Wall clock time and date at job start Sat Apr 11 2020 05:56:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34674 * 116.99975 * 2 1 4 4 O 1.21436 * 120.00026 * 0.02562 * 3 2 1 5 5 C 1.48062 * 120.00320 * 179.97438 * 3 2 1 6 6 C 1.39248 * 119.66136 * 179.97438 * 5 3 2 7 7 C 1.39844 * 118.88915 * 179.70249 * 6 5 3 8 8 C 1.47989 * 120.89140 * 180.26048 * 7 6 5 9 9 O 1.21570 * 119.99627 * 331.59533 * 8 7 6 10 10 N 1.34773 * 120.00368 * 151.60464 * 8 7 6 11 11 C 1.36787 * 119.99602 * 3.88647 * 10 8 7 12 12 H 1.07995 * 120.00182 * 318.45409 * 11 10 8 13 13 C 1.39114 * 119.99643 * 138.45102 * 11 10 8 14 14 N 1.31317 * 120.00231 * 343.58017 * 13 11 10 15 15 Si 1.86797 * 120.00073 * 163.57685 * 13 11 10 16 16 H 1.48508 * 109.47178 * 59.99967 * 15 13 11 17 17 H 1.48490 * 109.47429 * 180.02562 * 15 13 11 18 18 H 1.48505 * 109.47070 * 300.00192 * 15 13 11 19 19 C 1.46497 * 120.00439 * 183.89360 * 10 8 7 20 20 C 1.50697 * 109.47209 * 85.89420 * 19 10 8 21 21 C 1.38229 * 120.00295 * 270.25621 * 20 19 10 22 22 C 1.38233 * 119.99817 * 179.76816 * 21 20 19 23 23 C 1.38234 * 120.00439 * 0.48439 * 22 21 20 24 24 C 1.38243 * 119.99471 * 359.79084 * 23 22 21 25 25 C 1.38233 * 119.99490 * 90.52955 * 20 19 10 26 26 C 1.39903 * 118.21451 * 0.28072 * 7 6 5 27 27 C 1.38472 * 119.18399 * 359.97438 * 26 7 6 28 28 N 1.31471 * 121.04756 * 0.02650 * 27 26 7 29 29 H 1.08997 * 109.47593 * 59.99897 * 1 2 3 30 30 H 1.09008 * 109.46924 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47340 * 299.99383 * 1 2 3 32 32 H 1.08001 * 120.54863 * 359.97438 * 6 5 3 33 33 H 0.96998 * 120.00087 * 180.02562 * 14 13 11 34 34 H 1.09001 * 109.47124 * 205.89855 * 19 10 8 35 35 H 1.09003 * 109.46515 * 325.89580 * 19 10 8 36 36 H 1.08001 * 120.00307 * 359.97438 * 21 20 19 37 37 H 1.08005 * 119.99979 * 180.24843 * 22 21 20 38 38 H 1.07994 * 120.00422 * 179.76897 * 23 22 21 39 39 H 1.08002 * 119.99536 * 179.97438 * 24 23 22 40 40 H 1.07998 * 120.00312 * 0.02562 * 25 20 19 41 41 H 1.07993 * 120.40728 * 179.97438 * 26 7 6 42 42 H 1.07996 * 119.47299 * 180.02562 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0634 1.2000 0.0000 4 8 1.4020 2.2184 0.0005 5 6 3.5420 1.2775 0.0006 6 6 4.1667 2.5220 0.0000 7 6 5.5641 2.5765 0.0069 8 6 6.2738 3.8750 0.0124 9 8 5.7551 4.8533 -0.4894 10 7 7.4952 3.9731 0.5736 11 6 8.1128 2.8567 1.0669 12 1 7.5444 2.1269 1.6242 13 6 9.4731 2.6616 0.8508 14 7 10.0964 3.3521 -0.0761 15 14 10.4131 1.4172 1.8790 16 1 9.8221 0.0685 1.6865 17 1 11.8364 1.3995 1.4558 18 1 10.3282 1.7948 3.3128 19 6 8.1614 5.2753 0.6554 20 6 7.7111 5.9925 1.9019 21 6 6.6017 6.8161 1.8628 22 6 6.1859 7.4702 3.0074 23 6 6.8854 7.3087 4.1887 24 6 7.9983 6.4895 4.2264 25 6 8.4110 5.8312 3.0830 26 6 6.2730 1.3703 0.0081 27 6 5.5729 0.1756 0.0029 28 7 4.2583 0.1601 -0.0035 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0278 -0.0005 31 1 -0.3634 0.5137 0.8900 32 1 3.5818 3.4299 -0.0012 33 1 11.0448 3.2157 -0.2271 34 1 9.2411 5.1295 0.6900 35 1 7.9031 5.8711 -0.2201 36 1 6.0577 6.9460 0.9389 37 1 5.3166 8.1106 2.9779 38 1 6.5627 7.8226 5.0820 39 1 8.5451 6.3635 5.1492 40 1 9.2806 5.1915 3.1124 41 1 7.3529 1.3711 0.0129 42 1 6.1155 -0.7582 0.0042 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000081707264.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:08 Heat of formation + Delta-G solvation = -38.020061 kcal Electronic energy + Delta-G solvation = -28945.989562 eV Core-core repulsion = 24857.021360 eV Total energy + Delta-G solvation = -4088.968202 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.126 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.64260 -39.71192 -38.87357 -37.84975 -36.37445 -35.20338 -32.56192 -32.10621 -31.29871 -30.60566 -30.36095 -27.87572 -26.18844 -25.49531 -24.26767 -23.24172 -22.00703 -21.51196 -20.77572 -19.61194 -18.41810 -17.33293 -16.96800 -16.33569 -16.29538 -16.06335 -15.50282 -15.19979 -14.78720 -14.65899 -14.58236 -14.27272 -14.06041 -13.98709 -13.60354 -13.44280 -12.91260 -12.89052 -12.81136 -12.27174 -12.16117 -12.12562 -11.74451 -11.69787 -11.20822 -11.16927 -10.95621 -10.77114 -10.67405 -10.65051 -10.49678 -10.31795 -9.54205 -9.42610 -9.38651 -8.89096 -8.75961 -8.40731 -8.21081 -7.77105 -6.68790 -4.41823 0.82509 1.31705 1.84327 1.92083 2.56660 2.66362 2.94435 3.04830 3.06036 3.66754 3.83156 4.15423 4.28733 4.36231 4.57695 4.69481 5.06142 5.07433 5.13558 5.30531 5.36362 5.38640 5.40303 5.46151 5.50023 5.56126 5.76281 5.93811 5.99885 6.02289 6.08827 6.23110 6.32377 6.42036 6.51940 6.64446 6.69807 6.89433 6.94846 6.96391 7.00672 7.12566 7.32230 7.53015 7.62567 7.67269 8.02782 8.11494 8.71250 9.12850 9.57685 10.32060 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.009789 B = 0.004135 C = 0.003238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2859.604709 B = 6769.574432 C = 8645.643525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.337 6.337 3 C 0.529 3.471 4 O -0.503 6.503 5 C 0.060 3.940 6 C -0.062 4.062 7 C -0.062 4.062 8 C 0.511 3.489 9 O -0.587 6.587 10 N -0.414 5.414 11 C -0.354 4.354 12 H 0.096 0.904 13 C 0.050 3.950 14 N -0.847 5.847 15 Si 0.911 3.089 16 H -0.266 1.266 17 H -0.280 1.280 18 H -0.269 1.269 19 C 0.150 3.850 20 C -0.084 4.084 21 C -0.103 4.103 22 C -0.131 4.131 23 C -0.132 4.132 24 C -0.132 4.132 25 C -0.097 4.097 26 C -0.093 4.093 27 C 0.074 3.926 28 N -0.436 5.436 29 H 0.062 0.938 30 H 0.101 0.899 31 H 0.062 0.938 32 H 0.150 0.850 33 H 0.277 0.723 34 H 0.113 0.887 35 H 0.069 0.931 36 H 0.126 0.874 37 H 0.113 0.887 38 H 0.112 0.888 39 H 0.113 0.887 40 H 0.121 0.879 41 H 0.190 0.810 42 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.216 -3.051 3.837 7.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.252 6.252 3 C 0.373 3.627 4 O -0.390 6.390 5 C -0.075 4.075 6 C -0.084 4.084 7 C -0.073 4.073 8 C 0.299 3.701 9 O -0.472 6.472 10 N -0.130 5.130 11 C -0.481 4.481 12 H 0.113 0.887 13 C -0.159 4.159 14 N -0.481 5.481 15 Si 0.736 3.264 16 H -0.190 1.190 17 H -0.205 1.205 18 H -0.194 1.194 19 C 0.027 3.973 20 C -0.085 4.085 21 C -0.121 4.121 22 C -0.150 4.150 23 C -0.150 4.150 24 C -0.150 4.150 25 C -0.116 4.116 26 C -0.113 4.113 27 C -0.087 4.087 28 N -0.149 5.149 29 H 0.081 0.919 30 H 0.119 0.881 31 H 0.081 0.919 32 H 0.168 0.832 33 H 0.088 0.912 34 H 0.131 0.869 35 H 0.087 0.913 36 H 0.144 0.856 37 H 0.131 0.869 38 H 0.130 0.870 39 H 0.132 0.868 40 H 0.139 0.861 41 H 0.207 0.793 42 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -5.934 -3.005 3.478 7.506 hybrid contribution 0.769 0.153 0.652 1.020 sum -5.165 -2.851 4.130 7.202 Atomic orbital electron populations 1.23296 0.76650 1.03623 1.02484 1.86684 1.22751 1.32053 1.83687 1.20879 0.88007 0.81492 0.72354 1.90843 1.65994 1.36158 1.46008 1.19640 0.90212 0.90057 1.07618 1.22104 0.94436 0.98031 0.93817 1.20449 0.92557 0.95736 0.98572 1.18051 0.84060 0.86729 0.81216 1.90642 1.68837 1.38327 1.49395 1.43141 1.13973 1.06631 1.49260 1.19516 0.93292 1.01053 1.34255 0.88687 1.25452 0.97393 0.97945 0.95074 1.69822 1.11561 1.39779 1.26904 0.86240 0.78842 0.80820 0.80527 1.19033 1.20504 1.19369 1.20424 1.00425 0.83637 0.92773 1.20580 0.95155 0.96057 0.96726 1.21312 0.96079 0.96110 0.98617 1.21078 0.99898 1.00711 0.93266 1.21000 0.96491 0.99948 0.97599 1.21058 0.97525 0.98371 0.98074 1.21110 0.99959 0.98278 0.92228 1.24061 1.05733 0.91303 0.90223 1.22889 0.88774 0.98703 0.98291 1.67385 1.09061 1.30057 1.08359 0.91916 0.88055 0.91924 0.83220 0.91223 0.86929 0.91309 0.85583 0.86857 0.87027 0.86846 0.86126 0.79330 0.81800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 10.56 101.05 1.07 1.42 16 2 O -0.34 -5.05 10.38 -40.42 -0.42 -5.47 16 3 C 0.53 9.14 7.95 34.76 0.28 9.41 16 4 O -0.50 -9.35 16.11 -19.22 -0.31 -9.66 16 5 C 0.06 1.09 6.75 -83.07 -0.56 0.53 16 6 C -0.06 -1.21 9.21 -38.61 -0.36 -1.57 16 7 C -0.06 -1.27 5.63 -104.68 -0.59 -1.86 16 8 C 0.51 11.79 7.45 -12.27 -0.09 11.70 16 9 O -0.59 -14.61 15.57 5.30 0.08 -14.53 16 10 N -0.41 -9.38 2.48 -117.13 -0.29 -9.67 16 11 C -0.35 -7.70 6.12 -15.02 -0.09 -7.79 16 12 H 0.10 2.01 6.06 -52.49 -0.32 1.69 16 13 C 0.05 1.08 4.96 -17.45 -0.09 0.99 16 14 N -0.85 -19.35 11.50 55.50 0.64 -18.72 16 15 Si 0.91 16.75 29.58 -169.99 -5.03 11.72 16 16 H -0.27 -4.71 7.11 56.52 0.40 -4.31 16 17 H -0.28 -5.24 7.11 56.52 0.40 -4.84 16 18 H -0.27 -5.02 7.11 56.52 0.40 -4.62 16 19 C 0.15 3.27 5.06 -5.20 -0.03 3.25 16 20 C -0.08 -1.67 5.43 -104.63 -0.57 -2.24 16 21 C -0.10 -1.95 9.57 -39.59 -0.38 -2.33 16 22 C -0.13 -2.16 10.05 -39.58 -0.40 -2.56 16 23 C -0.13 -2.02 10.05 -39.58 -0.40 -2.42 16 24 C -0.13 -2.11 10.05 -39.58 -0.40 -2.51 16 25 C -0.10 -1.78 9.70 -39.58 -0.38 -2.16 16 26 C -0.09 -1.69 7.88 -38.87 -0.31 -2.00 16 27 C 0.07 1.18 11.17 -17.62 -0.20 0.98 16 28 N -0.44 -7.59 10.09 -9.87 -0.10 -7.69 16 29 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.10 0.73 8.14 -51.92 -0.42 0.31 16 31 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.15 2.97 7.55 -52.49 -0.40 2.57 16 33 H 0.28 6.02 8.31 -40.82 -0.34 5.68 16 34 H 0.11 2.54 5.63 -51.93 -0.29 2.25 16 35 H 0.07 1.56 7.44 -51.93 -0.39 1.17 16 36 H 0.13 2.51 7.37 -52.49 -0.39 2.12 16 37 H 0.11 1.59 8.06 -52.48 -0.42 1.17 16 38 H 0.11 1.39 8.06 -52.49 -0.42 0.96 16 39 H 0.11 1.51 8.06 -52.49 -0.42 1.09 16 40 H 0.12 2.19 8.06 -52.49 -0.42 1.77 16 41 H 0.19 3.53 5.11 -52.49 -0.27 3.26 16 42 H 0.16 2.03 8.06 -52.49 -0.42 1.60 16 LS Contribution 366.78 15.07 5.53 5.53 Total: -1.00 -27.40 366.78 -7.95 -35.35 By element: Atomic # 1 Polarization: 16.86 SS G_CDS: -4.56 Total: 12.29 kcal Atomic # 6 Polarization: 4.32 SS G_CDS: -3.49 Total: 0.84 kcal Atomic # 7 Polarization: -36.32 SS G_CDS: 0.25 Total: -36.07 kcal Atomic # 8 Polarization: -29.01 SS G_CDS: -0.65 Total: -29.66 kcal Atomic # 14 Polarization: 16.75 SS G_CDS: -5.03 Total: 11.72 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -27.40 -7.95 -35.35 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081707264.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.666 kcal (2) G-P(sol) polarization free energy of solvation -27.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.354 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds