Wall clock time and date at job start Sat Apr 11 2020 05:56:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35711 * 116.99904 * 2 1 4 4 C 1.39001 * 119.91252 * 179.97438 * 3 2 1 5 5 C 1.37702 * 120.08857 * 180.02562 * 4 3 2 6 6 C 1.39735 * 119.90843 * 359.97438 * 5 4 3 7 7 C 1.47606 * 120.08640 * 179.97438 * 6 5 4 8 8 O 1.21587 * 120.00059 * 0.02562 * 7 6 5 9 9 N 1.34775 * 120.00132 * 179.97438 * 7 6 5 10 10 N 1.40100 * 120.00096 * 179.97438 * 9 7 6 11 11 C 1.34775 * 120.00096 * 179.97438 * 10 9 7 12 12 O 1.21542 * 120.00077 * 0.02562 * 11 10 9 13 13 C 1.47883 * 119.99826 * 179.97438 * 11 10 9 14 14 C 1.39921 * 120.03028 * 359.97438 * 13 11 10 15 15 C 1.38321 * 120.36177 * 180.02562 * 14 13 11 16 16 C 1.37753 * 120.41636 * 359.97438 * 15 14 13 17 17 C 1.40754 * 120.03529 * 0.03529 * 16 15 14 18 18 C 1.41435 * 120.17660 * 179.97438 * 17 16 15 19 19 H 1.08002 * 119.99792 * 24.37032 * 18 17 16 20 20 C 1.39937 * 120.00029 * 204.36128 * 18 17 16 21 21 N 1.30828 * 120.00202 * 17.86125 * 20 18 17 22 22 Si 1.86804 * 120.00094 * 197.85585 * 20 18 17 23 23 H 1.48503 * 109.46909 * 0.02562 * 22 20 18 24 24 H 1.48504 * 109.46871 * 120.00054 * 22 20 18 25 25 H 1.48498 * 109.47266 * 240.00165 * 22 20 18 26 26 C 1.38999 * 120.02296 * 180.02562 * 13 11 10 27 27 C 1.39733 * 119.82936 * 0.25313 * 6 5 4 28 28 C 1.37710 * 119.90733 * 359.51228 * 27 6 5 29 29 H 1.09001 * 109.47130 * 60.00554 * 1 2 3 30 30 H 1.09000 * 109.47105 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47303 * 300.00034 * 1 2 3 32 32 H 1.07999 * 119.95140 * 359.97438 * 4 3 2 33 33 H 1.07994 * 120.04532 * 179.97438 * 5 4 3 34 34 H 0.96996 * 120.00086 * 0.02562 * 9 7 6 35 35 H 0.97004 * 120.00141 * 0.02562 * 10 9 7 36 36 H 1.08003 * 119.81853 * 0.02562 * 14 13 11 37 37 H 1.08002 * 119.79669 * 179.97438 * 15 14 13 38 38 H 1.07998 * 119.98458 * 179.97438 * 16 15 14 39 39 H 0.96991 * 120.00411 * 180.02562 * 21 20 18 40 40 H 1.07997 * 120.20633 * 359.70283 * 26 13 11 41 41 H 1.07997 * 120.04697 * 179.72894 * 27 6 5 42 42 H 1.07997 * 119.95298 * 180.23152 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2092 0.0000 4 6 3.4333 1.2799 0.0005 5 6 4.0622 2.5049 0.0011 6 6 3.3028 3.6779 0.0005 7 6 3.9729 4.9931 0.0017 8 8 5.1871 5.0568 0.0026 9 7 3.2388 6.1234 0.0006 10 7 3.8748 7.3717 0.0023 11 6 3.1407 8.5020 0.0007 12 8 1.9270 8.4384 -0.0017 13 6 3.8121 9.8197 0.0030 14 6 5.2094 9.8936 0.0073 15 6 5.8445 11.1224 0.0100 16 6 5.1093 12.2874 0.0079 17 6 3.7029 12.2330 0.0038 18 6 2.9452 13.4272 0.0022 19 1 3.3764 14.3398 -0.3820 20 6 1.6367 13.4264 0.4982 21 7 1.2300 12.4508 1.2692 22 14 0.4706 14.8183 0.0597 23 1 1.1685 15.7902 -0.8198 24 1 -0.7116 14.2683 -0.6511 25 1 0.0277 15.5026 1.3010 26 6 3.0556 10.9857 0.0019 27 6 1.9076 3.6027 0.0048 28 6 1.2862 2.3737 -0.0006 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 4.0194 0.3727 0.0014 33 1 5.1408 2.5590 0.0019 34 1 2.2702 6.0726 -0.0005 35 1 4.8435 7.4226 0.0038 36 1 5.7952 8.9863 0.0086 37 1 6.9235 11.1689 0.0138 38 1 5.6124 13.2431 0.0105 39 1 0.3230 12.4499 1.6127 40 1 1.9769 10.9335 -0.0055 41 1 1.3173 4.5070 0.0088 42 1 0.2078 2.3147 -0.0011 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000077925189.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:00 Heat of formation + Delta-G solvation = -46.447701 kcal Electronic energy + Delta-G solvation = -27215.372199 eV Core-core repulsion = 23126.038547 eV Total energy + Delta-G solvation = -4089.333651 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.126 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.83889 -41.10825 -40.27063 -38.89320 -38.12254 -36.54683 -35.63651 -33.50514 -32.27576 -31.78141 -31.33859 -30.62650 -28.27708 -27.22068 -25.16474 -24.29121 -23.46613 -22.85705 -22.41695 -21.40742 -19.85871 -19.32232 -19.04924 -18.53573 -17.54072 -17.14884 -16.90087 -16.80575 -16.62999 -16.49056 -16.19648 -15.80321 -15.65171 -15.33960 -15.10982 -14.72751 -14.59179 -14.44811 -14.32554 -13.81108 -13.66213 -13.52009 -13.01977 -12.84042 -12.81119 -12.64506 -12.50550 -12.20318 -12.08237 -11.98526 -11.89723 -11.55131 -11.51974 -11.09453 -11.04285 -10.19018 -9.80639 -9.51366 -9.43276 -9.26074 -8.68169 -6.39144 -0.28516 0.23886 0.25378 0.65544 0.97385 1.38454 1.45660 1.54389 1.57467 1.98013 2.19634 2.23581 2.70416 2.74537 2.88016 3.46390 3.62133 3.65734 3.79448 3.90526 4.07421 4.25318 4.37434 4.40512 4.40857 4.51699 4.53407 4.75429 4.84403 4.87618 4.99787 5.05401 5.12115 5.13997 5.20890 5.28410 5.42024 5.46481 5.52945 5.62386 5.82854 5.90962 6.02651 6.24686 6.27842 6.39266 6.56894 6.70454 6.86528 6.90409 7.20862 8.28902 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.017805 B = 0.002107 C = 0.001895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1572.235559 B =13283.142248 C =14768.958925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 O -0.324 6.324 3 C 0.156 3.844 4 C -0.163 4.163 5 C -0.018 4.018 6 C -0.185 4.185 7 C 0.564 3.436 8 O -0.571 6.571 9 N -0.515 5.515 10 N -0.516 5.516 11 C 0.570 3.430 12 O -0.574 6.574 13 C -0.129 4.129 14 C -0.203 4.203 15 C -0.092 4.092 16 C -0.212 4.212 17 C 0.068 3.932 18 C -0.492 4.492 19 H 0.086 0.914 20 C 0.030 3.970 21 N -0.822 5.822 22 Si 0.983 3.017 23 H -0.252 1.252 24 H -0.269 1.269 25 H -0.265 1.265 26 C -0.122 4.122 27 C -0.042 4.042 28 C -0.213 4.213 29 H 0.069 0.931 30 H 0.122 0.878 31 H 0.068 0.932 32 H 0.157 0.843 33 H 0.146 0.854 34 H 0.434 0.566 35 H 0.437 0.563 36 H 0.128 0.872 37 H 0.139 0.861 38 H 0.112 0.888 39 H 0.288 0.712 40 H 0.107 0.893 41 H 0.142 0.858 42 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.109 -22.112 -2.022 22.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.237 6.237 3 C 0.110 3.890 4 C -0.181 4.181 5 C -0.037 4.037 6 C -0.189 4.189 7 C 0.354 3.646 8 O -0.451 6.451 9 N -0.263 5.263 10 N -0.266 5.266 11 C 0.360 3.640 12 O -0.453 6.453 13 C -0.134 4.134 14 C -0.223 4.223 15 C -0.110 4.110 16 C -0.232 4.232 17 C 0.065 3.935 18 C -0.521 4.521 19 H 0.104 0.896 20 C -0.185 4.185 21 N -0.448 5.448 22 Si 0.803 3.197 23 H -0.175 1.175 24 H -0.194 1.194 25 H -0.190 1.190 26 C -0.143 4.143 27 C -0.061 4.061 28 C -0.231 4.231 29 H 0.087 0.913 30 H 0.140 0.860 31 H 0.087 0.913 32 H 0.175 0.825 33 H 0.163 0.837 34 H 0.278 0.722 35 H 0.282 0.718 36 H 0.146 0.854 37 H 0.156 0.844 38 H 0.130 0.870 39 H 0.099 0.901 40 H 0.124 0.876 41 H 0.160 0.840 42 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -2.239 -22.398 -1.873 22.588 hybrid contribution -0.868 0.910 0.061 1.259 sum -3.107 -21.488 -1.812 21.787 Atomic orbital electron populations 1.23468 0.75900 1.06046 1.02733 1.86050 1.23906 1.26346 1.87368 1.19507 0.92652 0.84842 0.92048 1.20592 0.91718 0.98775 1.07034 1.21110 1.00919 0.89763 0.91872 1.19412 0.94406 0.90968 1.14139 1.18714 0.86729 0.83281 0.75856 1.90770 1.14346 1.87401 1.52540 1.44846 1.09953 0.95809 1.75668 1.44837 1.09719 0.95486 1.76521 1.18844 0.86494 0.83593 0.75048 1.90683 1.14849 1.87470 1.52304 1.19390 0.94747 0.90239 1.08997 1.20822 0.91601 0.98213 1.11673 1.20899 0.99696 0.91707 0.98711 1.21438 0.93326 0.98079 1.10356 1.17947 0.92687 0.93007 0.89817 1.19894 0.98329 0.96446 1.37437 0.89613 1.26853 1.00133 0.99655 0.91881 1.69874 1.19349 1.32633 1.22899 0.85144 0.77468 0.77791 0.79268 1.17528 1.19415 1.18958 1.21429 0.99387 0.91130 1.02314 1.21309 0.92510 0.98976 0.93277 1.21438 1.01884 0.91030 1.08758 0.91262 0.86028 0.91289 0.82529 0.83657 0.72171 0.71791 0.85441 0.84372 0.86995 0.90130 0.87557 0.84050 0.82031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.08 9.81 113.37 1.11 1.19 16 2 O -0.32 -4.44 10.48 -90.32 -0.95 -5.39 16 3 C 0.16 2.44 6.70 22.63 0.15 2.59 16 4 C -0.16 -2.63 9.97 22.33 0.22 -2.40 16 5 C -0.02 -0.34 9.58 22.50 0.22 -0.13 16 6 C -0.18 -4.10 5.88 -20.08 -0.12 -4.22 16 7 C 0.56 16.19 7.88 86.72 0.68 16.88 16 8 O -0.57 -19.38 16.18 -3.99 -0.06 -19.44 16 9 N -0.51 -15.59 6.21 -175.76 -1.09 -16.68 16 10 N -0.52 -18.24 6.21 -175.58 -1.09 -19.33 16 11 C 0.57 24.69 7.89 86.80 0.68 25.37 16 12 O -0.57 -27.78 16.17 -3.85 -0.06 -27.85 16 13 C -0.13 -6.03 5.87 -20.13 -0.12 -6.15 16 14 C -0.20 -8.15 9.55 22.70 0.22 -7.94 16 15 C -0.09 -3.66 10.01 22.17 0.22 -3.44 16 16 C -0.21 -9.74 9.78 22.77 0.22 -9.52 16 17 C 0.07 3.60 5.57 -21.32 -0.12 3.48 16 18 C -0.49 -26.06 9.05 23.47 0.21 -25.85 16 19 H 0.09 4.29 7.91 -2.91 -0.02 4.27 16 20 C 0.03 1.53 5.14 85.25 0.44 1.97 16 21 N -0.82 -44.34 10.95 21.82 0.24 -44.10 16 22 Si 0.98 38.42 29.60 68.60 2.03 40.45 16 23 H -0.25 -9.43 7.11 99.48 0.71 -8.72 16 24 H -0.27 -10.35 7.11 99.48 0.71 -9.64 16 25 H -0.26 -9.88 7.11 99.48 0.71 -9.17 16 26 C -0.12 -6.57 8.23 23.01 0.19 -6.38 16 27 C -0.04 -0.74 9.53 22.51 0.21 -0.53 16 28 C -0.21 -3.05 9.01 22.33 0.20 -2.85 16 29 H 0.07 0.32 7.65 -2.39 -0.02 0.30 16 30 H 0.12 0.29 8.14 -2.39 -0.02 0.27 16 31 H 0.07 0.32 7.65 -2.39 -0.02 0.30 16 32 H 0.16 1.90 8.06 -2.91 -0.02 1.88 16 33 H 0.15 2.78 7.64 -2.91 -0.02 2.76 16 34 H 0.43 11.93 6.02 -213.33 -1.28 10.65 16 35 H 0.44 14.39 6.02 -213.32 -1.28 13.11 16 36 H 0.13 4.17 6.38 -2.91 -0.02 4.15 16 37 H 0.14 4.34 8.06 -2.91 -0.02 4.31 16 38 H 0.11 4.71 8.06 -2.91 -0.02 4.69 16 39 H 0.29 14.20 8.30 -92.71 -0.77 13.43 16 40 H 0.11 6.30 5.74 -2.91 -0.02 6.28 16 41 H 0.14 2.16 6.39 -2.91 -0.02 2.15 16 42 H 0.16 1.43 6.28 -2.91 -0.02 1.41 16 Total: -1.00 -70.03 364.86 2.19 -67.85 By element: Atomic # 1 Polarization: 43.89 SS G_CDS: -1.46 Total: 42.43 kcal Atomic # 6 Polarization: -22.57 SS G_CDS: 4.63 Total: -17.93 kcal Atomic # 7 Polarization: -78.17 SS G_CDS: -1.94 Total: -80.11 kcal Atomic # 8 Polarization: -51.61 SS G_CDS: -1.07 Total: -52.68 kcal Atomic # 14 Polarization: 38.42 SS G_CDS: 2.03 Total: 40.45 kcal Total: -70.03 2.19 -67.85 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000077925189.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.401 kcal (2) G-P(sol) polarization free energy of solvation -70.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.849 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds