Wall clock time and date at job start Sat Apr 11 2020 05:56:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34674 * 116.99975 * 2 1 4 4 O 1.21436 * 120.00026 * 0.02562 * 3 2 1 5 5 C 1.48062 * 120.00320 * 179.97438 * 3 2 1 6 6 C 1.39248 * 119.66136 * 179.97438 * 5 3 2 7 7 C 1.39844 * 118.88915 * 179.70249 * 6 5 3 8 8 C 1.47989 * 120.89140 * 180.26048 * 7 6 5 9 9 O 1.21570 * 119.99627 * 331.59533 * 8 7 6 10 10 N 1.34773 * 120.00368 * 151.60464 * 8 7 6 11 11 C 1.36787 * 119.99602 * 3.88647 * 10 8 7 12 12 H 1.07995 * 120.00182 * 318.45409 * 11 10 8 13 13 C 1.39114 * 119.99643 * 138.45102 * 11 10 8 14 14 N 1.31317 * 120.00231 * 343.58017 * 13 11 10 15 15 Si 1.86797 * 120.00073 * 163.57685 * 13 11 10 16 16 H 1.48508 * 109.47178 * 59.99967 * 15 13 11 17 17 H 1.48490 * 109.47429 * 180.02562 * 15 13 11 18 18 H 1.48505 * 109.47070 * 300.00192 * 15 13 11 19 19 C 1.46497 * 120.00439 * 183.89360 * 10 8 7 20 20 C 1.50697 * 109.47209 * 85.89420 * 19 10 8 21 21 C 1.38229 * 120.00295 * 270.25621 * 20 19 10 22 22 C 1.38233 * 119.99817 * 179.76816 * 21 20 19 23 23 C 1.38234 * 120.00439 * 0.48439 * 22 21 20 24 24 C 1.38243 * 119.99471 * 359.79084 * 23 22 21 25 25 C 1.38233 * 119.99490 * 90.52955 * 20 19 10 26 26 C 1.39903 * 118.21451 * 0.28072 * 7 6 5 27 27 C 1.38472 * 119.18399 * 359.97438 * 26 7 6 28 28 N 1.31471 * 121.04756 * 0.02650 * 27 26 7 29 29 H 1.08997 * 109.47593 * 59.99897 * 1 2 3 30 30 H 1.09008 * 109.46924 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47340 * 299.99383 * 1 2 3 32 32 H 1.08001 * 120.54863 * 359.97438 * 6 5 3 33 33 H 0.96998 * 120.00087 * 180.02562 * 14 13 11 34 34 H 1.09001 * 109.47124 * 205.89855 * 19 10 8 35 35 H 1.09003 * 109.46515 * 325.89580 * 19 10 8 36 36 H 1.08001 * 120.00307 * 359.97438 * 21 20 19 37 37 H 1.08005 * 119.99979 * 180.24843 * 22 21 20 38 38 H 1.07994 * 120.00422 * 179.76897 * 23 22 21 39 39 H 1.08002 * 119.99536 * 179.97438 * 24 23 22 40 40 H 1.07998 * 120.00312 * 0.02562 * 25 20 19 41 41 H 1.07993 * 120.40728 * 179.97438 * 26 7 6 42 42 H 1.07996 * 119.47299 * 180.02562 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0634 1.2000 0.0000 4 8 1.4020 2.2184 0.0005 5 6 3.5420 1.2775 0.0006 6 6 4.1667 2.5220 0.0000 7 6 5.5641 2.5765 0.0069 8 6 6.2738 3.8750 0.0124 9 8 5.7551 4.8533 -0.4894 10 7 7.4952 3.9731 0.5736 11 6 8.1128 2.8567 1.0669 12 1 7.5444 2.1269 1.6242 13 6 9.4731 2.6616 0.8508 14 7 10.0964 3.3521 -0.0761 15 14 10.4131 1.4172 1.8790 16 1 9.8221 0.0685 1.6865 17 1 11.8364 1.3995 1.4558 18 1 10.3282 1.7948 3.3128 19 6 8.1614 5.2753 0.6554 20 6 7.7111 5.9925 1.9019 21 6 6.6017 6.8161 1.8628 22 6 6.1859 7.4702 3.0074 23 6 6.8854 7.3087 4.1887 24 6 7.9983 6.4895 4.2264 25 6 8.4110 5.8312 3.0830 26 6 6.2730 1.3703 0.0081 27 6 5.5729 0.1756 0.0029 28 7 4.2583 0.1601 -0.0035 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0278 -0.0005 31 1 -0.3634 0.5137 0.8900 32 1 3.5818 3.4299 -0.0012 33 1 11.0448 3.2157 -0.2271 34 1 9.2411 5.1295 0.6900 35 1 7.9031 5.8711 -0.2201 36 1 6.0577 6.9460 0.9389 37 1 5.3166 8.1106 2.9779 38 1 6.5627 7.8226 5.0820 39 1 8.5451 6.3635 5.1492 40 1 9.2806 5.1915 3.1124 41 1 7.3529 1.3711 0.0129 42 1 6.1155 -0.7582 0.0042 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000081707264.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:07 Heat of formation + Delta-G solvation = -51.417809 kcal Electronic energy + Delta-G solvation = -28946.570531 eV Core-core repulsion = 24857.021360 eV Total energy + Delta-G solvation = -4089.549172 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.126 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.04127 -41.18997 -40.29824 -39.38588 -37.63401 -36.95119 -34.06169 -33.78951 -32.72756 -32.10027 -31.72496 -28.88211 -27.76996 -27.14422 -25.67219 -24.71353 -23.37922 -22.90877 -22.18831 -21.22508 -19.94860 -18.70267 -18.48033 -17.71467 -17.53732 -17.48711 -17.06211 -16.74852 -16.35291 -16.16005 -16.03397 -15.71708 -15.49606 -15.41295 -14.95485 -14.67188 -14.49907 -14.23813 -14.12829 -13.79949 -13.58071 -13.34499 -13.23244 -13.04059 -12.78520 -12.73221 -12.49957 -12.11976 -12.00840 -11.94016 -11.85523 -11.78087 -11.16853 -11.03864 -10.91977 -10.43012 -10.29091 -9.77752 -9.63227 -9.51987 -8.36405 -6.16008 -0.61677 -0.17959 0.45998 0.54529 1.19383 1.44918 1.49124 1.55589 1.62626 2.03336 2.27816 2.64782 2.77010 3.01446 3.06324 3.13060 3.76087 3.85493 3.92373 3.95528 4.05109 4.09586 4.21196 4.28333 4.33120 4.34226 4.46526 4.51155 4.59595 4.69548 4.70310 4.77772 4.88625 5.09209 5.10597 5.18893 5.21413 5.26639 5.37524 5.52128 5.61810 5.62659 5.81969 5.92273 6.17802 6.30796 6.37807 6.73401 6.99667 7.37481 7.84304 8.65874 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.009789 B = 0.004135 C = 0.003238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2859.604709 B = 6769.574432 C = 8645.643525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.339 6.339 3 C 0.532 3.468 4 O -0.523 6.523 5 C 0.060 3.940 6 C -0.072 4.072 7 C -0.081 4.081 8 C 0.493 3.507 9 O -0.621 6.621 10 N -0.417 5.417 11 C -0.363 4.363 12 H 0.104 0.896 13 C 0.022 3.978 14 N -0.879 5.879 15 Si 0.972 3.028 16 H -0.246 1.246 17 H -0.285 1.285 18 H -0.270 1.270 19 C 0.157 3.843 20 C -0.105 4.105 21 C -0.124 4.124 22 C -0.131 4.131 23 C -0.122 4.122 24 C -0.126 4.126 25 C -0.111 4.111 26 C -0.090 4.090 27 C 0.094 3.906 28 N -0.434 5.434 29 H 0.065 0.935 30 H 0.139 0.861 31 H 0.066 0.934 32 H 0.135 0.865 33 H 0.279 0.721 34 H 0.102 0.898 35 H 0.042 0.958 36 H 0.103 0.897 37 H 0.138 0.862 38 H 0.153 0.847 39 H 0.148 0.852 40 H 0.116 0.884 41 H 0.186 0.814 42 H 0.211 0.789 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.537 -5.181 6.308 9.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.254 6.254 3 C 0.376 3.624 4 O -0.413 6.413 5 C -0.075 4.075 6 C -0.094 4.094 7 C -0.092 4.092 8 C 0.283 3.717 9 O -0.509 6.509 10 N -0.132 5.132 11 C -0.490 4.490 12 H 0.121 0.879 13 C -0.184 4.184 14 N -0.514 5.514 15 Si 0.794 3.206 16 H -0.170 1.170 17 H -0.210 1.210 18 H -0.195 1.195 19 C 0.034 3.966 20 C -0.107 4.107 21 C -0.142 4.142 22 C -0.149 4.149 23 C -0.140 4.140 24 C -0.143 4.143 25 C -0.129 4.129 26 C -0.110 4.110 27 C -0.067 4.067 28 N -0.146 5.146 29 H 0.084 0.916 30 H 0.157 0.843 31 H 0.085 0.915 32 H 0.153 0.847 33 H 0.089 0.911 34 H 0.120 0.880 35 H 0.060 0.940 36 H 0.121 0.879 37 H 0.156 0.844 38 H 0.171 0.829 39 H 0.166 0.834 40 H 0.134 0.866 41 H 0.202 0.798 42 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges -6.272 -5.157 5.955 10.069 hybrid contribution 0.820 0.824 -0.119 1.169 sum -5.451 -4.333 5.836 9.085 Atomic orbital electron populations 1.23713 0.73955 1.06250 1.02896 1.86657 1.25334 1.30442 1.82946 1.20713 0.87642 0.81966 0.72057 1.90831 1.66327 1.37020 1.47079 1.19755 0.91112 0.89668 1.06956 1.21969 0.94037 0.98352 0.95022 1.20331 0.93013 0.95345 1.00511 1.18583 0.84482 0.87602 0.81067 1.90596 1.69668 1.39738 1.50943 1.43356 1.13928 1.07225 1.48665 1.19776 0.93729 1.01099 1.34375 0.87891 1.26154 0.97599 0.99286 0.95399 1.69926 1.11837 1.41331 1.28327 0.85298 0.77175 0.79516 0.78606 1.16982 1.21039 1.19465 1.20249 0.99614 0.83580 0.93168 1.20423 0.96463 0.97247 0.96526 1.21235 0.96335 0.97547 0.99127 1.21385 1.00624 1.00153 0.92706 1.21458 0.95340 0.98870 0.98304 1.21441 0.97608 0.97050 0.98224 1.21157 0.99977 0.99187 0.92612 1.24007 1.05456 0.91262 0.90320 1.23530 0.88278 0.99380 0.95487 1.67531 1.09558 1.29236 1.08295 0.91581 0.84318 0.91530 0.84715 0.91127 0.88042 0.93982 0.87905 0.84375 0.82907 0.83431 0.86581 0.79752 0.77237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.46 10.56 113.37 1.20 1.66 16 2 O -0.34 -9.57 10.38 -55.84 -0.58 -10.15 16 3 C 0.53 18.12 7.95 70.43 0.56 18.68 16 4 O -0.52 -19.62 16.11 20.04 0.32 -19.29 16 5 C 0.06 2.16 6.75 41.86 0.28 2.45 16 6 C -0.07 -2.91 9.21 22.90 0.21 -2.70 16 7 C -0.08 -3.44 5.63 -19.90 -0.11 -3.55 16 8 C 0.49 24.21 7.45 86.83 0.65 24.85 16 9 O -0.62 -33.53 15.57 -3.94 -0.06 -33.60 16 10 N -0.42 -19.90 2.48 -642.75 -1.59 -21.49 16 11 C -0.36 -16.08 6.12 84.13 0.51 -15.56 16 12 H 0.10 4.33 6.06 -2.91 -0.02 4.31 16 13 C 0.02 0.93 4.96 84.98 0.42 1.36 16 14 N -0.88 -41.33 11.50 21.69 0.25 -41.08 16 15 Si 0.97 33.39 29.58 68.60 2.03 35.42 16 16 H -0.25 -7.69 7.11 99.48 0.71 -6.98 16 17 H -0.28 -9.99 7.11 99.48 0.71 -9.28 16 18 H -0.27 -9.29 7.11 99.48 0.71 -8.59 16 19 C 0.16 7.36 5.06 85.63 0.43 7.79 16 20 C -0.11 -4.41 5.43 -19.87 -0.11 -4.51 16 21 C -0.12 -4.93 9.57 22.27 0.21 -4.72 16 22 C -0.13 -4.17 10.05 22.27 0.22 -3.95 16 23 C -0.12 -3.35 10.05 22.27 0.22 -3.13 16 24 C -0.13 -3.70 10.05 22.27 0.22 -3.48 16 25 C -0.11 -4.06 9.70 22.27 0.22 -3.84 16 26 C -0.09 -3.22 7.88 22.73 0.18 -3.04 16 27 C 0.09 2.75 11.17 84.80 0.95 3.69 16 28 N -0.43 -14.24 10.09 -185.15 -1.87 -16.11 16 29 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 30 H 0.14 1.53 8.14 -2.38 -0.02 1.51 16 31 H 0.07 1.20 8.14 -2.39 -0.02 1.19 16 32 H 0.13 5.75 7.55 -2.91 -0.02 5.72 16 33 H 0.28 12.38 8.31 -92.71 -0.77 11.61 16 34 H 0.10 4.91 5.63 -2.39 -0.01 4.90 16 35 H 0.04 2.12 7.44 -2.39 -0.02 2.10 16 36 H 0.10 4.49 7.37 -2.91 -0.02 4.46 16 37 H 0.14 3.64 8.06 -2.91 -0.02 3.62 16 38 H 0.15 3.00 8.06 -2.91 -0.02 2.98 16 39 H 0.15 3.33 8.06 -2.91 -0.02 3.31 16 40 H 0.12 4.27 8.06 -2.91 -0.02 4.24 16 41 H 0.19 6.80 5.11 -2.91 -0.01 6.79 16 42 H 0.21 4.20 8.06 -2.91 -0.02 4.18 16 Total: -1.00 -62.90 366.78 5.84 -57.06 By element: Atomic # 1 Polarization: 36.19 SS G_CDS: 1.07 Total: 37.25 kcal Atomic # 6 Polarization: 5.71 SS G_CDS: 6.27 Total: 11.98 kcal Atomic # 7 Polarization: -75.47 SS G_CDS: -3.21 Total: -78.68 kcal Atomic # 8 Polarization: -62.72 SS G_CDS: -0.32 Total: -63.04 kcal Atomic # 14 Polarization: 33.39 SS G_CDS: 2.03 Total: 35.42 kcal Total: -62.90 5.84 -57.06 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081707264.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.639 kcal (2) G-P(sol) polarization free energy of solvation -62.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.057 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds