Wall clock time and date at job start Sat Apr 11 2020 05:56:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34227 * 117.00162 * 2 1 4 4 O 1.20824 * 119.99682 * 0.02562 * 3 2 1 5 5 C 1.50697 * 120.00106 * 179.97438 * 3 2 1 6 6 N 1.46503 * 109.47042 * 180.02562 * 5 3 2 7 7 C 1.36872 * 119.99877 * 280.28450 * 6 5 3 8 8 H 1.08009 * 120.00177 * 316.09963 * 7 6 5 9 9 C 1.39047 * 120.00404 * 136.10040 * 7 6 5 10 10 N 1.31368 * 119.99454 * 338.87438 * 9 7 6 11 11 Si 1.86793 * 120.00617 * 158.86679 * 9 7 6 12 12 H 1.48504 * 109.46876 * 60.00033 * 11 9 7 13 13 H 1.48503 * 109.47361 * 180.02562 * 11 9 7 14 14 H 1.48502 * 109.47349 * 300.00619 * 11 9 7 15 15 C 1.34774 * 119.99982 * 100.28833 * 6 5 3 16 16 O 1.21587 * 119.99998 * 186.67387 * 15 6 5 17 17 C 1.47738 * 120.00025 * 6.66790 * 15 6 5 18 18 C 1.39689 * 120.51012 * 321.98450 * 17 15 6 19 19 N 1.31688 * 120.81910 * 179.77037 * 18 17 15 20 20 C 1.31816 * 122.02256 * 0.49454 * 19 18 17 21 21 C 1.39421 * 120.92509 * 359.77050 * 20 19 18 22 22 C 1.48412 * 120.45995 * 179.97438 * 21 20 19 23 23 C 1.39333 * 120.11841 * 179.74914 * 22 21 20 24 24 C 1.38024 * 119.87587 * 179.74249 * 23 22 21 25 25 C 1.38315 * 120.11871 * 0.52968 * 24 23 22 26 26 C 1.38316 * 120.24790 * 359.72172 * 25 24 23 27 27 C 1.38023 * 120.11607 * 0.02562 * 26 25 24 28 28 C 1.39487 * 119.07585 * 359.97438 * 21 20 19 29 29 H 1.08993 * 109.47371 * 59.99539 * 1 2 3 30 30 H 1.09002 * 109.46987 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.46814 * 299.99611 * 1 2 3 32 32 H 1.09005 * 109.46874 * 60.00422 * 5 3 2 33 33 H 1.08999 * 109.47552 * 299.99831 * 5 3 2 34 34 H 0.97001 * 120.00174 * 185.05114 * 10 9 7 35 35 H 1.08003 * 119.59388 * 0.02562 * 18 17 15 36 36 H 1.07999 * 119.53632 * 179.74921 * 20 19 18 37 37 H 1.08002 * 120.05994 * 359.97438 * 23 22 21 38 38 H 1.07998 * 119.93804 * 180.27895 * 24 23 22 39 39 H 1.08005 * 119.87404 * 179.74626 * 25 24 23 40 40 H 1.07994 * 119.94353 * 179.97438 * 26 25 24 41 41 H 1.08005 * 120.05791 * 179.97438 * 27 26 25 42 42 H 1.07998 * 120.91803 * 179.97438 * 28 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2748 0.0006 6 7 3.9817 2.6797 0.0011 7 6 3.9732 3.3963 -1.1651 8 1 4.3589 2.9555 -2.0726 9 6 3.4682 4.6917 -1.1815 10 7 2.6418 5.0864 -0.2397 11 14 3.9650 5.8707 -2.5425 12 1 3.5577 5.3102 -3.8560 13 1 3.2949 7.1793 -2.3329 14 1 5.4377 6.0601 -2.5204 15 6 4.3722 3.2665 1.1498 16 8 4.6004 4.4605 1.1755 17 6 4.5230 2.4590 2.3777 18 6 3.6256 1.4272 2.6626 19 7 3.7569 0.7007 3.7531 20 6 4.7235 0.9148 4.6234 21 6 5.6596 1.9278 4.4198 22 6 6.7434 2.1601 5.4067 23 6 7.6782 3.1711 5.1935 24 6 8.6809 3.3863 6.1173 25 6 8.7653 2.5934 7.2474 26 6 7.8431 1.5850 7.4615 27 6 6.8332 1.3644 6.5469 28 6 5.5633 2.7198 3.2756 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8901 32 1 3.9564 0.7805 -0.8892 33 1 3.9558 0.7809 0.8908 34 1 2.2323 5.9642 -0.2905 35 1 2.8164 1.2199 1.9780 36 1 4.7911 0.2970 5.5067 37 1 7.6160 3.7876 4.3089 38 1 9.4033 4.1725 5.9552 39 1 9.5539 2.7626 7.9657 40 1 7.9138 0.9686 8.3454 41 1 6.1139 0.5765 6.7148 42 1 6.2720 3.5128 3.0884 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000131319614.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:42 Heat of formation + Delta-G solvation = -13.701152 kcal Electronic energy + Delta-G solvation = -29134.062985 eV Core-core repulsion = 25046.149330 eV Total energy + Delta-G solvation = -4087.913655 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.126 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.59366 -39.73931 -38.86760 -37.83465 -35.77156 -34.29585 -33.32141 -32.50727 -31.44771 -30.82484 -29.18174 -28.45515 -26.36915 -25.43248 -24.00594 -23.69518 -22.02247 -21.43125 -20.72390 -19.53624 -17.74340 -17.24525 -17.03808 -16.67834 -16.33483 -16.14355 -15.61756 -15.47576 -15.05280 -14.70331 -14.46401 -14.16412 -13.80458 -13.70656 -13.63015 -13.23845 -13.05029 -12.77722 -12.73597 -12.69878 -12.38397 -11.95442 -11.63482 -11.48643 -11.40005 -11.16040 -10.97969 -10.86734 -10.73108 -10.30827 -10.21950 -10.09237 -9.69745 -9.48399 -9.15876 -9.05816 -8.86088 -8.33733 -8.07129 -7.34911 -6.13390 -3.93866 0.57491 1.29184 1.30795 1.85203 2.93334 3.13895 3.29328 3.36291 3.38834 3.60489 3.99495 4.15915 4.36869 4.46095 4.63910 4.69974 4.80206 4.85219 4.98006 5.07222 5.16954 5.19056 5.31723 5.32781 5.43569 5.49080 5.50649 5.53500 5.61182 5.67219 5.77418 5.87009 5.93041 5.95550 5.97141 6.14194 6.29910 6.38186 6.44902 6.58418 6.78910 6.87786 6.97736 7.52713 8.08286 8.11809 8.52974 8.84210 8.94695 9.45830 10.01173 10.91454 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.011747 B = 0.003748 C = 0.002946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2382.953545 B = 7469.774139 C = 9500.605189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.375 6.375 3 C 0.416 3.584 4 O -0.445 6.445 5 C 0.094 3.906 6 N -0.418 5.418 7 C -0.364 4.364 8 H 0.086 0.914 9 C 0.080 3.920 10 N -0.791 5.791 11 Si 0.914 3.086 12 H -0.277 1.277 13 H -0.286 1.286 14 H -0.272 1.272 15 C 0.512 3.488 16 O -0.511 6.511 17 C -0.140 4.140 18 C 0.104 3.896 19 N -0.480 5.480 20 C 0.103 3.897 21 C -0.107 4.107 22 C -0.031 4.031 23 C -0.109 4.109 24 C -0.116 4.116 25 C -0.124 4.124 26 C -0.119 4.119 27 C -0.113 4.113 28 C -0.028 4.028 29 H 0.057 0.943 30 H 0.092 0.908 31 H 0.057 0.943 32 H 0.104 0.896 33 H 0.106 0.894 34 H 0.265 0.735 35 H 0.157 0.843 36 H 0.156 0.844 37 H 0.129 0.871 38 H 0.124 0.876 39 H 0.120 0.880 40 H 0.123 0.877 41 H 0.126 0.874 42 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.363 -10.245 10.426 15.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.293 6.293 3 C 0.254 3.746 4 O -0.326 6.326 5 C -0.032 4.032 6 N -0.139 5.139 7 C -0.490 4.490 8 H 0.104 0.896 9 C -0.135 4.135 10 N -0.420 5.420 11 Si 0.740 3.260 12 H -0.203 1.203 13 H -0.211 1.211 14 H -0.197 1.197 15 C 0.299 3.701 16 O -0.387 6.387 17 C -0.146 4.146 18 C -0.053 4.053 19 N -0.188 5.188 20 C -0.055 4.055 21 C -0.109 4.109 22 C -0.032 4.032 23 C -0.127 4.127 24 C -0.134 4.134 25 C -0.142 4.142 26 C -0.137 4.137 27 C -0.130 4.130 28 C -0.054 4.054 29 H 0.076 0.924 30 H 0.110 0.890 31 H 0.075 0.925 32 H 0.121 0.879 33 H 0.124 0.876 34 H 0.076 0.924 35 H 0.174 0.826 36 H 0.173 0.827 37 H 0.147 0.853 38 H 0.142 0.858 39 H 0.138 0.862 40 H 0.141 0.859 41 H 0.144 0.856 42 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 5.542 -9.745 10.685 15.487 hybrid contribution 0.222 1.277 -0.822 1.535 sum 5.764 -8.468 9.863 14.220 Atomic orbital electron populations 1.23086 0.77871 1.02558 1.02188 1.86544 1.22399 1.34996 1.85376 1.25011 0.93301 0.81559 0.74708 1.90838 1.65883 1.35344 1.40550 1.21769 0.86667 0.89868 1.04945 1.42925 1.55553 1.07252 1.08159 1.18952 1.45087 0.97109 0.87819 0.89637 1.25300 0.93266 0.98448 0.96482 1.69915 1.21257 1.19148 1.31715 0.86269 0.79286 0.79784 0.80645 1.20309 1.21122 1.19744 1.17576 0.82846 0.87386 0.82253 1.90655 1.51341 1.13614 1.83137 1.21574 0.96824 0.97810 0.98361 1.23356 0.97537 0.90793 0.93638 1.67618 1.21044 1.27351 1.02747 1.22853 0.89926 0.95024 0.97663 1.19657 0.97223 0.98479 0.95517 1.18655 0.94345 0.96225 0.94002 1.21359 0.94344 0.97316 0.99707 1.21107 0.98350 0.99593 0.94364 1.21200 0.99204 0.96036 0.97733 1.21058 0.95138 0.98267 0.99215 1.21209 0.98705 0.99381 0.93743 1.21672 0.96162 0.96641 0.90970 0.92391 0.88955 0.92451 0.87863 0.87618 0.92448 0.82616 0.82727 0.85345 0.85817 0.86157 0.85916 0.85600 0.83949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.52 10.56 101.05 1.07 1.59 16 2 O -0.38 -6.45 10.57 -39.25 -0.41 -6.87 16 3 C 0.42 8.61 5.95 36.00 0.21 8.83 16 4 O -0.45 -11.18 15.90 -18.75 -0.30 -11.48 16 5 C 0.09 1.85 5.47 -5.19 -0.03 1.82 16 6 N -0.42 -10.30 2.11 -117.21 -0.25 -10.55 16 7 C -0.36 -9.76 8.85 -15.00 -0.13 -9.90 16 8 H 0.09 2.16 7.92 -52.48 -0.42 1.75 16 9 C 0.08 2.24 4.29 -17.45 -0.07 2.17 16 10 N -0.79 -23.58 11.70 55.50 0.65 -22.93 16 11 Si 0.91 21.63 29.61 -169.99 -5.03 16.60 16 12 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 13 H -0.29 -6.78 7.11 56.52 0.40 -6.37 16 14 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 15 C 0.51 12.95 6.83 -12.38 -0.08 12.87 16 16 O -0.51 -14.84 14.39 5.29 0.08 -14.76 16 17 C -0.14 -2.90 5.38 -104.86 -0.56 -3.46 16 18 C 0.10 1.99 8.54 -17.07 -0.15 1.84 16 19 N -0.48 -8.26 10.33 -12.62 -0.13 -8.39 16 20 C 0.10 1.52 10.59 -17.12 -0.18 1.34 16 21 C -0.11 -1.62 5.89 -104.80 -0.62 -2.23 16 22 C -0.03 -0.41 5.88 -104.89 -0.62 -1.03 16 23 C -0.11 -1.36 9.44 -39.25 -0.37 -1.73 16 24 C -0.12 -1.21 10.03 -39.63 -0.40 -1.61 16 25 C -0.12 -1.16 10.04 -39.52 -0.40 -1.55 16 26 C -0.12 -1.11 10.03 -39.63 -0.40 -1.51 16 27 C -0.11 -1.21 9.44 -39.25 -0.37 -1.58 16 28 C -0.03 -0.51 9.14 -38.51 -0.35 -0.86 16 29 H 0.06 0.83 8.13 -51.93 -0.42 0.41 16 30 H 0.09 0.95 8.14 -51.93 -0.42 0.52 16 31 H 0.06 0.82 8.13 -51.93 -0.42 0.40 16 32 H 0.10 1.77 8.12 -51.93 -0.42 1.35 16 33 H 0.11 1.87 4.37 -51.93 -0.23 1.64 16 34 H 0.27 7.63 8.32 -40.82 -0.34 7.29 16 35 H 0.16 3.09 4.03 -52.48 -0.21 2.87 16 36 H 0.16 1.72 6.21 -52.49 -0.33 1.39 16 37 H 0.13 1.58 6.27 -52.49 -0.33 1.25 16 38 H 0.12 1.04 8.06 -52.49 -0.42 0.62 16 39 H 0.12 0.83 8.06 -52.48 -0.42 0.41 16 40 H 0.12 0.84 8.06 -52.49 -0.42 0.42 16 41 H 0.13 1.10 6.23 -52.48 -0.33 0.77 16 42 H 0.14 2.46 6.32 -52.49 -0.33 2.12 16 LS Contribution 358.64 15.07 5.40 5.40 Total: -1.00 -35.34 358.64 -7.70 -43.04 By element: Atomic # 1 Polarization: 9.19 SS G_CDS: -4.26 Total: 4.93 kcal Atomic # 6 Polarization: 8.45 SS G_CDS: -3.45 Total: 5.00 kcal Atomic # 7 Polarization: -42.14 SS G_CDS: 0.27 Total: -41.87 kcal Atomic # 8 Polarization: -32.47 SS G_CDS: -0.64 Total: -33.11 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.03 Total: 16.60 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -35.34 -7.70 -43.04 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000131319614.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.337 kcal (2) G-P(sol) polarization free energy of solvation -35.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.038 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds