Wall clock time and date at job start Sat Apr 11 2020 05:56:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35713 * 117.00054 * 2 1 4 4 C 1.39001 * 119.91366 * 180.02562 * 3 2 1 5 5 C 1.37690 * 120.09050 * 180.02562 * 4 3 2 6 6 C 1.39757 * 119.91296 * 359.97438 * 5 4 3 7 7 C 1.47554 * 120.09361 * 179.97438 * 6 5 4 8 8 O 1.21589 * 120.00088 * 0.02562 * 7 6 5 9 9 N 1.34776 * 120.00322 * 180.02562 * 7 6 5 10 10 C 1.39192 * 120.00136 * 185.40844 * 9 7 6 11 11 C 1.38858 * 120.17640 * 317.12906 * 10 9 7 12 12 C 1.38028 * 120.07802 * 180.32067 * 11 10 9 13 13 C 1.38589 * 120.41802 * 359.67735 * 12 11 10 14 14 C 1.37773 * 120.34115 * 359.97438 * 13 12 11 15 15 C 1.39751 * 119.92086 * 0.02641 * 14 13 12 16 16 C 1.47392 * 120.21124 * 180.02562 * 15 14 13 17 17 O 1.21634 * 120.00423 * 178.31918 * 16 15 14 18 18 N 1.34779 * 119.99765 * 358.31168 * 16 15 14 19 19 C 1.36893 * 119.99888 * 179.73028 * 18 16 15 20 20 H 1.08004 * 120.00272 * 0.27325 * 19 18 16 21 21 C 1.39028 * 120.00013 * 180.27902 * 19 18 16 22 22 N 1.31374 * 120.00041 * 359.97438 * 21 19 18 23 23 Si 1.86802 * 120.00001 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.47426 * 59.99499 * 23 21 19 25 25 H 1.48502 * 109.47000 * 179.97438 * 23 21 19 26 26 H 1.48494 * 109.47001 * 299.99170 * 23 21 19 27 27 C 1.39754 * 119.81748 * 0.26026 * 6 5 4 28 28 C 1.37703 * 119.90986 * 359.50184 * 27 6 5 29 29 H 1.08999 * 109.47386 * 59.99641 * 1 2 3 30 30 H 1.09007 * 109.47053 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.47013 * 299.99590 * 1 2 3 32 32 H 1.08003 * 119.95039 * 359.97438 * 4 3 2 33 33 H 1.08004 * 120.04586 * 179.97438 * 5 4 3 34 34 H 0.96999 * 119.99871 * 5.41184 * 9 7 6 35 35 H 1.08009 * 119.95739 * 0.02562 * 11 10 9 36 36 H 1.08002 * 119.79023 * 179.69896 * 12 11 10 37 37 H 1.07994 * 119.82777 * 180.02562 * 13 12 11 38 38 H 1.07997 * 120.04453 * 180.02562 * 14 13 12 39 39 H 0.97000 * 120.00077 * 359.97438 * 18 16 15 40 40 H 0.96998 * 120.00602 * 180.02562 * 22 21 19 41 41 H 1.08001 * 120.04601 * 179.74463 * 27 6 5 42 42 H 1.08003 * 119.95584 * 180.23284 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2092 0.0000 4 6 3.4333 1.2798 -0.0005 5 6 4.0622 2.5047 0.0000 6 6 3.3029 3.6780 0.0005 7 6 3.9727 4.9928 0.0017 8 8 5.1869 5.0565 0.0017 9 7 3.2387 6.1231 0.0027 10 6 3.8660 7.3605 -0.1098 11 6 5.0275 7.6218 0.6050 12 6 5.6443 8.8519 0.4969 13 6 5.1157 9.8318 -0.3282 14 6 3.9681 9.5886 -1.0507 15 6 3.3319 8.3482 -0.9521 16 6 2.1042 8.0810 -1.7226 17 8 1.5706 6.9899 -1.6575 18 7 1.5726 9.0458 -2.4992 19 6 0.4355 8.7958 -3.2192 20 1 -0.0383 7.8270 -3.1615 21 6 -0.1096 9.7892 -4.0248 22 7 0.4663 10.9679 -4.0948 23 14 -1.6610 9.4479 -5.0078 24 1 -2.7655 9.0909 -4.0816 25 1 -2.0350 10.6604 -5.7793 26 1 -1.4161 8.3213 -5.9437 27 6 1.9074 3.6026 0.0060 28 6 1.2861 2.3737 0.0005 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5137 0.8900 32 1 4.0194 0.3727 -0.0005 33 1 5.1409 2.5588 0.0000 34 1 2.2731 6.0743 0.0819 35 1 5.4460 6.8632 1.2499 36 1 6.5447 9.0518 1.0588 37 1 5.6063 10.7908 -0.4059 38 1 3.5605 10.3556 -1.6926 39 1 1.9978 9.9161 -2.5508 40 1 0.0859 11.6611 -4.6565 41 1 1.3170 4.5070 0.0106 42 1 0.2077 2.3146 0.0010 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000126840727.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:38 Heat of formation + Delta-G solvation = -67.410340 kcal Electronic energy + Delta-G solvation = -28275.949874 eV Core-core repulsion = 24185.707214 eV Total energy + Delta-G solvation = -4090.242660 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.126 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.96378 -41.09736 -40.19914 -38.92603 -38.01804 -36.36957 -35.57283 -33.51334 -32.43442 -31.92650 -31.72355 -30.24169 -28.28584 -27.21529 -25.01209 -24.52659 -23.86862 -22.91871 -21.52015 -21.28109 -20.12845 -19.51408 -18.72642 -18.44700 -18.02583 -17.08071 -16.87310 -16.75044 -16.44291 -16.30768 -15.87186 -15.77106 -15.51517 -15.43096 -15.15000 -14.93139 -14.70639 -14.41479 -14.23886 -13.74178 -13.64289 -13.55047 -13.46929 -12.94659 -12.86788 -12.84025 -12.62856 -12.33382 -12.13859 -12.08474 -11.89088 -11.58405 -11.34611 -11.07622 -10.36527 -10.17691 -10.13832 -9.89122 -9.45404 -9.13912 -8.55622 -5.99788 -0.31225 -0.00298 0.25095 0.39552 1.40510 1.41131 1.51719 1.69562 2.04795 2.16024 2.23781 2.25071 2.73431 2.87953 3.09153 3.28741 3.63921 3.65183 3.79941 3.90329 4.06509 4.11613 4.20527 4.26423 4.38144 4.40653 4.47883 4.51399 4.52701 4.59232 4.73181 4.88356 4.94953 5.02545 5.17146 5.23195 5.30312 5.33325 5.37549 5.50517 5.52462 5.56214 5.89403 6.01834 6.26906 6.41546 6.48866 6.99289 7.05722 7.42834 7.97632 8.61427 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.008509 B = 0.003606 C = 0.002585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3289.782998 B = 7763.530892 C =10830.197176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.321 6.321 3 C 0.155 3.845 4 C -0.163 4.163 5 C -0.021 4.021 6 C -0.194 4.194 7 C 0.559 3.441 8 O -0.561 6.561 9 N -0.650 5.650 10 C 0.166 3.834 11 C -0.131 4.131 12 C -0.082 4.082 13 C -0.125 4.125 14 C -0.091 4.091 15 C -0.154 4.154 16 C 0.468 3.532 17 O -0.624 6.624 18 N -0.550 5.550 19 C -0.334 4.334 20 H 0.088 0.912 21 C -0.010 4.010 22 N -0.912 5.912 23 Si 0.998 3.002 24 H -0.267 1.267 25 H -0.270 1.270 26 H -0.272 1.272 27 C -0.040 4.040 28 C -0.216 4.216 29 H 0.062 0.938 30 H 0.126 0.874 31 H 0.069 0.931 32 H 0.161 0.839 33 H 0.147 0.853 34 H 0.419 0.581 35 H 0.134 0.866 36 H 0.166 0.834 37 H 0.164 0.836 38 H 0.129 0.871 39 H 0.397 0.603 40 H 0.282 0.718 41 H 0.129 0.871 42 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.738 -12.412 10.338 16.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.234 6.234 3 C 0.108 3.892 4 C -0.181 4.181 5 C -0.040 4.040 6 C -0.197 4.197 7 C 0.351 3.649 8 O -0.442 6.442 9 N -0.297 5.297 10 C 0.069 3.931 11 C -0.151 4.151 12 C -0.101 4.101 13 C -0.143 4.143 14 C -0.111 4.111 15 C -0.159 4.159 16 C 0.258 3.742 17 O -0.514 6.514 18 N -0.184 5.184 19 C -0.463 4.463 20 H 0.106 0.894 21 C -0.211 4.211 22 N -0.551 5.551 23 Si 0.821 3.179 24 H -0.192 1.192 25 H -0.194 1.194 26 H -0.197 1.197 27 C -0.059 4.059 28 C -0.235 4.235 29 H 0.081 0.919 30 H 0.144 0.856 31 H 0.087 0.913 32 H 0.178 0.822 33 H 0.165 0.835 34 H 0.260 0.740 35 H 0.152 0.848 36 H 0.183 0.817 37 H 0.181 0.819 38 H 0.147 0.853 39 H 0.232 0.768 40 H 0.092 0.908 41 H 0.146 0.854 42 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 4.165 -13.119 10.224 17.146 hybrid contribution -1.395 0.748 -0.792 1.770 sum 2.770 -12.371 9.432 15.801 Atomic orbital electron populations 1.23453 0.76041 1.06055 1.02543 1.86031 1.23781 1.26090 1.87507 1.19447 0.92681 0.84614 0.92409 1.20595 0.91550 0.98796 1.07176 1.21143 1.00831 0.89821 0.92178 1.19714 0.94343 0.92534 1.13138 1.18640 0.86640 0.84660 0.74957 1.90700 1.14220 1.87891 1.51357 1.43387 1.12142 1.03635 1.70529 1.17851 0.95045 0.84996 0.95195 1.21239 0.95259 0.98693 0.99924 1.21542 0.99858 0.91285 0.97426 1.21418 0.95196 1.01137 0.96590 1.21413 0.96113 0.94553 0.99040 1.20109 0.98466 0.97099 1.00235 1.18203 0.86458 0.85212 0.84291 1.90416 1.65639 1.25021 1.70319 1.41853 1.24093 1.13618 1.38869 1.19767 1.03109 1.00394 1.23034 0.89380 1.26167 1.02426 0.94345 0.98158 1.69641 1.41665 1.04137 1.39667 0.84917 0.77098 0.77985 0.77943 1.19217 1.19394 1.19688 1.21276 0.93080 0.98628 0.92930 1.21396 1.01663 0.91191 1.09208 0.91893 0.85635 0.91258 0.82166 0.83511 0.73961 0.84812 0.81657 0.81855 0.85275 0.76781 0.90840 0.85368 0.82581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.15 9.81 113.37 1.11 1.27 16 2 O -0.32 -6.18 10.48 -90.34 -0.95 -7.13 16 3 C 0.16 3.49 6.70 22.64 0.15 3.64 16 4 C -0.16 -3.63 9.97 22.32 0.22 -3.41 16 5 C -0.02 -0.55 9.58 22.51 0.22 -0.34 16 6 C -0.19 -6.07 5.87 -20.09 -0.12 -6.19 16 7 C 0.56 20.64 7.58 86.70 0.66 21.30 16 8 O -0.56 -22.32 14.27 -4.00 -0.06 -22.38 16 9 N -0.65 -24.87 4.26 -305.74 -1.30 -26.17 16 10 C 0.17 6.42 6.16 38.64 0.24 6.65 16 11 C -0.13 -4.25 8.66 22.37 0.19 -4.06 16 12 C -0.08 -2.11 10.03 22.30 0.22 -1.88 16 13 C -0.13 -3.29 10.02 22.24 0.22 -3.07 16 14 C -0.09 -3.15 9.53 22.53 0.21 -2.93 16 15 C -0.15 -6.38 5.89 -19.98 -0.12 -6.49 16 16 C 0.47 23.34 7.71 86.65 0.67 24.01 16 17 O -0.62 -33.17 13.67 -4.14 -0.06 -33.23 16 18 N -0.55 -28.61 5.23 -310.00 -1.62 -30.23 16 19 C -0.33 -18.55 9.68 84.09 0.81 -17.74 16 20 H 0.09 5.11 7.15 -2.91 -0.02 5.09 16 21 C -0.01 -0.50 5.50 84.95 0.47 -0.04 16 22 N -0.91 -48.02 13.05 21.68 0.28 -47.74 16 23 Si 1.00 41.41 29.55 68.60 2.03 43.44 16 24 H -0.27 -10.83 7.11 99.48 0.71 -10.12 16 25 H -0.27 -10.54 7.11 99.48 0.71 -9.83 16 26 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 27 C -0.04 -1.15 9.53 22.51 0.21 -0.94 16 28 C -0.22 -5.05 9.01 22.33 0.20 -4.85 16 29 H 0.06 0.73 7.65 -2.39 -0.02 0.71 16 30 H 0.13 0.86 8.14 -2.38 -0.02 0.84 16 31 H 0.07 0.69 7.65 -2.39 -0.02 0.67 16 32 H 0.16 2.73 8.06 -2.91 -0.02 2.71 16 33 H 0.15 3.67 7.64 -2.91 -0.02 3.64 16 34 H 0.42 16.06 5.00 -92.71 -0.46 15.60 16 35 H 0.13 4.26 6.79 -2.91 -0.02 4.25 16 36 H 0.17 2.86 8.06 -2.91 -0.02 2.83 16 37 H 0.16 3.02 8.06 -2.91 -0.02 2.99 16 38 H 0.13 4.40 6.41 -2.91 -0.02 4.38 16 39 H 0.40 19.70 5.93 -92.71 -0.55 19.15 16 40 H 0.28 13.84 8.31 -92.71 -0.77 13.07 16 41 H 0.13 3.84 6.41 -2.91 -0.02 3.82 16 42 H 0.16 2.84 6.28 -2.91 -0.02 2.83 16 Total: -1.00 -70.39 360.59 4.00 -66.39 By element: Atomic # 1 Polarization: 52.03 SS G_CDS: 0.09 Total: 52.12 kcal Atomic # 6 Polarization: -0.66 SS G_CDS: 5.58 Total: 4.92 kcal Atomic # 7 Polarization: -101.51 SS G_CDS: -2.64 Total: -104.14 kcal Atomic # 8 Polarization: -61.67 SS G_CDS: -1.06 Total: -62.74 kcal Atomic # 14 Polarization: 41.41 SS G_CDS: 2.03 Total: 43.44 kcal Total: -70.39 4.00 -66.39 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126840727.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.017 kcal (2) G-P(sol) polarization free energy of solvation -70.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.393 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds