22156 0.87375 1.01607 0.90542 1.48084 1.04587 1.71543 1.12156 1.22472 0.83195 0.91148 1.06833 1.21354 0.74832 0.91029 0.75189 1.93174 1.79764 1.93726 1.49945 1.93203 1.31514 1.97005 1.94526 1.93249 1.92308 1.70453 1.59564 1.20814 0.90132 0.75683 0.82176 1.90786 1.69078 1.44300 1.31178 0.95148 0.91387 0.90115 0.94114 0.91522 0.91509 0.90561 0.92346 0.92452 0.92305 0.88652 0.88836 0.89742 0.90365 0.85605 0.85248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 9.13 60.06 0.55 0.78 16 2 N -0.52 -6.07 4.69 -234.90 -1.10 -7.17 16 3 C 0.06 0.77 3.79 -3.82 -0.01 0.76 16 4 C -0.09 -1.52 5.31 -26.73 -0.14 -1.66 16 5 C -0.11 -2.27 5.67 37.16 0.21 -2.06 16 6 S -0.13 -3.44 21.44 -107.50 -2.30 -5.74 16 7 C -0.52 -14.91 9.50 30.94 0.29 -14.62 16 8 H 0.07 1.99 7.80 -52.49 -0.41 1.58 16 9 C 0.07 2.03 5.49 -17.43 -0.10 1.93 16 10 N -0.87 -26.19 13.22 55.49 0.73 -25.46 16 11 Si 0.92 21.59 29.55 -169.99 -5.02 16.57 16 12 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 13 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 14 H -0.27 -6.26 7.11 56.52 0.40 -5.85 16 15 C 0.06 0.56 3.00 -67.72 -0.20 0.35 16 16 H 0.12 0.98 7.99 -51.93 -0.41 0.56 16 17 C -0.17 -1.05 5.98 -25.10 -0.15 -1.20 16 18 C 0.11 0.58 7.22 -3.12 -0.02 0.56 16 19 N -0.63 -5.36 2.81 -172.42 -0.48 -5.85 16 20 C 0.09 0.64 5.91 -4.04 -0.02 0.62 16 21 C 0.43 3.77 3.29 37.16 0.12 3.89 16 22 F -0.18 -1.56 17.09 2.25 0.04 -1.52 16 23 F -0.18 -1.62 17.32 2.25 0.04 -1.58 16 24 F -0.17 -2.04 16.96 2.25 0.04 -2.00 16 25 C 0.53 6.27 5.85 -10.86 -0.06 6.21 16 26 O -0.48 -7.94 17.59 5.56 0.10 -7.84 16 27 H 0.03 0.24 7.67 -51.93 -0.40 -0.15 16 28 H 0.07 0.52 7.97 -51.93 -0.41 0.11 16 29 H 0.08 0.84 7.06 -51.92 -0.37 0.47 16 30 H 0.04 0.48 6.55 -51.92 -0.34 0.14 16 31 H 0.07 0.93 6.77 -51.93 -0.35 0.58 16 32 H 0.07 1.10 7.01 -51.93 -0.36 0.73 16 33 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 34 H 0.06 1.20 8.14 -51.92 -0.42 0.77 16 35 H 0.06 1.13 8.14 -51.92 -0.42 0.70 16 36 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 37 H 0.09 0.39 8.14 -51.93 -0.42 -0.04 16 38 H 0.09 0.65 5.72 -51.93 -0.30 0.36 16 39 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 40 H 0.08 0.35 8.12 -51.93 -0.42 -0.07 16 41 H 0.13 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.13 1.02 7.93 -51.93 -0.41 0.61 16 LS Contribution 369.87 15.07 5.57 5.57 Total: -1.00 -35.14 369.87 -7.79 -42.93 By element: Atomic # 1 Polarization: 2.39 SS G_CDS: -5.86 Total: -3.47 kcal Atomic # 6 Polarization: -4.91 SS G_CDS: 0.46 Total: -4.45 kcal Atomic # 7 Polarization: -37.62 SS G_CDS: -0.85 Total: -38.47 kcal Atomic # 8 Polarization: -7.94 SS G_CDS: 0.10 Total: -7.84 kcal Atomic # 9 Polarization: -5.21 SS G_CDS: 0.12 Total: -5.10 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Atomic # 16 Polarization: -3.44 SS G_CDS: -2.30 Total: -5.74 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -35.14 -7.79 -42.93 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074990812.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -138.790 kcal (2) G-P(sol) polarization free energy of solvation -35.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -173.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.930 kcal (6) G-S(sol) free energy of system = (1) + (5) -181.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds