Wall clock time and date at job start Sat Apr 11 2020 05:55:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36930 * 119.99764 * 2 1 4 4 H 1.08007 * 120.00179 * 202.34791 * 3 2 1 5 5 C 1.38809 * 120.00323 * 22.36125 * 3 2 1 6 6 N 1.31621 * 120.00007 * 11.41943 * 5 3 2 7 7 Si 1.86806 * 120.00466 * 191.42415 * 5 3 2 8 8 H 1.48497 * 109.47004 * 89.99389 * 7 5 3 9 9 H 1.48500 * 109.47130 * 209.99807 * 7 5 3 10 10 H 1.48503 * 109.46672 * 329.99706 * 7 5 3 11 11 C 1.46498 * 119.99905 * 180.02562 * 2 1 3 12 12 C 1.50693 * 109.47470 * 270.00209 * 11 2 1 13 13 O 1.21281 * 119.99907 * 0.02562 * 12 11 2 14 14 N 1.34777 * 120.00550 * 180.02562 * 12 11 2 15 15 C 1.46498 * 120.00256 * 180.02562 * 14 12 11 16 16 C 1.47206 * 109.46790 * 179.97438 * 15 14 12 17 17 C 7.11303 * 116.85682 * 151.29340 * 2 1 3 18 18 C 8.42925 * 117.78526 * 155.87511 * 2 1 3 19 19 C 1.39562 * 120.14025 * 87.82928 * 18 17 16 20 20 C 1.37952 * 119.85641 * 179.97438 * 19 18 17 21 21 C 1.38368 * 120.14116 * 359.72480 * 20 19 18 22 22 C 1.38323 * 120.28316 * 0.55086 * 21 20 19 23 23 C 1.50705 * 119.92484 * 179.72698 * 22 21 20 24 24 F 1.39904 * 109.46985 * 269.72008 * 23 22 21 25 25 F 1.39898 * 109.47248 * 29.72303 * 23 22 21 26 26 F 1.39898 * 109.46902 * 149.72499 * 23 22 21 27 27 C 1.37995 * 120.14730 * 359.44680 * 22 21 20 28 28 H 1.09000 * 109.47712 * 274.11675 * 1 2 3 29 29 H 1.09001 * 109.47458 * 34.12289 * 1 2 3 30 30 H 1.09003 * 109.46975 * 154.11818 * 1 2 3 31 31 H 0.97000 * 120.00346 * 180.02562 * 6 5 3 32 32 H 1.09007 * 109.46908 * 150.00359 * 11 2 1 33 33 H 1.09000 * 109.47428 * 30.00890 * 11 2 1 34 34 H 0.97009 * 119.99717 * 359.97438 * 14 12 11 35 35 H 1.08994 * 109.47281 * 59.99873 * 15 14 12 36 36 H 1.08999 * 109.46771 * 299.99287 * 15 14 12 37 37 H 1.07999 * 120.06924 * 359.95076 * 19 18 17 38 38 H 1.07995 * 119.92506 * 179.97438 * 20 19 18 39 39 H 1.08001 * 119.85693 * 180.27436 * 21 20 19 40 40 H 1.07998 * 120.07887 * 180.25612 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1688 1.2211 -0.3556 5 6 1.5338 2.3428 0.4573 6 7 0.3850 2.2688 1.0954 7 14 2.3355 4.0050 0.1671 8 1 1.8647 4.5625 -1.1262 9 1 1.9680 4.9308 1.2685 10 1 3.8111 3.8428 0.1284 11 6 2.1974 -1.2687 -0.0006 12 6 2.4486 -1.7045 1.4200 13 8 2.0541 -1.0226 2.3421 14 7 3.1116 -2.8519 1.6658 15 6 3.3552 -3.2757 3.0468 16 6 4.0913 -4.5505 3.0461 17 6 4.6784 -5.5658 3.0480 18 6 5.3944 -6.8060 3.0480 19 6 5.7051 -7.4358 1.8420 20 6 6.3955 -8.6301 1.8487 21 6 6.7848 -9.2008 3.0476 22 6 6.4749 -8.5845 4.2466 23 6 6.8974 -9.2164 5.5479 24 9 5.8869 -10.0713 6.0010 25 9 8.0736 -9.9478 5.3510 26 9 7.1239 -8.2166 6.4999 27 6 5.7848 -7.3896 4.2536 28 1 -0.3634 0.0738 1.0250 29 1 -0.3634 0.8507 -0.5765 30 1 -0.3633 -0.9246 -0.4486 31 1 -0.0455 3.0772 1.4147 32 1 3.1499 -1.1381 -0.5143 33 1 1.6085 -2.0281 -0.5149 34 1 3.4268 -3.3975 0.9282 35 1 2.4026 -3.4069 3.5600 36 1 3.9437 -2.5162 3.5614 37 1 5.4054 -6.9892 0.9054 38 1 6.6362 -9.1185 0.9161 39 1 7.3290 -10.1337 3.0474 40 1 5.5470 -6.9073 5.1903 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075828700.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:58 Heat of formation + Delta-G solvation = -79.568776 kcal Electronic energy + Delta-G solvation = -26913.893805 eV Core-core repulsion = 22281.267175 eV Total energy + Delta-G solvation = -4632.626629 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.114 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -50.58728 -48.10501 -48.04363 -39.93924 -38.88453 -35.65049 -34.86625 -33.66743 -32.42291 -31.37223 -30.90413 -28.03304 -26.53712 -26.07664 -25.60952 -23.54498 -22.58165 -21.57168 -19.85026 -19.48474 -18.91289 -18.79458 -17.40305 -16.85034 -16.73869 -16.20857 -15.81859 -15.59122 -15.08818 -14.95283 -14.84509 -14.68375 -14.54349 -14.42409 -14.20041 -14.17324 -13.91969 -13.71274 -13.55228 -13.31927 -13.15436 -12.88863 -12.61007 -12.15419 -11.98634 -11.72521 -11.34604 -11.09886 -10.86188 -10.75610 -10.63855 -10.35561 -10.00146 -9.88362 -9.81210 -9.12256 -9.07833 -8.58075 -8.48161 -6.76610 -5.68506 -3.15474 0.21788 0.49528 2.04368 2.24405 2.35998 3.23070 3.30691 3.40088 3.45925 3.46504 3.48603 3.53590 3.69545 3.93837 3.97569 4.28322 4.38846 4.52500 4.53042 4.79466 4.85096 5.12765 5.35334 5.43842 5.54690 5.56751 5.59273 5.60228 5.67462 5.79982 5.96172 6.13152 6.13814 6.27999 6.74051 6.79863 7.16335 7.39887 7.76582 7.86189 8.02582 8.40110 9.04739 9.24101 9.85260 10.32433 11.36049 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.025414 B = 0.001581 C = 0.001558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1101.478904 B =17710.113729 C =17973.205542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.163 3.837 2 N -0.572 5.572 3 C -0.260 4.260 4 H 0.070 0.930 5 C 0.008 3.992 6 N -0.896 5.896 7 Si 0.907 3.093 8 H -0.287 1.287 9 H -0.291 1.291 10 H -0.279 1.279 11 C 0.134 3.866 12 C 0.471 3.529 13 O -0.505 6.505 14 N -0.749 5.749 15 C 0.225 3.775 16 C -0.125 4.125 17 C -0.154 4.154 18 C 0.030 3.970 19 C -0.066 4.066 20 C -0.116 4.116 21 C -0.068 4.068 22 C -0.182 4.182 23 C 0.510 3.490 24 F -0.175 7.175 25 F -0.176 7.176 26 F -0.175 7.175 27 C -0.052 4.052 28 H 0.034 0.966 29 H 0.049 0.951 30 H -0.004 1.004 31 H 0.253 0.747 32 H 0.075 0.925 33 H 0.068 0.932 34 H 0.394 0.606 35 H 0.091 0.909 36 H 0.092 0.908 37 H 0.139 0.861 38 H 0.142 0.858 39 H 0.139 0.861 40 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.206 -27.490 2.984 30.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.291 5.291 3 C -0.390 4.390 4 H 0.088 0.912 5 C -0.191 4.191 6 N -0.539 5.539 7 Si 0.737 3.263 8 H -0.214 1.214 9 H -0.217 1.217 10 H -0.205 1.205 11 C 0.001 3.999 12 C 0.255 3.745 13 O -0.377 6.377 14 N -0.407 5.407 15 C 0.102 3.898 16 C -0.126 4.126 17 C -0.156 4.156 18 C 0.030 3.970 19 C -0.084 4.084 20 C -0.134 4.134 21 C -0.086 4.086 22 C -0.183 4.183 23 C 0.456 3.544 24 F -0.157 7.157 25 F -0.158 7.158 26 F -0.157 7.157 27 C -0.070 4.070 28 H 0.052 0.948 29 H 0.068 0.932 30 H 0.015 0.985 31 H 0.063 0.937 32 H 0.092 0.908 33 H 0.086 0.914 34 H 0.228 0.772 35 H 0.109 0.891 36 H 0.109 0.891 37 H 0.157 0.843 38 H 0.160 0.840 39 H 0.157 0.843 40 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 12.730 -26.741 3.766 29.855 hybrid contribution 0.716 0.438 0.192 0.860 sum 13.445 -26.304 3.958 29.805 Atomic orbital electron populations 1.20873 0.81850 0.95600 0.99838 1.43899 1.02169 0.99793 1.83248 1.19163 0.98359 0.84861 1.36611 0.91210 1.25107 0.97687 0.98698 0.97637 1.70098 1.17666 1.27021 1.39119 0.86224 0.78854 0.83954 0.77246 1.21406 1.21689 1.20483 1.21045 0.98091 0.90384 0.90413 1.23889 0.76246 0.78629 0.95762 1.90719 1.48437 1.52246 1.46252 1.46717 1.61754 1.26175 1.06081 1.18144 0.97892 0.86687 0.87090 1.22451 0.96348 0.94312 0.99463 1.18749 1.01087 0.94170 1.01566 1.15708 0.97865 0.90441 0.93025 1.21532 0.94988 0.94258 0.97654 1.21114 0.98475 0.95614 0.98159 1.21067 0.96976 0.99545 0.91007 1.19845 1.07138 0.98807 0.92501 1.18242 0.74944 0.76395 0.84840 1.93241 1.60360 1.71654 1.90411 1.93194 1.49015 1.78452 1.95113 1.93213 1.94552 1.60872 1.67018 1.20996 0.94334 0.92931 0.98777 0.94764 0.93212 0.98501 0.93716 0.90751 0.91361 0.77249 0.89142 0.89071 0.84276 0.84049 0.84335 0.84141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.11 9.01 59.85 0.54 4.65 16 2 N -0.57 -14.57 2.41 -182.50 -0.44 -15.01 16 3 C -0.26 -7.27 9.67 -15.06 -0.15 -7.42 16 4 H 0.07 1.88 7.85 -52.48 -0.41 1.47 16 5 C 0.01 0.24 5.13 -17.43 -0.09 0.15 16 6 N -0.90 -27.04 10.59 55.49 0.59 -26.45 16 7 Si 0.91 22.27 29.57 -169.99 -5.03 17.24 16 8 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 9 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 10 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 11 C 0.13 2.62 6.19 -5.20 -0.03 2.59 16 12 C 0.47 9.40 7.90 -10.99 -0.09 9.31 16 13 O -0.51 -12.99 16.43 5.56 0.09 -12.90 16 14 N -0.75 -10.90 5.54 -63.16 -0.35 -11.25 16 15 C 0.23 3.02 6.15 -6.83 -0.04 2.98 16 16 C -0.13 -1.47 13.45 -37.13 -0.50 -1.97 16 17 C -0.15 -1.68 13.23 -38.85 -0.51 -2.19 16 18 C 0.03 0.27 5.72 -107.00 -0.61 -0.35 16 19 C -0.07 -0.45 9.75 -39.19 -0.38 -0.84 16 20 C -0.12 -0.61 10.03 -39.64 -0.40 -1.01 16 21 C -0.07 -0.41 9.39 -39.50 -0.37 -0.78 16 22 C -0.18 -1.39 5.45 -104.68 -0.57 -1.96 16 23 C 0.51 4.09 3.36 36.01 0.12 4.21 16 24 F -0.18 -1.52 17.30 2.25 0.04 -1.48 16 25 F -0.18 -1.39 16.44 2.25 0.04 -1.35 16 26 F -0.18 -1.56 16.46 2.25 0.04 -1.52 16 27 C -0.05 -0.44 9.10 -39.19 -0.36 -0.80 16 28 H 0.03 0.97 7.42 -51.93 -0.39 0.58 16 29 H 0.05 1.32 7.18 -51.93 -0.37 0.95 16 30 H 0.00 -0.08 7.85 -51.93 -0.41 -0.48 16 31 H 0.25 7.36 8.31 -40.82 -0.34 7.02 16 32 H 0.07 1.32 8.03 -51.92 -0.42 0.90 16 33 H 0.07 1.12 7.86 -51.93 -0.41 0.71 16 34 H 0.39 4.47 8.45 -40.82 -0.34 4.13 16 35 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 36 H 0.09 1.29 8.14 -51.93 -0.42 0.86 16 37 H 0.14 0.74 8.06 -52.49 -0.42 0.32 16 38 H 0.14 0.37 8.06 -52.49 -0.42 -0.06 16 39 H 0.14 0.56 7.58 -52.49 -0.40 0.17 16 40 H 0.14 1.12 7.60 -52.49 -0.40 0.72 16 LS Contribution 370.15 15.07 5.58 5.58 Total: -1.00 -34.84 370.15 -7.26 -42.10 By element: Atomic # 1 Polarization: 2.84 SS G_CDS: -4.37 Total: -1.53 kcal Atomic # 6 Polarization: 10.02 SS G_CDS: -3.44 Total: 6.58 kcal Atomic # 7 Polarization: -52.52 SS G_CDS: -0.20 Total: -52.72 kcal Atomic # 8 Polarization: -12.99 SS G_CDS: 0.09 Total: -12.90 kcal Atomic # 9 Polarization: -4.46 SS G_CDS: 0.11 Total: -4.35 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.03 Total: 17.24 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -34.84 -7.26 -42.10 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075828700.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.470 kcal (2) G-P(sol) polarization free energy of solvation -34.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.098 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds