Wall clock time and date at job start Sat Apr 11 2020 05:56:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34227 * 117.00162 * 2 1 4 4 O 1.20824 * 119.99682 * 0.02562 * 3 2 1 5 5 C 1.50697 * 120.00106 * 179.97438 * 3 2 1 6 6 N 1.46503 * 109.47042 * 180.02562 * 5 3 2 7 7 C 1.36872 * 119.99877 * 280.28450 * 6 5 3 8 8 H 1.08009 * 120.00177 * 316.09963 * 7 6 5 9 9 C 1.39047 * 120.00404 * 136.10040 * 7 6 5 10 10 N 1.31368 * 119.99454 * 338.87438 * 9 7 6 11 11 Si 1.86793 * 120.00617 * 158.86679 * 9 7 6 12 12 H 1.48504 * 109.46876 * 60.00033 * 11 9 7 13 13 H 1.48503 * 109.47361 * 180.02562 * 11 9 7 14 14 H 1.48502 * 109.47349 * 300.00619 * 11 9 7 15 15 C 1.34774 * 119.99982 * 100.28833 * 6 5 3 16 16 O 1.21587 * 119.99998 * 186.67387 * 15 6 5 17 17 C 1.47738 * 120.00025 * 6.66790 * 15 6 5 18 18 C 1.39689 * 120.51012 * 321.98450 * 17 15 6 19 19 N 1.31688 * 120.81910 * 179.77037 * 18 17 15 20 20 C 1.31816 * 122.02256 * 0.49454 * 19 18 17 21 21 C 1.39421 * 120.92509 * 359.77050 * 20 19 18 22 22 C 1.48412 * 120.45995 * 179.97438 * 21 20 19 23 23 C 1.39333 * 120.11841 * 179.74914 * 22 21 20 24 24 C 1.38024 * 119.87587 * 179.74249 * 23 22 21 25 25 C 1.38315 * 120.11871 * 0.52968 * 24 23 22 26 26 C 1.38316 * 120.24790 * 359.72172 * 25 24 23 27 27 C 1.38023 * 120.11607 * 0.02562 * 26 25 24 28 28 C 1.39487 * 119.07585 * 359.97438 * 21 20 19 29 29 H 1.08993 * 109.47371 * 59.99539 * 1 2 3 30 30 H 1.09002 * 109.46987 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.46814 * 299.99611 * 1 2 3 32 32 H 1.09005 * 109.46874 * 60.00422 * 5 3 2 33 33 H 1.08999 * 109.47552 * 299.99831 * 5 3 2 34 34 H 0.97001 * 120.00174 * 185.05114 * 10 9 7 35 35 H 1.08003 * 119.59388 * 0.02562 * 18 17 15 36 36 H 1.07999 * 119.53632 * 179.74921 * 20 19 18 37 37 H 1.08002 * 120.05994 * 359.97438 * 23 22 21 38 38 H 1.07998 * 119.93804 * 180.27895 * 24 23 22 39 39 H 1.08005 * 119.87404 * 179.74626 * 25 24 23 40 40 H 1.07994 * 119.94353 * 179.97438 * 26 25 24 41 41 H 1.08005 * 120.05791 * 179.97438 * 27 26 25 42 42 H 1.07998 * 120.91803 * 179.97438 * 28 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2748 0.0006 6 7 3.9817 2.6797 0.0011 7 6 3.9732 3.3963 -1.1651 8 1 4.3589 2.9555 -2.0726 9 6 3.4682 4.6917 -1.1815 10 7 2.6418 5.0864 -0.2397 11 14 3.9650 5.8707 -2.5425 12 1 3.5577 5.3102 -3.8560 13 1 3.2949 7.1793 -2.3329 14 1 5.4377 6.0601 -2.5204 15 6 4.3722 3.2665 1.1498 16 8 4.6004 4.4605 1.1755 17 6 4.5230 2.4590 2.3777 18 6 3.6256 1.4272 2.6626 19 7 3.7569 0.7007 3.7531 20 6 4.7235 0.9148 4.6234 21 6 5.6596 1.9278 4.4198 22 6 6.7434 2.1601 5.4067 23 6 7.6782 3.1711 5.1935 24 6 8.6809 3.3863 6.1173 25 6 8.7653 2.5934 7.2474 26 6 7.8431 1.5850 7.4615 27 6 6.8332 1.3644 6.5469 28 6 5.5633 2.7198 3.2756 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8901 32 1 3.9564 0.7805 -0.8892 33 1 3.9558 0.7809 0.8908 34 1 2.2323 5.9642 -0.2905 35 1 2.8164 1.2199 1.9780 36 1 4.7911 0.2970 5.5067 37 1 7.6160 3.7876 4.3089 38 1 9.4033 4.1725 5.9552 39 1 9.5539 2.7626 7.9657 40 1 7.9138 0.9686 8.3454 41 1 6.1139 0.5765 6.7148 42 1 6.2720 3.5128 3.0884 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000131319614.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:41 Heat of formation + Delta-G solvation = -35.573266 kcal Electronic energy + Delta-G solvation = -29135.011431 eV Core-core repulsion = 25046.149330 eV Total energy + Delta-G solvation = -4088.862101 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.126 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.08192 -41.17257 -40.08238 -39.35324 -37.40121 -36.16475 -34.56040 -34.26099 -32.92228 -31.78268 -30.44139 -29.87245 -27.82918 -27.13987 -25.21287 -25.14525 -23.18416 -22.52174 -22.21895 -21.20243 -19.21303 -18.66721 -18.64303 -18.26063 -17.67600 -17.46955 -17.05727 -16.86380 -16.63501 -16.16997 -15.89147 -15.44955 -15.20197 -14.91856 -14.77234 -14.64415 -14.55746 -14.20084 -14.08068 -13.88816 -13.74211 -13.38127 -13.35200 -12.91272 -12.78698 -12.73155 -12.66377 -12.25134 -12.18192 -11.87593 -11.67167 -11.44416 -11.26451 -11.01497 -10.80743 -10.57110 -10.16907 -9.85492 -9.34288 -9.15276 -8.19366 -6.03289 -0.59181 -0.10040 0.50341 0.77965 1.30828 1.37129 1.45816 1.49154 1.64340 2.27127 2.33126 2.68055 2.83942 3.04825 3.21856 3.25541 3.53294 3.67469 3.73574 3.75769 3.96691 4.04002 4.08656 4.12930 4.28442 4.33787 4.35892 4.39118 4.42168 4.47120 4.60576 4.61694 4.72186 4.90974 4.95630 5.06044 5.16549 5.41496 5.45205 5.45475 5.58584 5.61932 5.64304 6.07713 6.08679 6.72803 6.84150 6.94227 7.02750 7.47237 8.08162 8.86078 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.011747 B = 0.003748 C = 0.002946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2382.953545 B = 7469.774139 C = 9500.605189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.364 6.364 3 C 0.426 3.574 4 O -0.497 6.497 5 C 0.092 3.908 6 N -0.432 5.432 7 C -0.380 4.380 8 H 0.096 0.904 9 C 0.030 3.970 10 N -0.836 5.836 11 Si 0.973 3.027 12 H -0.257 1.257 13 H -0.291 1.291 14 H -0.273 1.273 15 C 0.505 3.495 16 O -0.564 6.564 17 C -0.163 4.163 18 C 0.099 3.901 19 N -0.480 5.480 20 C 0.116 3.884 21 C -0.088 4.088 22 C -0.060 4.060 23 C -0.128 4.128 24 C -0.126 4.126 25 C -0.116 4.116 26 C -0.118 4.118 27 C -0.109 4.109 28 C -0.038 4.038 29 H 0.051 0.949 30 H 0.140 0.860 31 H 0.051 0.949 32 H 0.131 0.869 33 H 0.129 0.871 34 H 0.256 0.744 35 H 0.147 0.853 36 H 0.203 0.797 37 H 0.114 0.886 38 H 0.139 0.861 39 H 0.150 0.850 40 H 0.156 0.844 41 H 0.150 0.850 42 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.825 -13.204 12.906 20.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.281 6.281 3 C 0.267 3.733 4 O -0.382 6.382 5 C -0.033 4.033 6 N -0.152 5.152 7 C -0.507 4.507 8 H 0.114 0.886 9 C -0.181 4.181 10 N -0.468 5.468 11 Si 0.797 3.203 12 H -0.181 1.181 13 H -0.217 1.217 14 H -0.198 1.198 15 C 0.294 3.706 16 O -0.445 6.445 17 C -0.169 4.169 18 C -0.058 4.058 19 N -0.188 5.188 20 C -0.042 4.042 21 C -0.090 4.090 22 C -0.061 4.061 23 C -0.146 4.146 24 C -0.144 4.144 25 C -0.134 4.134 26 C -0.136 4.136 27 C -0.127 4.127 28 C -0.064 4.064 29 H 0.070 0.930 30 H 0.158 0.842 31 H 0.070 0.930 32 H 0.149 0.851 33 H 0.147 0.853 34 H 0.065 0.935 35 H 0.164 0.836 36 H 0.219 0.781 37 H 0.132 0.868 38 H 0.157 0.843 39 H 0.168 0.832 40 H 0.174 0.826 41 H 0.168 0.832 42 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 7.002 -12.783 13.136 19.621 hybrid contribution -0.096 2.005 -1.324 2.405 sum 6.907 -10.778 11.812 17.418 Atomic orbital electron populations 1.23449 0.75677 1.05474 1.01688 1.86510 1.24372 1.32694 1.84506 1.24960 0.93504 0.81659 0.73211 1.90835 1.66954 1.37198 1.43246 1.21914 0.86588 0.87427 1.07393 1.43026 1.55725 1.08821 1.07587 1.19324 1.44717 0.97761 0.88902 0.88634 1.26173 0.93060 1.00182 0.98647 1.70081 1.23508 1.18917 1.34303 0.85345 0.78520 0.77509 0.78889 1.18123 1.21688 1.19821 1.18265 0.81438 0.87252 0.83657 1.90594 1.53486 1.15987 1.84431 1.21213 0.99173 0.98839 0.97676 1.23085 0.97112 0.90931 0.94624 1.67696 1.21861 1.26894 1.02342 1.23601 0.88154 0.94502 0.97929 1.19882 0.97568 0.97099 0.94457 1.18646 0.94443 0.98067 0.94949 1.21436 0.95468 0.97627 1.00110 1.21360 0.98096 1.00427 0.94475 1.21636 0.99500 0.94946 0.97276 1.21487 0.94100 0.98212 0.99762 1.21513 0.99428 0.99061 0.92655 1.21733 0.95639 0.97283 0.91775 0.92970 0.84206 0.93045 0.85098 0.85347 0.93498 0.83639 0.78100 0.86824 0.84306 0.83214 0.82599 0.83197 0.84581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.82 10.56 113.37 1.20 2.02 16 2 O -0.36 -12.18 10.57 -51.39 -0.54 -12.72 16 3 C 0.43 17.93 5.95 71.23 0.42 18.35 16 4 O -0.50 -26.04 15.90 21.97 0.35 -25.69 16 5 C 0.09 3.68 5.47 85.63 0.47 4.15 16 6 N -0.43 -22.17 2.11 -642.99 -1.36 -23.52 16 7 C -0.38 -21.21 8.85 84.10 0.74 -20.47 16 8 H 0.10 4.94 7.92 -2.91 -0.02 4.92 16 9 C 0.03 1.72 4.29 84.96 0.36 2.09 16 10 N -0.84 -52.98 11.70 21.68 0.25 -52.73 16 11 Si 0.97 46.26 29.61 68.60 2.03 48.29 16 12 H -0.26 -11.20 7.11 99.48 0.71 -10.49 16 13 H -0.29 -13.90 7.11 99.48 0.71 -13.19 16 14 H -0.27 -12.82 7.11 99.48 0.71 -12.11 16 15 C 0.50 27.03 6.83 86.76 0.59 27.62 16 16 O -0.56 -35.12 14.39 -3.99 -0.06 -35.18 16 17 C -0.16 -7.04 5.38 -20.02 -0.11 -7.14 16 18 C 0.10 3.81 8.54 85.07 0.73 4.54 16 19 N -0.48 -15.71 10.33 -193.85 -2.00 -17.72 16 20 C 0.12 3.09 10.59 84.98 0.90 3.99 16 21 C -0.09 -2.57 5.89 -19.98 -0.12 -2.69 16 22 C -0.06 -1.45 5.88 -20.04 -0.12 -1.57 16 23 C -0.13 -3.11 9.44 22.48 0.21 -2.90 16 24 C -0.13 -2.36 10.03 22.24 0.22 -2.14 16 25 C -0.12 -1.70 10.04 22.31 0.22 -1.47 16 26 C -0.12 -1.64 10.03 22.24 0.22 -1.42 16 27 C -0.11 -1.89 9.44 22.48 0.21 -1.68 16 28 C -0.04 -1.41 9.14 22.97 0.21 -1.20 16 29 H 0.05 1.48 8.13 -2.39 -0.02 1.46 16 30 H 0.14 2.43 8.14 -2.39 -0.02 2.41 16 31 H 0.05 1.46 8.13 -2.39 -0.02 1.44 16 32 H 0.13 4.42 8.12 -2.38 -0.02 4.41 16 33 H 0.13 4.56 4.37 -2.39 -0.01 4.55 16 34 H 0.26 15.77 8.32 -92.71 -0.77 15.00 16 35 H 0.15 5.88 4.03 -2.91 -0.01 5.87 16 36 H 0.20 3.41 6.21 -2.91 -0.02 3.39 16 37 H 0.11 2.98 6.27 -2.91 -0.02 2.96 16 38 H 0.14 2.08 8.06 -2.91 -0.02 2.06 16 39 H 0.15 1.32 8.06 -2.91 -0.02 1.29 16 40 H 0.16 1.17 8.06 -2.91 -0.02 1.15 16 41 H 0.15 1.78 6.23 -2.91 -0.02 1.76 16 42 H 0.14 5.08 6.32 -2.91 -0.02 5.07 16 Total: -1.00 -83.41 358.64 6.14 -77.27 By element: Atomic # 1 Polarization: 20.83 SS G_CDS: 1.08 Total: 21.92 kcal Atomic # 6 Polarization: 13.70 SS G_CDS: 6.38 Total: 20.08 kcal Atomic # 7 Polarization: -90.86 SS G_CDS: -3.11 Total: -93.97 kcal Atomic # 8 Polarization: -73.34 SS G_CDS: -0.25 Total: -73.59 kcal Atomic # 14 Polarization: 46.26 SS G_CDS: 2.03 Total: 48.29 kcal Total: -83.41 6.14 -77.27 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000131319614.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.696 kcal (2) G-P(sol) polarization free energy of solvation -83.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.269 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds