Wall clock time and date at job start Sat Apr 11 2020 05:55:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36930 * 119.99764 * 2 1 4 4 H 1.08007 * 120.00179 * 202.34791 * 3 2 1 5 5 C 1.38809 * 120.00323 * 22.36125 * 3 2 1 6 6 N 1.31621 * 120.00007 * 11.41943 * 5 3 2 7 7 Si 1.86806 * 120.00466 * 191.42415 * 5 3 2 8 8 H 1.48497 * 109.47004 * 89.99389 * 7 5 3 9 9 H 1.48500 * 109.47130 * 209.99807 * 7 5 3 10 10 H 1.48503 * 109.46672 * 329.99706 * 7 5 3 11 11 C 1.46498 * 119.99905 * 180.02562 * 2 1 3 12 12 C 1.50693 * 109.47470 * 270.00209 * 11 2 1 13 13 O 1.21281 * 119.99907 * 0.02562 * 12 11 2 14 14 N 1.34777 * 120.00550 * 180.02562 * 12 11 2 15 15 C 1.46498 * 120.00256 * 180.02562 * 14 12 11 16 16 C 1.47206 * 109.46790 * 179.97438 * 15 14 12 17 17 C 7.11303 * 116.85682 * 151.29340 * 2 1 3 18 18 C 8.42925 * 117.78526 * 155.87511 * 2 1 3 19 19 C 1.39562 * 120.14025 * 87.82928 * 18 17 16 20 20 C 1.37952 * 119.85641 * 179.97438 * 19 18 17 21 21 C 1.38368 * 120.14116 * 359.72480 * 20 19 18 22 22 C 1.38323 * 120.28316 * 0.55086 * 21 20 19 23 23 C 1.50705 * 119.92484 * 179.72698 * 22 21 20 24 24 F 1.39904 * 109.46985 * 269.72008 * 23 22 21 25 25 F 1.39898 * 109.47248 * 29.72303 * 23 22 21 26 26 F 1.39898 * 109.46902 * 149.72499 * 23 22 21 27 27 C 1.37995 * 120.14730 * 359.44680 * 22 21 20 28 28 H 1.09000 * 109.47712 * 274.11675 * 1 2 3 29 29 H 1.09001 * 109.47458 * 34.12289 * 1 2 3 30 30 H 1.09003 * 109.46975 * 154.11818 * 1 2 3 31 31 H 0.97000 * 120.00346 * 180.02562 * 6 5 3 32 32 H 1.09007 * 109.46908 * 150.00359 * 11 2 1 33 33 H 1.09000 * 109.47428 * 30.00890 * 11 2 1 34 34 H 0.97009 * 119.99717 * 359.97438 * 14 12 11 35 35 H 1.08994 * 109.47281 * 59.99873 * 15 14 12 36 36 H 1.08999 * 109.46771 * 299.99287 * 15 14 12 37 37 H 1.07999 * 120.06924 * 359.95076 * 19 18 17 38 38 H 1.07995 * 119.92506 * 179.97438 * 20 19 18 39 39 H 1.08001 * 119.85693 * 180.27436 * 21 20 19 40 40 H 1.07998 * 120.07887 * 180.25612 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1688 1.2211 -0.3556 5 6 1.5338 2.3428 0.4573 6 7 0.3850 2.2688 1.0954 7 14 2.3355 4.0050 0.1671 8 1 1.8647 4.5625 -1.1262 9 1 1.9680 4.9308 1.2685 10 1 3.8111 3.8428 0.1284 11 6 2.1974 -1.2687 -0.0006 12 6 2.4486 -1.7045 1.4200 13 8 2.0541 -1.0226 2.3421 14 7 3.1116 -2.8519 1.6658 15 6 3.3552 -3.2757 3.0468 16 6 4.0913 -4.5505 3.0461 17 6 4.6784 -5.5658 3.0480 18 6 5.3944 -6.8060 3.0480 19 6 5.7051 -7.4358 1.8420 20 6 6.3955 -8.6301 1.8487 21 6 6.7848 -9.2008 3.0476 22 6 6.4749 -8.5845 4.2466 23 6 6.8974 -9.2164 5.5479 24 9 5.8869 -10.0713 6.0010 25 9 8.0736 -9.9478 5.3510 26 9 7.1239 -8.2166 6.4999 27 6 5.7848 -7.3896 4.2536 28 1 -0.3634 0.0738 1.0250 29 1 -0.3634 0.8507 -0.5765 30 1 -0.3633 -0.9246 -0.4486 31 1 -0.0455 3.0772 1.4147 32 1 3.1499 -1.1381 -0.5143 33 1 1.6085 -2.0281 -0.5149 34 1 3.4268 -3.3975 0.9282 35 1 2.4026 -3.4069 3.5600 36 1 3.9437 -2.5162 3.5614 37 1 5.4054 -6.9892 0.9054 38 1 6.6362 -9.1185 0.9161 39 1 7.3290 -10.1337 3.0474 40 1 5.5470 -6.9073 5.1903 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075828700.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:58 Heat of formation + Delta-G solvation = -100.668261 kcal Electronic energy + Delta-G solvation = -26914.808747 eV Core-core repulsion = 22281.267175 eV Total energy + Delta-G solvation = -4633.541572 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.114 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -51.23229 -48.75212 -48.69860 -40.52311 -40.43002 -37.23206 -36.36115 -34.68829 -33.30462 -32.97486 -31.85947 -29.48925 -27.92863 -27.22054 -27.09010 -24.24323 -23.44313 -23.13342 -21.34724 -20.19544 -19.55937 -19.42987 -18.85445 -18.45089 -17.42985 -17.31446 -17.04697 -16.51652 -16.42746 -16.30951 -15.61252 -15.46707 -15.43302 -15.22495 -15.14429 -15.09438 -14.95547 -14.85663 -14.67852 -14.54931 -14.31819 -14.12873 -13.71538 -13.66562 -13.04967 -12.79959 -12.67821 -12.56144 -12.50690 -12.22865 -12.07636 -12.02577 -11.85670 -11.65779 -10.85420 -10.51578 -10.32638 -10.12540 -9.61197 -8.79662 -7.79837 -5.29286 -0.36055 -0.05801 1.14577 1.46383 1.48633 1.56891 1.58980 1.66056 1.95224 2.44305 2.54069 2.63804 2.67055 2.85152 3.02291 3.35082 3.38029 3.73173 3.76092 3.90953 4.03054 4.13685 4.27519 4.32017 4.45360 4.58251 4.62024 4.67026 4.76437 4.81269 4.84954 5.01891 5.18354 5.25584 5.33330 5.49807 5.63455 5.63885 5.77811 6.27441 6.30808 6.73516 7.15227 7.53987 7.87083 8.27709 9.23868 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.025414 B = 0.001581 C = 0.001558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1101.478904 B =17710.113729 C =17973.205542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.178 3.822 2 N -0.593 5.593 3 C -0.263 4.263 4 H 0.079 0.921 5 C -0.057 4.057 6 N -0.935 5.935 7 Si 0.972 3.028 8 H -0.279 1.279 9 H -0.301 1.301 10 H -0.267 1.267 11 C 0.128 3.872 12 C 0.476 3.524 13 O -0.572 6.572 14 N -0.724 5.724 15 C 0.233 3.767 16 C -0.156 4.156 17 C -0.127 4.127 18 C -0.001 4.001 19 C -0.062 4.062 20 C -0.107 4.107 21 C -0.061 4.061 22 C -0.192 4.192 23 C 0.511 3.489 24 F -0.181 7.181 25 F -0.175 7.175 26 F -0.183 7.183 27 C -0.061 4.061 28 H -0.008 1.008 29 H 0.024 0.976 30 H 0.038 0.962 31 H 0.245 0.755 32 H 0.100 0.900 33 H 0.109 0.891 34 H 0.415 0.585 35 H 0.085 0.915 36 H 0.081 0.919 37 H 0.157 0.843 38 H 0.177 0.823 39 H 0.161 0.839 40 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.387 -30.212 1.000 33.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 N -0.313 5.313 3 C -0.393 4.393 4 H 0.096 0.904 5 C -0.252 4.252 6 N -0.581 5.581 7 Si 0.800 3.200 8 H -0.205 1.205 9 H -0.228 1.228 10 H -0.192 1.192 11 C -0.003 4.003 12 C 0.261 3.739 13 O -0.448 6.448 14 N -0.381 5.381 15 C 0.110 3.890 16 C -0.156 4.156 17 C -0.128 4.128 18 C -0.001 4.001 19 C -0.079 4.079 20 C -0.124 4.124 21 C -0.079 4.079 22 C -0.193 4.193 23 C 0.457 3.543 24 F -0.162 7.162 25 F -0.156 7.156 26 F -0.165 7.165 27 C -0.079 4.079 28 H 0.010 0.990 29 H 0.043 0.957 30 H 0.057 0.943 31 H 0.054 0.946 32 H 0.118 0.882 33 H 0.127 0.873 34 H 0.251 0.749 35 H 0.103 0.897 36 H 0.099 0.901 37 H 0.174 0.826 38 H 0.194 0.806 39 H 0.178 0.822 40 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 14.978 -29.560 1.742 33.184 hybrid contribution 0.183 0.962 0.794 1.261 sum 15.161 -28.598 2.536 32.468 Atomic orbital electron populations 1.20575 0.82431 0.96520 0.97213 1.44054 1.02314 1.01206 1.83766 1.19573 0.98527 0.86126 1.35069 0.90355 1.25945 0.98568 1.02383 0.98329 1.70307 1.19411 1.27177 1.41207 0.85200 0.78454 0.79544 0.76800 1.20542 1.22818 1.19178 1.21303 0.99452 0.89106 0.90408 1.23554 0.75960 0.79245 0.95125 1.90715 1.51496 1.54690 1.47914 1.46208 1.59668 1.24636 1.07626 1.17932 0.97856 0.87441 0.85776 1.21937 0.98002 0.94514 1.01172 1.19152 0.99842 0.94074 0.99729 1.15868 0.99592 0.90423 0.94225 1.21807 0.94256 0.94529 0.97357 1.21504 0.96942 0.94754 0.99222 1.21445 0.95932 0.99961 0.90543 1.19873 1.07748 0.98809 0.92886 1.18310 0.74856 0.76186 0.84929 1.93230 1.60606 1.71824 1.90531 1.93194 1.48903 1.78404 1.95082 1.93196 1.94600 1.61230 1.67454 1.20997 0.94789 0.93464 0.98637 0.98962 0.95695 0.94336 0.94603 0.88246 0.87314 0.74861 0.89721 0.90070 0.82564 0.80587 0.82153 0.84665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.07 9.01 127.77 1.15 10.22 16 2 N -0.59 -29.99 2.41 -731.32 -1.76 -31.75 16 3 C -0.26 -14.67 9.67 84.03 0.81 -13.86 16 4 H 0.08 4.13 7.85 -2.91 -0.02 4.11 16 5 C -0.06 -3.34 5.13 84.86 0.44 -2.90 16 6 N -0.94 -58.66 10.59 21.65 0.23 -58.43 16 7 Si 0.97 46.56 29.57 68.60 2.03 48.59 16 8 H -0.28 -12.83 7.11 99.48 0.71 -12.13 16 9 H -0.30 -14.79 7.11 99.48 0.71 -14.08 16 10 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 11 C 0.13 4.74 6.19 85.63 0.53 5.27 16 12 C 0.48 18.61 7.90 87.65 0.69 19.30 16 13 O -0.57 -30.05 16.43 -3.03 -0.05 -30.10 16 14 N -0.72 -19.99 5.54 -472.14 -2.61 -22.60 16 15 C 0.23 6.21 6.15 84.58 0.52 6.73 16 16 C -0.16 -3.51 13.45 31.14 0.42 -3.09 16 17 C -0.13 -2.58 13.23 30.03 0.40 -2.18 16 18 C 0.00 -0.02 5.72 -21.41 -0.12 -0.14 16 19 C -0.06 -0.64 9.75 22.52 0.22 -0.42 16 20 C -0.11 -0.69 10.03 22.23 0.22 -0.46 16 21 C -0.06 -0.53 9.39 22.32 0.21 -0.32 16 22 C -0.19 -2.59 5.45 -19.90 -0.11 -2.70 16 23 C 0.51 7.61 3.36 71.24 0.24 7.85 16 24 F -0.18 -2.95 17.30 44.97 0.78 -2.18 16 25 F -0.17 -2.46 16.44 44.97 0.74 -1.72 16 26 F -0.18 -3.19 16.46 44.97 0.74 -2.45 16 27 C -0.06 -0.96 9.10 22.52 0.20 -0.76 16 28 H -0.01 -0.48 7.42 -2.39 -0.02 -0.50 16 29 H 0.02 1.34 7.18 -2.39 -0.02 1.33 16 30 H 0.04 1.59 7.85 -2.39 -0.02 1.57 16 31 H 0.24 14.94 8.31 -92.71 -0.77 14.17 16 32 H 0.10 3.20 8.03 -2.38 -0.02 3.18 16 33 H 0.11 3.14 7.86 -2.39 -0.02 3.12 16 34 H 0.41 8.22 8.45 -92.70 -0.78 7.43 16 35 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 36 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 37 H 0.16 1.04 8.06 -2.91 -0.02 1.01 16 38 H 0.18 -0.06 8.06 -2.91 -0.02 -0.08 16 39 H 0.16 0.68 7.58 -2.91 -0.02 0.65 16 40 H 0.14 2.16 7.60 -2.91 -0.02 2.14 16 Total: -1.00 -79.08 370.15 6.23 -72.85 By element: Atomic # 1 Polarization: 4.92 SS G_CDS: 0.32 Total: 5.24 kcal Atomic # 6 Polarization: 16.73 SS G_CDS: 5.82 Total: 22.55 kcal Atomic # 7 Polarization: -108.64 SS G_CDS: -4.15 Total: -112.79 kcal Atomic # 8 Polarization: -30.05 SS G_CDS: -0.05 Total: -30.10 kcal Atomic # 9 Polarization: -8.60 SS G_CDS: 2.26 Total: -6.34 kcal Atomic # 14 Polarization: 46.56 SS G_CDS: 2.03 Total: 48.59 kcal Total: -79.08 6.23 -72.85 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075828700.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.822 kcal (2) G-P(sol) polarization free energy of solvation -79.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.846 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds