Wall clock time and date at job start Sat Apr 11 2020 05:55:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86795 * 119.99992 * 2 1 4 4 H 1.48497 * 109.47462 * 274.98515 * 3 2 1 5 5 H 1.48507 * 109.47207 * 34.98882 * 3 2 1 6 6 H 1.48499 * 109.47100 * 154.98608 * 3 2 1 7 7 C 1.38813 * 120.00068 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00320 * 174.94099 * 7 2 1 9 9 N 1.36942 * 119.99957 * 355.20803 * 7 2 1 10 10 C 1.47222 * 135.96491 * 5.74017 * 9 7 2 11 11 C 1.52912 * 87.68027 * 153.66482 * 10 9 7 12 12 C 1.47218 * 135.96588 * 186.10636 * 9 7 2 13 13 C 1.53316 * 115.72956 * 270.11806 * 11 10 9 14 14 C 1.55031 * 103.78875 * 229.63706 * 13 11 10 15 15 H 1.09004 * 110.86410 * 139.22328 * 14 13 11 16 16 N 1.46500 * 110.87356 * 262.69704 * 14 13 11 17 17 C 1.34771 * 119.99772 * 204.99883 * 16 14 13 18 18 O 1.21282 * 120.00206 * 0.02562 * 17 16 14 19 19 C 1.50706 * 119.99946 * 180.02562 * 17 16 14 20 20 C 1.52997 * 109.47182 * 179.97438 * 19 17 16 21 21 F 1.39896 * 109.47232 * 300.00143 * 20 19 17 22 22 F 1.39899 * 109.46937 * 60.00247 * 20 19 17 23 23 C 1.52993 * 109.46970 * 179.97438 * 20 19 17 24 24 F 1.39899 * 109.47418 * 180.02562 * 23 20 19 25 25 F 1.39905 * 109.47444 * 300.00300 * 23 20 19 26 26 C 1.55062 * 102.12973 * 20.85899 * 14 13 11 27 27 O 1.42844 * 115.81415 * 141.74210 * 11 10 9 28 28 H 0.97002 * 120.00427 * 0.02562 * 1 2 3 29 29 H 1.09001 * 113.49875 * 268.34789 * 10 9 7 30 30 H 1.09000 * 113.49861 * 38.89234 * 10 9 7 31 31 H 1.09005 * 113.50023 * 321.10359 * 12 9 7 32 32 H 1.09000 * 113.50083 * 91.59318 * 12 9 7 33 33 H 1.08995 * 110.56557 * 348.21730 * 13 11 10 34 34 H 1.09007 * 110.56059 * 111.06735 * 13 11 10 35 35 H 0.96995 * 119.99515 * 24.99796 * 16 14 13 36 36 H 1.09000 * 109.46597 * 300.00324 * 19 17 16 37 37 H 1.09002 * 109.46522 * 59.99854 * 19 17 16 38 38 H 1.09000 * 109.47501 * 60.00005 * 23 20 19 39 39 H 1.08998 * 110.58246 * 82.02402 * 26 14 13 40 40 H 1.08990 * 110.58270 * 204.93513 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.3923 2.1073 -1.3947 5 1 1.5042 2.6199 0.8029 6 1 3.5964 1.4120 0.5920 7 6 2.0102 -1.2021 -0.0005 8 1 3.0871 -1.2040 -0.0830 9 7 1.3291 -2.3861 0.0980 10 6 -0.0850 -2.7954 0.1149 11 6 0.3648 -4.1494 -0.4352 12 6 1.6902 -3.8062 0.2399 13 6 0.4109 -4.2648 -1.9633 14 6 -0.3631 -5.5752 -2.2584 15 1 -1.0058 -5.4584 -3.1310 16 7 0.5607 -6.6976 -2.4401 17 6 0.1876 -7.7657 -3.1724 18 8 -0.9127 -7.7975 -3.6814 19 6 1.1378 -8.9206 -3.3588 20 6 0.4729 -9.9935 -4.2235 21 9 -0.6916 -10.4448 -3.5932 22 9 0.1476 -9.4512 -5.4714 23 6 1.4377 -11.1656 -4.4132 24 9 0.8301 -12.1465 -5.2043 25 9 2.6021 -10.7139 -5.0438 26 6 -1.2036 -5.7549 -0.9678 27 8 -0.3231 -5.2900 0.0808 28 1 -0.4851 0.8400 -0.0004 29 1 -0.5089 -2.8526 1.1175 30 1 -0.7095 -2.2295 -0.5763 31 1 2.5635 -4.0933 -0.3459 32 1 1.7499 -4.1380 1.2765 33 1 -0.0871 -3.4133 -2.4268 34 1 1.4413 -4.3425 -2.3104 35 1 1.4409 -6.6719 -2.0333 36 1 2.0453 -8.5687 -3.8495 37 1 1.3909 -9.3433 -2.3865 38 1 1.6917 -11.5882 -3.4411 39 1 -2.1055 -5.1442 -1.0097 40 1 -1.4568 -6.8044 -0.8183 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733800424.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:07 Heat of formation + Delta-G solvation = -211.788316 kcal Electronic energy + Delta-G solvation = -30260.858353 eV Core-core repulsion = 25191.729030 eV Total energy + Delta-G solvation = -5069.129324 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.120 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -50.26284 -49.01107 -47.89334 -47.39035 -40.50514 -39.30965 -36.47958 -34.48674 -33.33505 -32.18532 -30.57526 -28.42412 -27.80393 -25.88294 -24.82092 -23.29253 -22.20616 -21.63343 -20.71379 -18.97946 -18.92101 -18.85701 -18.24317 -17.19403 -17.04905 -16.98544 -16.76455 -16.22838 -15.57090 -15.31640 -15.08859 -14.92155 -14.65919 -14.60007 -14.33072 -14.16146 -14.10715 -13.80310 -13.77131 -13.71340 -13.35017 -13.12036 -12.71860 -12.64001 -12.49032 -12.13845 -11.50217 -11.49251 -11.34475 -11.14178 -10.99728 -10.87555 -10.79684 -10.67711 -10.17643 -10.10894 -9.62811 -9.31025 -8.88835 -8.71523 -6.98684 -5.87120 -3.19808 2.07026 2.25342 2.75615 3.07669 3.25038 3.33610 3.38991 3.41311 3.41402 3.51212 4.11538 4.14496 4.23562 4.37789 4.43487 4.64988 4.70517 4.79740 4.95872 5.10814 5.17824 5.26565 5.45731 5.51238 5.74273 5.82398 6.04486 6.19821 6.28126 6.38383 6.49250 6.55611 6.88601 7.11426 7.19992 7.41455 7.54771 7.86575 7.88097 8.93626 9.60309 10.52602 11.30810 Molecular weight = 340.12amu Principal moments of inertia in cm(-1) A = 0.026390 B = 0.002242 C = 0.002172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1060.762708 B =12488.070611 C =12888.381948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.005 4.005 3 Si 0.913 3.087 4 H -0.288 1.288 5 H -0.289 1.289 6 H -0.280 1.280 7 C -0.220 4.220 8 H 0.083 0.917 9 N -0.602 5.602 10 C 0.151 3.849 11 C 0.041 3.959 12 C 0.128 3.872 13 C -0.114 4.114 14 C 0.107 3.893 15 H 0.107 0.893 16 N -0.707 5.707 17 C 0.517 3.483 18 O -0.523 6.523 19 C -0.195 4.195 20 C 0.272 3.728 21 F -0.167 7.167 22 F -0.169 7.169 23 C 0.236 3.764 24 F -0.182 7.182 25 F -0.180 7.180 26 C 0.041 3.959 27 O -0.362 6.362 28 H 0.255 0.745 29 H 0.034 0.966 30 H 0.070 0.930 31 H 0.043 0.957 32 H 0.041 0.959 33 H 0.097 0.903 34 H 0.083 0.917 35 H 0.405 0.595 36 H 0.136 0.864 37 H 0.134 0.866 38 H 0.145 0.855 39 H 0.072 0.928 40 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.411 -22.615 -6.851 23.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.202 4.202 3 Si 0.742 3.258 4 H -0.215 1.215 5 H -0.215 1.215 6 H -0.205 1.205 7 C -0.347 4.347 8 H 0.101 0.899 9 N -0.330 5.330 10 C 0.024 3.976 11 C 0.000 4.000 12 C 0.002 3.998 13 C -0.152 4.152 14 C 0.002 3.998 15 H 0.125 0.875 16 N -0.358 5.358 17 C 0.302 3.698 18 O -0.398 6.398 19 C -0.236 4.236 20 C 0.234 3.766 21 F -0.148 7.148 22 F -0.150 7.150 23 C 0.181 3.819 24 F -0.163 7.163 25 F -0.161 7.161 26 C -0.037 4.037 27 O -0.280 6.280 28 H 0.065 0.935 29 H 0.052 0.948 30 H 0.088 0.912 31 H 0.061 0.939 32 H 0.058 0.942 33 H 0.116 0.884 34 H 0.102 0.898 35 H 0.240 0.760 36 H 0.154 0.846 37 H 0.152 0.848 38 H 0.162 0.838 39 H 0.090 0.910 40 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 2.640 -22.353 -7.081 23.596 hybrid contribution 0.745 1.010 0.051 1.256 sum 3.385 -21.343 -7.030 22.725 Atomic orbital electron populations 1.69841 1.05104 1.25609 1.55662 1.24848 0.95712 0.97646 1.02020 0.86100 0.78716 0.83354 0.77582 1.21496 1.21526 1.20522 1.18869 0.90543 0.81091 1.44188 0.89895 1.45295 1.02554 1.00321 1.84815 1.22467 0.88935 0.87795 0.98367 1.23950 0.96140 0.87510 0.92357 1.22416 0.93153 0.86635 0.97605 1.22680 1.01596 0.95840 0.95118 1.22701 0.91934 0.85477 0.99703 0.87459 1.45849 1.19346 1.18264 1.52358 1.19827 0.87647 0.83328 0.79043 1.90821 1.21493 1.79572 1.47934 1.22834 1.01641 0.95403 1.03684 1.21537 0.83531 0.91376 0.80191 1.93135 1.50243 1.89642 1.81736 1.93143 1.93394 1.86684 1.41762 1.22849 0.80221 0.85525 0.93322 1.93085 1.83281 1.62890 1.77016 1.93075 1.48738 1.89503 1.84803 1.23887 0.93445 1.00184 0.86186 1.88759 1.56389 1.45737 1.37091 0.93474 0.94802 0.91160 0.93928 0.94169 0.88438 0.89836 0.75958 0.84647 0.84824 0.83780 0.91022 0.89415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.56 11.62 55.49 0.64 -25.92 16 2 C 0.00 -0.14 5.50 -17.43 -0.10 -0.23 16 3 Si 0.91 21.51 29.56 -169.99 -5.02 16.48 16 4 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 5 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 6 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 7 C -0.22 -5.95 10.74 -15.06 -0.16 -6.11 16 8 H 0.08 2.14 7.83 -52.49 -0.41 1.73 16 9 N -0.60 -14.87 3.74 -184.63 -0.69 -15.56 16 10 C 0.15 3.47 6.83 -7.90 -0.05 3.42 16 11 C 0.04 0.74 1.66 -90.69 -0.15 0.59 16 12 C 0.13 2.53 8.20 -8.03 -0.07 2.46 16 13 C -0.11 -1.72 6.11 -25.49 -0.16 -1.88 16 14 C 0.11 1.37 3.51 -65.77 -0.23 1.14 16 15 H 0.11 1.43 7.54 -51.93 -0.39 1.04 16 16 N -0.71 -7.26 5.15 -51.71 -0.27 -7.52 16 17 C 0.52 5.57 7.60 -10.99 -0.08 5.49 16 18 O -0.52 -7.88 14.48 5.56 0.08 -7.80 16 19 C -0.20 -1.22 5.17 -27.88 -0.14 -1.36 16 20 C 0.27 2.34 1.40 -26.74 -0.04 2.31 16 21 F -0.17 -1.79 16.13 2.25 0.04 -1.76 16 22 F -0.17 -2.06 16.10 2.25 0.04 -2.03 16 23 C 0.24 1.38 4.83 37.15 0.18 1.56 16 24 F -0.18 -1.57 17.30 2.25 0.04 -1.53 16 25 F -0.18 -1.22 16.80 2.25 0.04 -1.18 16 26 C 0.04 0.57 7.42 38.25 0.28 0.85 16 27 O -0.36 -6.06 11.32 -35.23 -0.40 -6.46 16 28 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 29 H 0.03 0.84 8.14 -51.93 -0.42 0.41 16 30 H 0.07 1.76 7.11 -51.93 -0.37 1.39 16 31 H 0.04 0.75 7.91 -51.93 -0.41 0.34 16 32 H 0.04 0.81 8.14 -51.93 -0.42 0.38 16 33 H 0.10 1.61 7.82 -51.93 -0.41 1.21 16 34 H 0.08 1.18 7.70 -51.93 -0.40 0.78 16 35 H 0.41 3.27 8.63 -40.82 -0.35 2.92 16 36 H 0.14 0.55 7.80 -51.93 -0.41 0.14 16 37 H 0.13 0.34 8.14 -51.93 -0.42 -0.09 16 38 H 0.15 0.17 8.14 -51.93 -0.42 -0.25 16 39 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 40 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 LS Contribution 351.98 15.07 5.30 5.30 Total: -1.00 -34.74 351.98 -5.74 -40.48 By element: Atomic # 1 Polarization: 4.08 SS G_CDS: -4.82 Total: -0.73 kcal Atomic # 6 Polarization: 8.95 SS G_CDS: -0.72 Total: 8.23 kcal Atomic # 7 Polarization: -48.69 SS G_CDS: -0.31 Total: -49.00 kcal Atomic # 8 Polarization: -13.94 SS G_CDS: -0.32 Total: -14.26 kcal Atomic # 9 Polarization: -6.64 SS G_CDS: 0.15 Total: -6.49 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -34.74 -5.74 -40.48 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733800424.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -171.313 kcal (2) G-P(sol) polarization free energy of solvation -34.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -206.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.475 kcal (6) G-S(sol) free energy of system = (1) + (5) -211.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds