Wall clock time and date at job start Sat Apr 11 2020 05:55:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46888 * 1 3 3 C 1.46899 * 111.00237 * 2 1 4 4 C 1.53006 * 109.46884 * 74.99387 * 3 2 1 5 5 C 1.53005 * 109.47131 * 180.02562 * 4 3 2 6 6 S 1.81000 * 109.47125 * 179.97438 * 5 4 3 7 7 C 1.76199 * 99.99668 * 179.97438 * 6 5 4 8 8 H 1.07993 * 120.00698 * 359.97438 * 7 6 5 9 9 C 1.38806 * 119.99351 * 180.02562 * 7 6 5 10 10 N 1.31621 * 120.00457 * 359.97438 * 9 7 6 11 11 Si 1.86803 * 119.99551 * 179.97438 * 9 7 6 12 12 H 1.48502 * 109.47175 * 89.99715 * 11 9 7 13 13 H 1.48500 * 109.46903 * 209.99971 * 11 9 7 14 14 H 1.48498 * 109.47421 * 329.99860 * 11 9 7 15 15 C 1.46908 * 111.00149 * 236.05011 * 2 1 3 16 16 H 1.08998 * 110.43270 * 309.63532 * 15 2 1 17 17 C 1.54625 * 110.48762 * 72.31729 * 15 2 1 18 18 C 1.54477 * 101.76606 * 143.47670 * 17 15 2 19 19 N 1.46766 * 105.47349 * 334.58695 * 18 17 15 20 20 C 1.46499 * 124.34911 * 197.03406 * 19 18 17 21 21 C 1.52999 * 109.47042 * 269.99945 * 20 19 18 22 22 F 1.39902 * 109.47148 * 60.00457 * 21 20 19 23 23 F 1.39903 * 109.47291 * 180.02562 * 21 20 19 24 24 F 1.39897 * 109.47410 * 300.00218 * 21 20 19 25 25 C 1.34424 * 111.30073 * 17.01560 * 19 18 17 26 26 O 1.21275 * 124.94345 * 179.55826 * 25 19 18 27 27 H 1.09005 * 109.47648 * 54.41202 * 1 2 3 28 28 H 1.08998 * 109.47223 * 174.41581 * 1 2 3 29 29 H 1.09008 * 109.47502 * 294.41349 * 1 2 3 30 30 H 1.09008 * 109.47244 * 314.99505 * 3 2 1 31 31 H 1.08996 * 109.47359 * 194.99446 * 3 2 1 32 32 H 1.09004 * 109.46946 * 299.99930 * 4 3 2 33 33 H 1.08995 * 109.47306 * 60.00170 * 4 3 2 34 34 H 1.08996 * 109.46853 * 299.99901 * 5 4 3 35 35 H 1.08997 * 109.47092 * 59.99177 * 5 4 3 36 36 H 0.96996 * 120.00338 * 180.02562 * 10 9 7 37 37 H 1.08999 * 110.97002 * 261.60223 * 17 15 2 38 38 H 1.09004 * 110.96514 * 25.35742 * 17 15 2 39 39 H 1.08993 * 110.25168 * 215.58529 * 18 17 15 40 40 H 1.08999 * 110.31745 * 93.61956 * 18 17 15 41 41 H 1.08995 * 109.46893 * 30.00065 * 20 19 18 42 42 H 1.09004 * 109.46840 * 150.00390 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.8294 1.9813 1.3934 5 6 2.3772 3.4100 1.3933 6 16 2.1803 4.1318 3.0414 7 6 2.8734 5.7273 2.7613 8 1 3.2544 5.9868 1.7847 9 6 2.9306 6.6504 3.7964 10 7 2.4667 6.3341 4.9868 11 14 3.6661 8.3418 3.4998 12 1 2.5988 9.2751 3.0582 13 1 4.2742 8.8446 4.7577 14 1 4.7099 8.2501 2.4475 15 6 1.9954 -0.7659 -1.1377 16 1 1.5235 -1.7472 -1.1868 17 6 1.7786 0.0086 -2.4583 18 6 3.0636 -0.3391 -3.2420 19 7 4.0704 -0.6562 -2.2222 20 6 5.5138 -0.6952 -2.4698 21 6 5.9201 -2.1074 -2.8959 22 9 5.2368 -2.4562 -4.0658 23 9 7.2986 -2.1449 -3.1317 24 9 5.5967 -3.0125 -1.8794 25 6 3.4980 -0.9058 -1.0319 26 8 4.0987 -1.2007 -0.0204 27 1 -0.3634 0.5981 -0.8357 28 1 -0.3633 -1.0228 -0.1000 29 1 -0.3634 0.4248 0.9358 30 1 1.4472 1.9711 -0.7268 31 1 3.0523 1.3549 -0.2659 32 1 0.7725 1.9979 1.6592 33 1 2.3775 1.3818 2.1201 34 1 3.4341 3.3938 1.1273 35 1 1.8289 4.0093 0.6665 36 1 2.5064 6.9792 5.7100 37 1 0.8930 -0.3523 -2.9813 38 1 1.7116 1.0810 -2.2750 39 1 3.3856 0.5156 -3.8369 40 1 2.8930 -1.2026 -3.8848 41 1 5.7658 0.0099 -3.2618 42 1 6.0462 -0.4235 -1.5582 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000074990812.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:56 Heat of formation + Delta-G solvation = -205.599976 kcal Electronic energy + Delta-G solvation = -27861.667591 eV Core-core repulsion = 23359.019790 eV Total energy + Delta-G solvation = -4502.647801 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.117 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -51.14511 -48.67637 -48.64443 -41.90212 -38.59344 -37.46640 -34.74289 -34.55885 -32.98934 -29.40062 -28.56397 -28.19587 -27.53579 -25.01456 -24.48848 -23.10767 -21.60673 -20.64043 -19.61311 -19.57667 -19.50021 -18.83847 -17.78774 -17.31043 -16.99889 -16.89693 -16.45642 -16.22789 -15.62427 -15.55053 -15.41390 -15.25082 -15.09092 -14.98444 -14.82076 -14.79667 -14.71486 -14.60627 -14.25305 -13.76362 -13.58856 -13.52632 -13.31812 -13.15645 -13.06323 -12.94239 -12.77795 -12.70110 -12.45405 -12.32289 -12.03886 -11.60019 -11.38710 -11.13980 -10.96435 -10.31957 -10.07270 -9.25518 -8.67362 -8.36951 -6.13834 1.24934 1.31257 1.39776 1.47702 1.49446 1.73895 1.87277 2.28353 2.75493 2.81512 2.94680 2.97182 3.19613 3.26878 3.33775 3.61754 3.83985 3.89316 3.97016 4.05250 4.18075 4.22169 4.33440 4.34884 4.50959 4.56652 4.65043 4.66688 4.74702 4.75761 4.94794 5.05165 5.11286 5.17839 5.22664 5.31791 5.39383 5.76710 5.98086 6.05886 6.18139 6.99260 7.04788 8.72630 Molecular weight = 340.12amu Principal moments of inertia in cm(-1) A = 0.014932 B = 0.002424 C = 0.002230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1874.729619 B =11548.356745 C =12551.935466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.543 5.543 3 C 0.075 3.925 4 C -0.080 4.080 5 C -0.084 4.084 6 S -0.202 6.202 7 C -0.537 4.537 8 H 0.074 0.926 9 C 0.013 3.987 10 N -0.909 5.909 11 Si 0.996 3.004 12 H -0.265 1.265 13 H -0.276 1.276 14 H -0.262 1.262 15 C 0.058 3.942 16 H 0.134 0.866 17 C -0.159 4.159 18 C 0.102 3.898 19 N -0.623 5.623 20 C 0.087 3.913 21 C 0.433 3.567 22 F -0.180 7.180 23 F -0.183 7.183 24 F -0.196 7.196 25 C 0.514 3.486 26 O -0.545 6.545 27 H 0.050 0.950 28 H 0.085 0.915 29 H 0.063 0.937 30 H 0.064 0.936 31 H 0.055 0.945 32 H 0.069 0.931 33 H 0.049 0.951 34 H 0.054 0.946 35 H 0.069 0.931 36 H 0.271 0.729 37 H 0.125 0.875 38 H 0.088 0.912 39 H 0.110 0.890 40 H 0.095 0.905 41 H 0.167 0.833 42 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.139 -15.995 -25.271 29.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.267 5.267 3 C -0.054 4.054 4 C -0.119 4.119 5 C -0.233 4.233 6 S 0.026 5.974 7 C -0.684 4.684 8 H 0.092 0.908 9 C -0.191 4.191 10 N -0.545 5.545 11 Si 0.818 3.182 12 H -0.190 1.190 13 H -0.201 1.201 14 H -0.186 1.186 15 C -0.054 4.054 16 H 0.152 0.848 17 C -0.199 4.199 18 C -0.019 4.019 19 N -0.358 5.358 20 C -0.038 4.038 21 C 0.377 3.623 22 F -0.162 7.162 23 F -0.164 7.164 24 F -0.178 7.178 25 C 0.301 3.699 26 O -0.419 6.419 27 H 0.068 0.932 28 H 0.104 0.896 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.074 0.926 32 H 0.088 0.912 33 H 0.068 0.932 34 H 0.073 0.927 35 H 0.088 0.912 36 H 0.080 0.920 37 H 0.144 0.856 38 H 0.107 0.893 39 H 0.128 0.872 40 H 0.113 0.887 41 H 0.184 0.816 42 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -0.084 -16.808 -23.164 28.619 hybrid contribution 1.031 1.372 -1.302 2.154 sum 0.947 -15.436 -24.466 28.944 Atomic orbital electron populations 1.22489 0.84500 1.03216 1.01963 1.61725 1.09932 1.13627 1.41407 1.22007 0.99262 0.88208 0.95939 1.21100 1.01245 0.91940 0.97647 1.23116 1.02223 0.99068 0.98903 1.84744 1.81584 1.16062 1.14961 1.23031 1.46403 0.99082 0.99926 0.90786 1.26109 0.95413 1.03600 0.94021 1.70161 1.44876 1.37100 1.02374 0.84991 0.78594 0.76530 0.78132 1.19029 1.20080 1.18629 1.22540 0.91190 1.00977 0.90703 0.84808 1.23385 0.99459 1.02164 0.94846 1.22461 0.86171 1.03393 0.89879 1.48224 1.05594 1.70004 1.11970 1.22663 0.82566 0.90866 1.07696 1.21564 0.74735 0.91216 0.74813 1.93176 1.79640 1.93770 1.49584 1.93196 1.31730 1.97015 1.94498 1.93211 1.92491 1.71416 1.60666 1.21395 0.91420 0.74783 0.82259 1.90748 1.70457 1.47247 1.33493 0.93155 0.89594 0.91848 0.91848 0.92600 0.91235 0.93174 0.92675 0.91205 0.91978 0.85638 0.89311 0.87178 0.88696 0.81570 0.86478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 9.13 127.69 1.17 1.59 16 2 N -0.54 -12.02 4.69 -897.08 -4.20 -16.23 16 3 C 0.08 1.88 3.79 86.31 0.33 2.21 16 4 C -0.08 -2.72 5.31 30.60 0.16 -2.56 16 5 C -0.08 -3.42 5.67 71.98 0.41 -3.01 16 6 S -0.20 -11.05 21.44 -56.49 -1.21 -12.26 16 7 C -0.54 -31.34 9.50 67.96 0.65 -30.69 16 8 H 0.07 4.13 7.80 -2.91 -0.02 4.10 16 9 C 0.01 0.77 5.49 84.86 0.47 1.23 16 10 N -0.91 -55.69 13.22 21.65 0.29 -55.40 16 11 Si 1.00 44.07 29.55 68.60 2.03 46.09 16 12 H -0.27 -11.16 7.11 99.48 0.71 -10.46 16 13 H -0.28 -11.82 7.11 99.48 0.71 -11.11 16 14 H -0.26 -11.05 7.11 99.48 0.71 -10.34 16 15 C 0.06 0.97 3.00 44.91 0.13 1.11 16 16 H 0.13 1.86 7.99 -2.39 -0.02 1.84 16 17 C -0.16 -1.32 5.98 31.65 0.19 -1.13 16 18 C 0.10 0.72 7.22 86.83 0.63 1.34 16 19 N -0.62 -9.45 2.81 -818.00 -2.30 -11.75 16 20 C 0.09 1.13 5.91 86.38 0.51 1.64 16 21 C 0.43 7.12 3.29 71.98 0.24 7.36 16 22 F -0.18 -2.68 17.09 44.97 0.77 -1.91 16 23 F -0.18 -3.12 17.32 44.97 0.78 -2.34 16 24 F -0.20 -4.66 16.96 44.97 0.76 -3.90 16 25 C 0.51 11.96 5.85 87.90 0.51 12.47 16 26 O -0.54 -18.62 17.59 -3.02 -0.05 -18.67 16 27 H 0.05 0.64 7.67 -2.38 -0.02 0.62 16 28 H 0.09 1.10 7.97 -2.39 -0.02 1.08 16 29 H 0.06 1.26 7.06 -2.38 -0.02 1.25 16 30 H 0.06 1.30 6.55 -2.38 -0.02 1.29 16 31 H 0.06 1.52 6.77 -2.39 -0.02 1.51 16 32 H 0.07 2.30 7.01 -2.39 -0.02 2.29 16 33 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 34 H 0.05 2.27 8.14 -2.40 -0.02 2.25 16 35 H 0.07 2.68 8.14 -2.40 -0.02 2.66 16 36 H 0.27 15.40 8.31 -92.71 -0.77 14.63 16 37 H 0.13 0.35 8.14 -2.39 -0.02 0.33 16 38 H 0.09 0.87 5.72 -2.39 -0.01 0.86 16 39 H 0.11 0.29 8.14 -2.39 -0.02 0.27 16 40 H 0.09 0.42 8.12 -2.39 -0.02 0.41 16 41 H 0.17 0.74 8.14 -2.39 -0.02 0.72 16 42 H 0.12 1.85 7.93 -2.39 -0.02 1.84 16 Total: -1.00 -80.16 369.87 3.28 -76.87 By element: Atomic # 1 Polarization: 6.90 SS G_CDS: 1.04 Total: 7.93 kcal Atomic # 6 Polarization: -13.83 SS G_CDS: 5.39 Total: -8.44 kcal Atomic # 7 Polarization: -77.16 SS G_CDS: -6.21 Total: -83.38 kcal Atomic # 8 Polarization: -18.62 SS G_CDS: -0.05 Total: -18.67 kcal Atomic # 9 Polarization: -10.45 SS G_CDS: 2.31 Total: -8.14 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 2.03 Total: 46.09 kcal Atomic # 16 Polarization: -11.05 SS G_CDS: -1.21 Total: -12.26 kcal Total: -80.16 3.28 -76.87 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074990812.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -128.726 kcal (2) G-P(sol) polarization free energy of solvation -80.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -208.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.874 kcal (6) G-S(sol) free energy of system = (1) + (5) -205.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds