Wall clock time and date at job start Sat Apr 11 2020 05:55:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86795 * 119.99992 * 2 1 4 4 H 1.48497 * 109.47462 * 274.98515 * 3 2 1 5 5 H 1.48507 * 109.47207 * 34.98882 * 3 2 1 6 6 H 1.48499 * 109.47100 * 154.98608 * 3 2 1 7 7 C 1.38813 * 120.00068 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00320 * 174.94099 * 7 2 1 9 9 N 1.36942 * 119.99957 * 355.20803 * 7 2 1 10 10 C 1.47222 * 135.96491 * 5.74017 * 9 7 2 11 11 C 1.52912 * 87.68027 * 153.66482 * 10 9 7 12 12 C 1.47218 * 135.96588 * 186.10636 * 9 7 2 13 13 C 1.53316 * 115.72956 * 270.11806 * 11 10 9 14 14 C 1.55031 * 103.78875 * 229.63706 * 13 11 10 15 15 H 1.09004 * 110.86410 * 139.22328 * 14 13 11 16 16 N 1.46500 * 110.87356 * 262.69704 * 14 13 11 17 17 C 1.34771 * 119.99772 * 204.99883 * 16 14 13 18 18 O 1.21282 * 120.00206 * 0.02562 * 17 16 14 19 19 C 1.50706 * 119.99946 * 180.02562 * 17 16 14 20 20 C 1.52997 * 109.47182 * 179.97438 * 19 17 16 21 21 F 1.39896 * 109.47232 * 300.00143 * 20 19 17 22 22 F 1.39899 * 109.46937 * 60.00247 * 20 19 17 23 23 C 1.52993 * 109.46970 * 179.97438 * 20 19 17 24 24 F 1.39899 * 109.47418 * 180.02562 * 23 20 19 25 25 F 1.39905 * 109.47444 * 300.00300 * 23 20 19 26 26 C 1.55062 * 102.12973 * 20.85899 * 14 13 11 27 27 O 1.42844 * 115.81415 * 141.74210 * 11 10 9 28 28 H 0.97002 * 120.00427 * 0.02562 * 1 2 3 29 29 H 1.09001 * 113.49875 * 268.34789 * 10 9 7 30 30 H 1.09000 * 113.49861 * 38.89234 * 10 9 7 31 31 H 1.09005 * 113.50023 * 321.10359 * 12 9 7 32 32 H 1.09000 * 113.50083 * 91.59318 * 12 9 7 33 33 H 1.08995 * 110.56557 * 348.21730 * 13 11 10 34 34 H 1.09007 * 110.56059 * 111.06735 * 13 11 10 35 35 H 0.96995 * 119.99515 * 24.99796 * 16 14 13 36 36 H 1.09000 * 109.46597 * 300.00324 * 19 17 16 37 37 H 1.09002 * 109.46522 * 59.99854 * 19 17 16 38 38 H 1.09000 * 109.47501 * 60.00005 * 23 20 19 39 39 H 1.08998 * 110.58246 * 82.02402 * 26 14 13 40 40 H 1.08990 * 110.58270 * 204.93513 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.3923 2.1073 -1.3947 5 1 1.5042 2.6199 0.8029 6 1 3.5964 1.4120 0.5920 7 6 2.0102 -1.2021 -0.0005 8 1 3.0871 -1.2040 -0.0830 9 7 1.3291 -2.3861 0.0980 10 6 -0.0850 -2.7954 0.1149 11 6 0.3648 -4.1494 -0.4352 12 6 1.6902 -3.8062 0.2399 13 6 0.4109 -4.2648 -1.9633 14 6 -0.3631 -5.5752 -2.2584 15 1 -1.0058 -5.4584 -3.1310 16 7 0.5607 -6.6976 -2.4401 17 6 0.1876 -7.7657 -3.1724 18 8 -0.9127 -7.7975 -3.6814 19 6 1.1378 -8.9206 -3.3588 20 6 0.4729 -9.9935 -4.2235 21 9 -0.6916 -10.4448 -3.5932 22 9 0.1476 -9.4512 -5.4714 23 6 1.4377 -11.1656 -4.4132 24 9 0.8301 -12.1465 -5.2043 25 9 2.6021 -10.7139 -5.0438 26 6 -1.2036 -5.7549 -0.9678 27 8 -0.3231 -5.2900 0.0808 28 1 -0.4851 0.8400 -0.0004 29 1 -0.5089 -2.8526 1.1175 30 1 -0.7095 -2.2295 -0.5763 31 1 2.5635 -4.0933 -0.3459 32 1 1.7499 -4.1380 1.2765 33 1 -0.0871 -3.4133 -2.4268 34 1 1.4413 -4.3425 -2.3104 35 1 1.4409 -6.6719 -2.0333 36 1 2.0453 -8.5687 -3.8495 37 1 1.3909 -9.3433 -2.3865 38 1 1.6917 -11.5882 -3.4411 39 1 -2.1055 -5.1442 -1.0097 40 1 -1.4568 -6.8044 -0.8183 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733800424.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:06 Heat of formation + Delta-G solvation = -237.225404 kcal Electronic energy + Delta-G solvation = -30261.961388 eV Core-core repulsion = 25191.729030 eV Total energy + Delta-G solvation = -5070.232359 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.120 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -50.83924 -49.60838 -48.48618 -48.04212 -41.73855 -40.44043 -37.99545 -35.56652 -34.17564 -33.94818 -31.67113 -29.96973 -28.54934 -27.46394 -26.52805 -24.10013 -23.83382 -22.58579 -21.62524 -20.45389 -19.56690 -19.47218 -18.84422 -18.73199 -17.88048 -17.77594 -17.72177 -17.13839 -17.01425 -16.58244 -16.35183 -15.88674 -15.77180 -15.55064 -15.49466 -15.11477 -14.97983 -14.72791 -14.60962 -14.55839 -14.42028 -14.16000 -13.91713 -13.81152 -13.35536 -13.19895 -13.06734 -12.84908 -12.74528 -12.56219 -12.48067 -12.34770 -12.19293 -11.91348 -11.87809 -11.47617 -11.09723 -10.89254 -10.55336 -10.01808 -8.97584 -7.94411 -5.28296 1.46510 1.46734 1.48525 1.53078 1.57573 2.04361 2.43094 2.53773 2.82798 2.86616 2.94850 3.04043 3.25640 3.38448 3.55841 3.63620 3.69540 3.74415 3.75803 3.81539 3.97995 4.32052 4.35254 4.37679 4.61546 4.69154 4.74719 4.82084 4.87778 4.93694 4.97928 5.15058 5.19898 5.38642 5.46946 5.84834 6.07917 6.41978 6.86263 7.10747 7.56472 8.55464 9.23986 Molecular weight = 340.12amu Principal moments of inertia in cm(-1) A = 0.026390 B = 0.002242 C = 0.002172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1060.762708 B =12488.070611 C =12888.381948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C -0.067 4.067 3 Si 0.980 3.020 4 H -0.285 1.285 5 H -0.298 1.298 6 H -0.265 1.265 7 C -0.226 4.226 8 H 0.094 0.906 9 N -0.629 5.629 10 C 0.142 3.858 11 C 0.071 3.929 12 C 0.131 3.869 13 C -0.106 4.106 14 C 0.121 3.879 15 H 0.103 0.897 16 N -0.697 5.697 17 C 0.513 3.487 18 O -0.572 6.572 19 C -0.185 4.185 20 C 0.253 3.747 21 F -0.184 7.184 22 F -0.199 7.199 23 C 0.241 3.759 24 F -0.201 7.201 25 F -0.185 7.185 26 C 0.038 3.962 27 O -0.367 6.367 28 H 0.249 0.751 29 H 0.008 0.992 30 H 0.040 0.960 31 H 0.075 0.925 32 H 0.041 0.959 33 H 0.078 0.922 34 H 0.101 0.899 35 H 0.420 0.580 36 H 0.164 0.836 37 H 0.182 0.818 38 H 0.203 0.797 39 H 0.068 0.932 40 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.015 -24.524 -6.783 26.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.601 5.601 2 C -0.260 4.260 3 Si 0.808 3.192 4 H -0.211 1.211 5 H -0.225 1.225 6 H -0.189 1.189 7 C -0.353 4.353 8 H 0.112 0.888 9 N -0.357 5.357 10 C 0.016 3.984 11 C 0.030 3.970 12 C 0.005 3.995 13 C -0.145 4.145 14 C 0.016 3.984 15 H 0.121 0.879 16 N -0.349 5.349 17 C 0.300 3.700 18 O -0.451 6.451 19 C -0.224 4.224 20 C 0.215 3.785 21 F -0.165 7.165 22 F -0.180 7.180 23 C 0.186 3.814 24 F -0.183 7.183 25 F -0.166 7.166 26 C -0.039 4.039 27 O -0.285 6.285 28 H 0.058 0.942 29 H 0.025 0.975 30 H 0.058 0.942 31 H 0.093 0.907 32 H 0.059 0.941 33 H 0.096 0.904 34 H 0.120 0.880 35 H 0.258 0.742 36 H 0.181 0.819 37 H 0.199 0.801 38 H 0.219 0.781 39 H 0.086 0.914 40 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 5.301 -24.306 -7.003 25.844 hybrid contribution -0.112 1.543 0.055 1.548 sum 5.189 -22.762 -6.948 24.358 Atomic orbital electron populations 1.70039 1.06693 1.25772 1.57644 1.25710 0.96519 1.01099 1.02714 0.85043 0.77860 0.78925 0.77389 1.21134 1.22476 1.18913 1.19320 0.91275 0.82205 1.42540 0.88831 1.45584 1.03377 1.01826 1.84876 1.22439 0.88305 0.91048 0.96640 1.23436 0.94371 0.85419 0.93756 1.22526 0.95030 0.83642 0.98262 1.22559 1.02815 0.96435 0.92649 1.22353 0.91803 0.85422 0.98869 0.87945 1.45708 1.19479 1.17419 1.52338 1.20591 0.87678 0.84021 0.77703 1.90812 1.23945 1.80569 1.49725 1.22952 1.00622 0.92849 1.05991 1.22244 0.83601 0.93290 0.79390 1.93094 1.51552 1.89937 1.81897 1.93079 1.93738 1.87336 1.43812 1.23296 0.78962 0.84014 0.95080 1.93045 1.83766 1.63540 1.77907 1.93067 1.48724 1.89565 1.85221 1.24042 0.93061 1.00870 0.85959 1.88751 1.56742 1.44666 1.38315 0.94244 0.97456 0.94178 0.90736 0.94104 0.90375 0.88012 0.74202 0.81863 0.80100 0.78077 0.91372 0.87829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.14 11.62 21.65 0.25 -56.89 16 2 C -0.07 -3.75 5.50 84.86 0.47 -3.28 16 3 Si 0.98 44.55 29.56 68.60 2.03 46.57 16 4 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 5 H -0.30 -13.84 7.11 99.48 0.71 -13.13 16 6 H -0.26 -11.23 7.11 99.48 0.71 -10.53 16 7 C -0.23 -12.17 10.74 84.03 0.90 -11.26 16 8 H 0.09 4.71 7.83 -2.91 -0.02 4.69 16 9 N -0.63 -31.11 3.74 -739.17 -2.76 -33.87 16 10 C 0.14 6.77 6.83 83.49 0.57 7.35 16 11 C 0.07 2.49 1.66 -10.83 -0.02 2.48 16 12 C 0.13 4.91 8.20 83.40 0.68 5.59 16 13 C -0.11 -3.07 6.11 31.40 0.19 -2.88 16 14 C 0.12 2.92 3.51 46.39 0.16 3.08 16 15 H 0.10 2.66 7.54 -2.38 -0.02 2.64 16 16 N -0.70 -12.15 5.15 -435.91 -2.24 -14.39 16 17 C 0.51 9.72 7.60 87.66 0.67 10.38 16 18 O -0.57 -16.72 14.48 -3.03 -0.04 -16.76 16 19 C -0.18 -1.56 5.17 29.85 0.15 -1.40 16 20 C 0.25 3.76 1.40 30.59 0.04 3.80 16 21 F -0.18 -3.68 16.13 44.97 0.73 -2.96 16 22 F -0.20 -4.74 16.10 44.97 0.72 -4.01 16 23 C 0.24 2.03 4.83 71.98 0.35 2.38 16 24 F -0.20 -3.13 17.30 44.97 0.78 -2.36 16 25 F -0.18 -1.92 16.80 44.97 0.76 -1.16 16 26 C 0.04 1.01 7.42 72.69 0.54 1.55 16 27 O -0.37 -11.75 11.32 -148.98 -1.69 -13.44 16 28 H 0.25 14.52 8.31 -92.71 -0.77 13.75 16 29 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 30 H 0.04 2.12 7.11 -2.39 -0.02 2.10 16 31 H 0.07 2.35 7.91 -2.38 -0.02 2.33 16 32 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 33 H 0.08 2.61 7.82 -2.39 -0.02 2.59 16 34 H 0.10 2.58 7.70 -2.38 -0.02 2.56 16 35 H 0.42 4.93 8.63 -92.71 -0.80 4.13 16 36 H 0.16 0.52 7.80 -2.39 -0.02 0.50 16 37 H 0.18 -0.20 8.14 -2.39 -0.02 -0.22 16 38 H 0.20 -0.60 8.14 -2.39 -0.02 -0.62 16 39 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 40 H 0.10 2.46 8.14 -2.39 -0.02 2.44 16 Total: -1.00 -79.98 351.98 3.54 -76.44 By element: Atomic # 1 Polarization: 4.73 SS G_CDS: 0.30 Total: 5.04 kcal Atomic # 6 Polarization: 13.08 SS G_CDS: 4.71 Total: 17.79 kcal Atomic # 7 Polarization: -100.40 SS G_CDS: -4.76 Total: -105.16 kcal Atomic # 8 Polarization: -28.47 SS G_CDS: -1.73 Total: -30.20 kcal Atomic # 9 Polarization: -13.47 SS G_CDS: 2.98 Total: -10.48 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 2.03 Total: 46.57 kcal Total: -79.98 3.54 -76.44 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733800424.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -160.783 kcal (2) G-P(sol) polarization free energy of solvation -79.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -240.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.443 kcal (6) G-S(sol) free energy of system = (1) + (5) -237.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds